Wall clock time and date at job start Mon Mar 30 2020 07:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46811 * 2 1 4 4 C 1.46500 * 120.00243 * 264.87645 * 3 2 1 5 5 C 1.50693 * 109.47189 * 270.00587 * 4 3 2 6 6 H 1.08005 * 120.00104 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00232 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00384 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99486 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46836 * 90.00625 * 9 7 5 11 11 H 1.48499 * 109.46973 * 210.00223 * 9 7 5 12 12 H 1.48497 * 109.47388 * 330.00447 * 9 7 5 13 13 C 1.34783 * 119.99772 * 84.88065 * 3 2 1 14 14 O 1.21549 * 119.99924 * 185.39075 * 13 3 2 15 15 C 1.47863 * 119.99924 * 5.66765 * 13 3 2 16 16 C 1.39599 * 120.11645 * 55.01128 * 15 13 3 17 17 C 1.37965 * 119.96382 * 179.78593 * 16 15 13 18 18 C 1.38291 * 120.20415 * 0.47403 * 17 16 15 19 19 C 1.38799 * 120.24105 * 359.78340 * 18 17 16 20 20 O 1.35911 * 119.99044 * 180.02562 * 19 18 17 21 21 C 1.38499 * 120.03160 * 359.97438 * 19 18 17 22 22 C 1.50700 * 120.10671 * 180.02562 * 21 19 18 23 23 H 1.08998 * 109.46968 * 299.99671 * 1 2 3 24 24 H 1.09003 * 109.47117 * 59.99856 * 1 2 3 25 25 H 1.09001 * 109.46801 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46968 * 240.00329 * 2 1 3 27 27 H 1.08995 * 109.47370 * 120.00173 * 2 1 3 28 28 H 1.09001 * 109.46898 * 30.00599 * 4 3 2 29 29 H 1.08999 * 109.46768 * 150.00071 * 4 3 2 30 30 H 0.96995 * 120.00101 * 179.97438 * 8 7 5 31 31 H 1.07995 * 120.02209 * 0.02750 * 16 15 13 32 32 H 1.08003 * 119.90141 * 180.23842 * 17 16 15 33 33 H 1.08007 * 119.87970 * 179.76163 * 18 17 16 34 34 H 0.96709 * 113.99739 * 269.98285 * 20 19 18 35 35 H 1.09000 * 109.47069 * 274.90192 * 22 21 19 36 36 H 1.09007 * 109.46951 * 34.89848 * 22 21 19 37 37 H 1.08995 * 109.47205 * 154.89821 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3693 2.0342 -1.2636 5 6 3.8238 1.7863 -1.5701 6 1 4.4266 1.2013 -0.8913 7 6 4.3853 2.3072 -2.7166 8 7 5.6548 2.0914 -2.9838 9 14 3.3427 3.3197 -3.8903 10 1 3.4114 4.7518 -3.5037 11 1 3.8548 3.1556 -5.2745 12 1 1.9333 2.8565 -3.8257 13 6 2.1447 2.0513 1.1626 14 8 2.4554 3.2264 1.1561 15 6 1.9114 1.3553 2.4462 16 6 2.6196 0.1915 2.7507 17 6 2.4026 -0.4529 3.9512 18 6 1.4779 0.0450 4.8509 19 6 0.7651 1.1985 4.5545 20 8 -0.1421 1.6836 5.4426 21 6 0.9787 1.8562 3.3544 22 6 0.2062 3.1091 3.0311 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.7543 1.6268 -2.0661 29 1 2.1932 3.1066 -1.1796 30 1 6.0496 2.4575 -3.7905 31 1 3.3398 -0.2021 2.0488 32 1 2.9539 -1.3511 4.1875 33 1 1.3094 -0.4658 5.7875 34 1 -1.0364 1.3365 5.3205 35 1 -0.7538 2.8404 2.5903 36 1 0.0396 3.6792 3.9451 37 1 0.7741 3.7138 2.3241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125603760.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:09 Heat of formation + Delta-G solvation = -50.687570 kcal Electronic energy + Delta-G solvation = -20167.513937 eV Core-core repulsion = 17103.235236 eV Total energy + Delta-G solvation = -3064.278701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36677 -38.71241 -36.45170 -35.49572 -32.80093 -32.50899 -30.49176 -30.16235 -27.75593 -26.73094 -23.96629 -22.98254 -22.08771 -21.33501 -19.17626 -17.88807 -16.93495 -16.26965 -16.16322 -15.85391 -15.60688 -14.87311 -14.35275 -13.97507 -13.57547 -13.32795 -13.19440 -13.15866 -12.60752 -12.32584 -12.29585 -12.01342 -11.95119 -11.58709 -11.47922 -11.39250 -11.00632 -10.72616 -10.67538 -10.49710 -10.17339 -9.56597 -9.13853 -8.72902 -8.60652 -8.54334 -7.75360 -6.11043 -4.10345 1.06453 1.24468 3.18205 3.27836 3.33805 3.35878 3.56008 3.81911 4.18539 4.37760 4.79434 4.84353 5.01664 5.11092 5.22905 5.31325 5.40067 5.55251 5.64067 5.69894 5.74946 5.79234 5.85917 6.00633 6.12275 6.29700 6.30135 6.37611 6.40134 6.54317 6.66128 6.74210 6.93495 7.30275 7.55559 7.57788 8.17617 8.43411 8.84909 8.92854 9.48946 11.02196 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.005552 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.717335 B = 5042.207169 C = 5189.077117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.584 5.584 4 C 0.215 3.785 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.555 3.445 14 O -0.531 6.531 15 C -0.096 4.096 16 C -0.093 4.093 17 C -0.115 4.115 18 C -0.132 4.132 19 C 0.093 3.907 20 O -0.494 6.494 21 C -0.067 4.067 22 C -0.129 4.129 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.386 0.614 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.326 -7.099 12.226 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.026 4.026 3 N -0.314 5.314 4 C 0.095 3.905 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.342 3.658 14 O -0.409 6.409 15 C -0.100 4.100 16 C -0.112 4.112 17 C -0.133 4.133 18 C -0.150 4.150 19 C 0.049 3.951 20 O -0.304 6.304 21 C -0.068 4.068 22 C -0.186 4.186 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.241 0.759 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.530 -6.115 12.254 18.562 hybrid contribution -0.697 0.114 -0.823 1.085 sum -13.227 -6.001 11.430 18.483 Atomic orbital electron populations 1.22201 0.96747 1.01548 1.02052 1.21660 0.93535 0.83835 1.03580 1.47893 1.62853 1.13383 1.07282 1.19708 0.96762 0.94090 0.79980 1.21320 0.93435 1.34484 1.07725 0.90713 1.24844 0.94850 0.95626 0.97574 1.69891 1.11689 1.45421 1.26459 0.86856 0.80949 0.81496 0.80438 1.19852 1.21035 1.19048 1.18100 0.77885 0.86452 0.83373 1.90733 1.47683 1.15623 1.86867 1.19949 0.98124 0.96091 0.95797 1.21345 0.98882 0.93650 0.97290 1.20930 0.98380 1.00442 0.93535 1.21453 0.98034 0.95463 1.00072 1.18120 0.94646 0.93539 0.88799 1.84828 1.21337 1.70028 1.54160 1.20190 0.97045 0.97384 0.92218 1.20931 0.99420 0.94812 1.03404 0.93068 0.92343 0.91991 0.89562 0.90664 0.95058 0.94373 0.92512 0.84704 0.85168 0.85416 0.75917 0.91555 0.90855 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.20 37.16 0.38 -1.81 16 2 C 0.10 1.55 5.90 -4.04 -0.02 1.53 16 3 N -0.58 -12.06 2.47 -176.17 -0.43 -12.49 16 4 C 0.21 5.23 4.25 -5.20 -0.02 5.21 16 5 C -0.53 -15.13 9.94 -34.44 -0.34 -15.47 16 6 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 13 C 0.56 11.71 6.43 -12.32 -0.08 11.63 16 14 O -0.53 -13.29 14.72 5.32 0.08 -13.21 16 15 C -0.10 -1.63 4.88 -104.99 -0.51 -2.14 16 16 C -0.09 -1.35 7.60 -39.17 -0.30 -1.65 16 17 C -0.11 -1.33 10.03 -39.66 -0.40 -1.73 16 18 C -0.13 -1.49 9.98 -39.35 -0.39 -1.88 16 19 C 0.09 1.19 6.67 -39.28 -0.26 0.93 16 20 O -0.49 -5.35 12.63 -19.46 -0.25 -5.59 16 21 C -0.07 -1.01 5.93 -104.06 -0.62 -1.63 16 22 C -0.13 -1.88 9.41 36.01 0.34 -1.54 16 23 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 1.39 8.03 -51.93 -0.42 0.98 16 27 H 0.08 1.06 4.53 -51.93 -0.24 0.83 16 28 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 29 H 0.04 0.99 6.78 -51.93 -0.35 0.64 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.14 1.96 7.37 -52.49 -0.39 1.57 16 32 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.39 2.26 9.06 45.56 0.41 2.67 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.98 7.69 -51.92 -0.40 0.58 16 37 H 0.09 1.63 5.59 -51.93 -0.29 1.34 16 LS Contribution 309.82 15.07 4.67 4.67 Total: -1.00 -34.49 309.82 -6.31 -40.80 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.16 Total: 2.27 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.33 Total: -6.53 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.34 Total: -39.20 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.17 Total: -18.80 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.49 -6.31 -40.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125603760.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.887 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds