Wall clock time and date at job start Mon Mar 30 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 C 1.35127 * 125.61307 * 90.02251 * 3 2 1 5 5 C 1.40365 * 107.11335 * 179.77838 * 4 3 2 6 6 C 1.36547 * 106.70592 * 0.35918 * 5 4 3 7 7 C 1.46657 * 125.98713 * 179.90967 * 6 5 4 8 8 O 1.21705 * 119.99894 * 5.93803 * 7 6 5 9 9 N 1.34772 * 119.99995 * 185.94391 * 7 6 5 10 10 C 1.46499 * 120.00044 * 5.99521 * 9 7 6 11 11 C 1.50699 * 109.46967 * 274.35656 * 10 9 7 12 12 H 1.07994 * 120.00622 * 359.97438 * 11 10 9 13 13 C 1.37887 * 119.99853 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99545 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99947 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47074 * 59.99823 * 15 13 11 17 17 H 1.48502 * 109.47114 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47232 * 299.99972 * 15 13 11 19 19 C 1.46502 * 119.99809 * 186.00209 * 9 7 6 20 20 C 1.52998 * 117.50404 * 16.49141 * 19 9 7 21 21 C 1.52997 * 117.49946 * 307.83071 * 19 9 7 22 22 O 1.33927 * 125.61519 * 270.02539 * 3 2 1 23 23 H 1.09004 * 109.47170 * 60.00060 * 1 2 3 24 24 H 1.09006 * 109.47121 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47315 * 299.99702 * 1 2 3 26 26 H 1.08995 * 109.47673 * 239.99988 * 2 1 3 27 27 H 1.09004 * 109.47170 * 119.99940 * 2 1 3 28 28 H 1.08000 * 126.44509 * 0.02562 * 4 3 2 29 29 H 1.08002 * 126.64936 * 180.22198 * 5 4 3 30 30 H 1.08995 * 109.47071 * 154.35598 * 10 9 7 31 31 H 1.08999 * 109.47198 * 34.35601 * 10 9 7 32 32 H 0.97009 * 119.99594 * 180.02562 * 14 13 11 33 33 H 1.09001 * 115.54871 * 162.16690 * 19 9 7 34 34 H 1.09005 * 117.49617 * 0.02562 * 20 19 9 35 35 H 1.08991 * 117.50210 * 145.02169 * 20 19 9 36 36 H 1.08994 * 117.50766 * 214.98677 * 21 19 9 37 37 H 1.09007 * 117.49946 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2950 2.1626 1.0985 5 6 2.7434 3.4159 0.6532 6 6 2.7237 3.3776 -0.7116 7 6 3.1105 4.4703 -1.6101 8 8 3.5931 5.4905 -1.1548 9 7 2.9313 4.3446 -2.9399 10 6 2.2317 3.1751 -3.4776 11 6 3.2112 2.0450 -3.6625 12 1 4.2510 2.1839 -3.4058 13 6 2.7802 0.8336 -4.1606 14 7 1.5143 0.6649 -4.4747 15 14 3.9944 -0.5671 -4.3906 16 1 4.6038 -0.9138 -3.0815 17 1 3.2854 -1.7522 -4.9366 18 1 5.0595 -0.1486 -5.3371 19 6 3.4364 5.3775 -3.8479 20 6 4.4739 6.3574 -3.2961 21 6 3.0409 6.8269 -3.5589 22 8 2.2918 2.1563 -1.0888 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1848 1.8487 2.1260 29 1 3.0435 4.2498 1.2703 30 1 1.7845 3.4293 -4.4385 31 1 1.4499 2.8683 -2.7828 32 1 1.2109 -0.1875 -4.8248 33 1 3.5305 5.0802 -4.8923 34 1 4.7810 6.2333 -2.2576 35 1 5.2502 6.7049 -3.9775 36 1 2.8751 7.4833 -4.4131 37 1 2.4044 7.0120 -2.6935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109193291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:12 Heat of formation + Delta-G solvation = 14.155927 kcal Electronic energy + Delta-G solvation = -20593.734598 eV Core-core repulsion = 17532.267722 eV Total energy + Delta-G solvation = -3061.466876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.01946 -39.40797 -35.85753 -34.32532 -33.61362 -32.18019 -32.12578 -28.35777 -27.04775 -24.30398 -22.89021 -22.49228 -21.86039 -20.88394 -20.28893 -18.92504 -16.77279 -16.42749 -15.75687 -15.58931 -15.10879 -14.50288 -14.44048 -14.08217 -13.81562 -13.15951 -12.73565 -12.65960 -12.43472 -12.40094 -12.21039 -11.95608 -11.34755 -11.22839 -11.21777 -10.94582 -10.72951 -10.67355 -10.57878 -10.23284 -9.77431 -9.59353 -9.37517 -9.09057 -8.50948 -7.96896 -7.53227 -6.13290 -4.17497 1.75475 2.86843 3.24071 3.28674 3.31205 3.35522 3.79512 3.85487 4.35548 4.52211 4.99206 5.19073 5.21556 5.39323 5.44657 5.47746 5.54902 5.59736 5.66461 5.75777 6.01758 6.10626 6.16146 6.18038 6.23419 6.36279 6.43754 6.48928 6.54699 6.71263 6.88299 6.95875 7.24268 7.52475 7.71468 7.79737 8.07953 8.19554 8.76804 8.89273 9.46663 10.94005 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.010027 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.731287 B = 2791.855920 C = 4201.277470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C 0.016 3.984 4 C -0.238 4.238 5 C -0.145 4.145 6 C -0.061 4.061 7 C 0.597 3.403 8 O -0.551 6.551 9 N -0.558 5.558 10 C 0.238 3.762 11 C -0.521 4.521 12 H 0.057 0.943 13 C 0.070 3.930 14 N -0.890 5.890 15 Si 0.889 3.111 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.086 3.914 20 C -0.198 4.198 21 C -0.193 4.193 22 O -0.095 6.095 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.786 1.576 6.327 6.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.038 4.038 4 C -0.258 4.258 5 C -0.166 4.166 6 C -0.114 4.114 7 C 0.386 3.614 8 O -0.434 6.434 9 N -0.284 5.284 10 C 0.119 3.881 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.132 4.132 14 N -0.529 5.529 15 Si 0.716 3.284 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.019 4.019 20 C -0.235 4.235 21 C -0.232 4.232 22 O 0.013 5.987 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.162 0.838 29 H 0.167 0.833 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.737 1.831 6.094 6.406 hybrid contribution 0.661 -0.915 -0.073 1.132 sum -0.075 0.916 6.022 6.091 Atomic orbital electron populations 1.21735 0.93973 1.01961 1.02669 1.20090 0.96428 0.87958 1.03925 1.22867 1.00659 0.95232 0.85088 1.21372 1.10539 0.94775 0.99080 1.21715 1.03136 0.98733 0.92987 1.22012 1.09137 0.86445 0.93809 1.16760 0.78630 0.84298 0.81674 1.90614 1.47524 1.28535 1.76727 1.47651 1.53845 1.22778 1.04141 1.19626 0.92468 0.80651 0.95348 1.21301 0.95050 0.96494 1.43167 0.92452 1.24810 0.95104 0.98152 0.95179 1.69916 1.14174 1.25150 1.43642 0.86701 0.81346 0.81624 0.78693 1.20142 1.21116 1.20178 1.21600 1.02069 0.83848 0.94389 1.23746 0.92062 1.02474 1.05219 1.23218 0.99226 0.97666 1.03051 1.84767 1.61362 1.20648 1.31936 0.91524 0.92048 0.92718 0.89430 0.89554 0.83810 0.83298 0.94228 0.93409 0.92662 0.85293 0.84878 0.89816 0.89192 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.89 37.15 0.37 -1.64 16 2 C -0.05 -0.72 6.47 -27.88 -0.18 -0.90 16 3 C 0.02 0.30 6.57 -35.41 -0.23 0.07 16 4 C -0.24 -4.01 10.77 -39.89 -0.43 -4.44 16 5 C -0.14 -2.70 10.63 -39.39 -0.42 -3.12 16 6 C -0.06 -1.31 6.64 -36.80 -0.24 -1.56 16 7 C 0.60 13.39 7.40 -12.86 -0.10 13.29 16 8 O -0.55 -12.34 12.61 5.18 0.07 -12.28 16 9 N -0.56 -12.44 2.83 -169.01 -0.48 -12.92 16 10 C 0.24 5.86 4.79 -5.19 -0.02 5.83 16 11 C -0.52 -13.73 7.79 -34.44 -0.27 -14.00 16 12 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 14 N -0.89 -24.13 13.29 55.43 0.74 -23.39 16 15 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.09 1.66 6.58 -67.93 -0.45 1.21 16 20 C -0.20 -3.49 9.63 -26.70 -0.26 -3.75 16 21 C -0.19 -3.27 9.87 -26.70 -0.26 -3.53 16 22 O -0.10 -2.13 6.39 5.01 0.03 -2.10 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.15 2.50 8.06 -52.49 -0.42 2.08 16 30 H 0.04 1.01 8.04 -51.93 -0.42 0.59 16 31 H 0.05 1.25 5.95 -51.93 -0.31 0.94 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.13 2.36 8.14 -51.93 -0.42 1.93 16 34 H 0.13 2.66 5.22 -52.10 -0.27 2.39 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.71 7.59 -51.93 -0.39 1.32 16 LS Contribution 312.64 15.07 4.71 4.71 Total: -1.00 -28.57 312.64 -7.71 -36.29 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.17 Total: 4.89 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -2.59 Total: -10.78 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.26 Total: -36.31 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.10 Total: -14.37 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.57 -7.71 -36.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109193291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.442 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds