Wall clock time and date at job start Mon Mar 30 2020 07:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46811 * 2 1 4 4 C 1.46500 * 120.00243 * 264.87645 * 3 2 1 5 5 C 1.50693 * 109.47189 * 270.00587 * 4 3 2 6 6 H 1.08005 * 120.00104 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00232 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00384 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99486 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46836 * 90.00625 * 9 7 5 11 11 H 1.48499 * 109.46973 * 210.00223 * 9 7 5 12 12 H 1.48497 * 109.47388 * 330.00447 * 9 7 5 13 13 C 1.34783 * 119.99772 * 84.88065 * 3 2 1 14 14 O 1.21549 * 119.99924 * 185.39075 * 13 3 2 15 15 C 1.47863 * 119.99924 * 5.66765 * 13 3 2 16 16 C 1.39599 * 120.11645 * 55.01128 * 15 13 3 17 17 C 1.37965 * 119.96382 * 179.78593 * 16 15 13 18 18 C 1.38291 * 120.20415 * 0.47403 * 17 16 15 19 19 C 1.38799 * 120.24105 * 359.78340 * 18 17 16 20 20 O 1.35911 * 119.99044 * 180.02562 * 19 18 17 21 21 C 1.38499 * 120.03160 * 359.97438 * 19 18 17 22 22 C 1.50700 * 120.10671 * 180.02562 * 21 19 18 23 23 H 1.08998 * 109.46968 * 299.99671 * 1 2 3 24 24 H 1.09003 * 109.47117 * 59.99856 * 1 2 3 25 25 H 1.09001 * 109.46801 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46968 * 240.00329 * 2 1 3 27 27 H 1.08995 * 109.47370 * 120.00173 * 2 1 3 28 28 H 1.09001 * 109.46898 * 30.00599 * 4 3 2 29 29 H 1.08999 * 109.46768 * 150.00071 * 4 3 2 30 30 H 0.96995 * 120.00101 * 179.97438 * 8 7 5 31 31 H 1.07995 * 120.02209 * 0.02750 * 16 15 13 32 32 H 1.08003 * 119.90141 * 180.23842 * 17 16 15 33 33 H 1.08007 * 119.87970 * 179.76163 * 18 17 16 34 34 H 0.96709 * 113.99739 * 269.98285 * 20 19 18 35 35 H 1.09000 * 109.47069 * 274.90192 * 22 21 19 36 36 H 1.09007 * 109.46951 * 34.89848 * 22 21 19 37 37 H 1.08995 * 109.47205 * 154.89821 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3693 2.0342 -1.2636 5 6 3.8238 1.7863 -1.5701 6 1 4.4266 1.2013 -0.8913 7 6 4.3853 2.3072 -2.7166 8 7 5.6548 2.0914 -2.9838 9 14 3.3427 3.3197 -3.8903 10 1 3.4114 4.7518 -3.5037 11 1 3.8548 3.1556 -5.2745 12 1 1.9333 2.8565 -3.8257 13 6 2.1447 2.0513 1.1626 14 8 2.4554 3.2264 1.1561 15 6 1.9114 1.3553 2.4462 16 6 2.6196 0.1915 2.7507 17 6 2.4026 -0.4529 3.9512 18 6 1.4779 0.0450 4.8509 19 6 0.7651 1.1985 4.5545 20 8 -0.1421 1.6836 5.4426 21 6 0.9787 1.8562 3.3544 22 6 0.2062 3.1091 3.0311 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.7543 1.6268 -2.0661 29 1 2.1932 3.1066 -1.1796 30 1 6.0496 2.4575 -3.7905 31 1 3.3398 -0.2021 2.0488 32 1 2.9539 -1.3511 4.1875 33 1 1.3094 -0.4658 5.7875 34 1 -1.0364 1.3365 5.3205 35 1 -0.7538 2.8404 2.5903 36 1 0.0396 3.6792 3.9451 37 1 0.7741 3.7138 2.3241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125603760.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:08 Heat of formation + Delta-G solvation = -75.552055 kcal Electronic energy + Delta-G solvation = -20168.592142 eV Core-core repulsion = 17103.235236 eV Total energy + Delta-G solvation = -3065.356906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62680 -40.00539 -37.46082 -37.11878 -34.87015 -33.65408 -32.05033 -31.30125 -29.46797 -27.89623 -25.41371 -24.50732 -23.40500 -22.53879 -20.45034 -19.21505 -19.02218 -17.61719 -17.44854 -17.10210 -16.86177 -16.30664 -15.88747 -15.41742 -14.87960 -14.81565 -14.48200 -14.33774 -14.21229 -13.89414 -13.54767 -13.28431 -13.25189 -13.04518 -12.83672 -12.61317 -12.46314 -12.44265 -12.05507 -11.91155 -11.76647 -11.66200 -10.85376 -10.70935 -9.85230 -9.59364 -9.40564 -8.36259 -6.41835 -0.02470 0.23873 1.31011 1.35324 1.43559 1.71915 2.18254 2.29144 2.60250 2.97869 3.25100 3.57005 3.82708 3.99193 4.06915 4.13675 4.34852 4.44068 4.55257 4.64103 4.68366 4.71525 4.76561 4.79693 4.89675 4.92588 4.96979 5.20372 5.30529 5.32003 5.37733 5.42884 5.45031 5.59984 5.79502 6.20659 6.58398 6.59895 6.86819 7.15803 7.30103 8.80510 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.005552 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.717335 B = 5042.207169 C = 5189.077117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.090 3.910 3 N -0.590 5.590 4 C 0.224 3.776 5 C -0.539 4.539 6 H 0.031 0.969 7 C 0.014 3.986 8 N -0.943 5.943 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.273 1.273 12 H -0.238 1.238 13 C 0.549 3.451 14 O -0.586 6.586 15 C -0.119 4.119 16 C -0.106 4.106 17 C -0.100 4.100 18 C -0.118 4.118 19 C 0.103 3.897 20 O -0.498 6.498 21 C -0.084 4.084 22 C -0.124 4.124 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.019 0.981 30 H 0.269 0.731 31 H 0.124 0.876 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.410 0.590 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.875 -8.749 13.758 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.031 4.031 3 N -0.319 5.319 4 C 0.102 3.898 5 C -0.577 4.577 6 H 0.049 0.951 7 C -0.184 4.184 8 N -0.583 5.583 9 Si 0.768 3.232 10 H -0.203 1.203 11 H -0.198 1.198 12 H -0.162 1.162 13 C 0.338 3.662 14 O -0.468 6.468 15 C -0.123 4.123 16 C -0.125 4.125 17 C -0.118 4.118 18 C -0.136 4.136 19 C 0.058 3.942 20 O -0.311 6.311 21 C -0.085 4.085 22 C -0.180 4.180 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.183 0.817 33 H 0.182 0.818 34 H 0.269 0.731 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.130 -7.826 13.800 21.923 hybrid contribution 0.128 0.556 -1.138 1.273 sum -15.002 -7.270 12.662 20.935 Atomic orbital electron populations 1.22113 0.93989 1.03623 1.01718 1.21964 0.95743 0.81253 1.04188 1.47984 1.62691 1.15107 1.06119 1.19371 0.94381 0.93565 0.82494 1.21533 0.95342 1.33803 1.07047 0.95108 1.25813 0.96168 0.96809 0.99617 1.70037 1.13792 1.46948 1.27498 0.85745 0.80451 0.78997 0.77972 1.20253 1.19752 1.16153 1.18852 0.76473 0.86002 0.84860 1.90683 1.50112 1.18156 1.87866 1.19639 1.00812 0.97537 0.94280 1.21347 0.98896 0.93417 0.98810 1.21267 0.97847 1.00817 0.91831 1.21844 0.96372 0.94465 1.00929 1.18136 0.94957 0.93373 0.87698 1.84775 1.22719 1.70427 1.53174 1.20295 0.97228 0.97822 0.93179 1.20836 0.99673 0.94571 1.02926 0.92955 0.93102 0.88604 0.90215 0.88844 0.93048 0.96288 0.92174 0.85764 0.81692 0.81836 0.73055 0.89705 0.89828 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.20 71.98 0.73 -3.05 16 2 C 0.09 2.84 5.90 86.38 0.51 3.35 16 3 N -0.59 -25.11 2.47 -829.54 -2.05 -27.16 16 4 C 0.22 11.19 4.25 85.63 0.36 11.56 16 5 C -0.54 -32.10 9.94 25.60 0.25 -31.85 16 6 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 7 C 0.01 0.85 5.47 84.65 0.46 1.31 16 8 N -0.94 -59.87 13.96 21.45 0.30 -59.57 16 9 Si 0.95 44.82 27.47 68.60 1.88 46.71 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 13 C 0.55 24.21 6.43 86.79 0.56 24.77 16 14 O -0.59 -31.30 14.72 -3.87 -0.06 -31.36 16 15 C -0.12 -4.06 4.88 -20.10 -0.10 -4.16 16 16 C -0.11 -2.98 7.60 22.53 0.17 -2.81 16 17 C -0.10 -1.96 10.03 22.22 0.22 -1.74 16 18 C -0.12 -2.13 9.98 22.42 0.22 -1.91 16 19 C 0.10 2.30 6.67 22.47 0.15 2.45 16 20 O -0.50 -8.85 12.63 -92.55 -1.17 -10.02 16 21 C -0.08 -2.45 5.93 -19.50 -0.12 -2.57 16 22 C -0.12 -3.58 9.41 71.24 0.67 -2.91 16 23 H 0.05 1.26 8.06 -2.39 -0.02 1.24 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 2.58 8.03 -2.39 -0.02 2.56 16 27 H 0.09 2.59 4.53 -2.39 -0.01 2.57 16 28 H 0.05 2.35 7.13 -2.39 -0.02 2.33 16 29 H 0.02 1.02 6.78 -2.39 -0.02 1.01 16 30 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.12 3.66 7.37 -2.91 -0.02 3.64 16 32 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.41 3.02 9.06 -74.05 -0.67 2.35 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.08 2.16 7.69 -2.38 -0.02 2.15 16 37 H 0.05 1.98 5.59 -2.39 -0.01 1.97 16 Total: -1.00 -80.15 309.82 3.38 -76.78 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.36 Total: 12.18 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 4.11 Total: -7.55 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -1.75 Total: -86.73 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -1.23 Total: -41.37 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Total: -80.15 3.38 -76.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125603760.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.224 kcal (2) G-P(sol) polarization free energy of solvation -80.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds