Wall clock time and date at job start Mon Mar 30 2020 06:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46555 * 2 1 4 4 C 1.52995 * 109.46805 * 240.00436 * 2 1 3 5 5 C 1.50696 * 109.47630 * 64.99797 * 4 2 1 6 6 O 1.20830 * 119.99784 * 359.97438 * 5 4 2 7 7 O 1.34231 * 120.00448 * 179.97438 * 5 4 2 8 8 C 1.45198 * 117.00230 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46912 * 330.00625 * 8 7 5 10 10 C 1.53000 * 109.46967 * 90.00189 * 8 7 5 11 11 C 1.50694 * 109.47115 * 210.00154 * 8 7 5 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 8 7 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.50699 * 109.47069 * 120.00011 * 2 1 3 20 20 C 1.38648 * 120.78627 * 59.72172 * 19 2 1 21 21 C 1.38210 * 119.15570 * 179.75099 * 20 19 2 22 22 N 1.31867 * 120.76760 * 0.53350 * 21 20 19 23 23 C 1.31874 * 121.72547 * 359.73925 * 22 21 20 24 24 C 1.38211 * 120.75935 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.46555 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46561 * 299.99766 * 1 2 3 27 27 H 1.08995 * 109.47230 * 59.99802 * 1 2 3 28 28 H 1.09000 * 109.47456 * 304.99235 * 4 2 1 29 29 H 1.09008 * 109.46940 * 185.00011 * 4 2 1 30 30 H 1.09000 * 109.47156 * 59.99715 * 10 8 7 31 31 H 1.08997 * 109.47359 * 180.02562 * 10 8 7 32 32 H 1.09007 * 109.47356 * 299.99990 * 10 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.07997 * 120.42184 * 359.97438 * 20 19 2 35 35 H 1.08006 * 119.61563 * 180.25117 * 21 20 19 36 36 H 1.07994 * 119.62130 * 180.02562 * 23 22 21 37 37 H 1.08005 * 120.41266 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0133 1.0832 -2.3637 7 8 1.9839 -0.3894 -3.6952 8 6 1.5657 0.4110 -4.8322 9 1 0.6368 0.9277 -4.5908 10 6 2.6509 1.4389 -5.1589 11 6 1.3473 -0.4849 -6.0241 12 1 1.5063 -1.5495 -5.9359 13 6 0.9443 0.0545 -7.2273 14 7 0.7501 1.3508 -7.3347 15 14 0.6742 -1.0560 -8.7049 16 1 1.9416 -1.1804 -9.4688 17 1 0.2411 -2.3989 -8.2422 18 1 -0.3748 -0.4712 -9.5783 19 6 2.0324 -0.7104 1.2305 20 6 1.7028 -2.0358 1.4689 21 6 2.1862 -2.6559 2.6056 22 7 2.9432 -1.9988 3.4623 23 6 3.2722 -0.7362 3.2706 24 6 2.8305 -0.0525 2.1536 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6055 -1.7197 -1.2952 29 1 3.1264 -0.7994 -1.2056 30 1 3.5799 0.9223 -5.4002 31 1 2.3369 2.0401 -6.0121 32 1 2.8090 2.0870 -4.2968 33 1 0.4670 1.7303 -8.1813 34 1 1.0791 -2.5779 0.7735 35 1 1.9374 -3.6894 2.7966 36 1 3.8945 -0.2310 3.9943 37 1 3.1037 0.9814 2.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126012002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:10 Heat of formation + Delta-G solvation = -70.954579 kcal Electronic energy + Delta-G solvation = -19254.055110 eV Core-core repulsion = 16188.897566 eV Total energy + Delta-G solvation = -3065.157544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52155 -39.56439 -36.50988 -35.16984 -33.28791 -31.44256 -31.07488 -29.70461 -27.87948 -25.34455 -24.50181 -23.57497 -22.07611 -20.54863 -19.40098 -17.43764 -16.71558 -16.43610 -16.26397 -15.69220 -15.43975 -15.26542 -14.49681 -14.20502 -13.91289 -13.53237 -13.43246 -13.07651 -12.60611 -12.23425 -11.95812 -11.94917 -11.48435 -11.30212 -11.15674 -11.05193 -10.86836 -10.83753 -10.40207 -10.30235 -9.75866 -9.61551 -9.58690 -9.48031 -9.30749 -8.93321 -8.51866 -6.21232 -4.28272 0.98031 1.09233 2.95448 3.22719 3.28074 3.31590 3.55628 3.71092 4.29076 4.30681 4.53155 4.57045 4.87049 4.97913 5.00200 5.04673 5.11874 5.28611 5.51135 5.60489 5.64227 5.69050 5.76177 5.82500 5.94941 6.06038 6.31048 6.40833 6.54873 6.62027 6.85398 6.88516 7.15417 7.57471 7.69929 7.80948 7.91429 8.11561 8.60611 8.85703 9.37418 10.86172 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040828 B = 0.003669 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.644130 B = 7630.167640 C = 7863.417182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.042 4.042 3 H 0.092 0.908 4 C -0.109 4.109 5 C 0.453 3.547 6 O -0.519 6.519 7 O -0.357 6.357 8 C 0.215 3.785 9 H 0.047 0.953 10 C -0.155 4.155 11 C -0.522 4.522 12 H 0.069 0.931 13 C 0.062 3.938 14 N -0.889 5.889 15 Si 0.912 3.088 16 H -0.277 1.277 17 H -0.271 1.271 18 H -0.284 1.284 19 C -0.027 4.027 20 C -0.167 4.167 21 C 0.097 3.903 22 N -0.493 5.493 23 C 0.097 3.903 24 C -0.169 4.169 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.015 0.985 33 H 0.266 0.734 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 -4.304 16.534 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.061 4.061 3 H 0.110 0.890 4 C -0.147 4.147 5 C 0.296 3.704 6 O -0.410 6.410 7 O -0.273 6.273 8 C 0.163 3.837 9 H 0.065 0.935 10 C -0.213 4.213 11 C -0.560 4.560 12 H 0.087 0.913 13 C -0.140 4.140 14 N -0.527 5.527 15 Si 0.739 3.261 16 H -0.203 1.203 17 H -0.196 1.196 18 H -0.210 1.210 19 C -0.035 4.035 20 C -0.187 4.187 21 C -0.059 4.059 22 N -0.202 5.202 23 C -0.059 4.059 24 C -0.189 4.189 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.763 -4.287 17.111 17.855 hybrid contribution -0.434 0.087 -1.625 1.684 sum 2.329 -4.201 15.487 16.214 Atomic orbital electron populations 1.21990 0.93016 1.02119 1.03685 1.20004 0.97335 0.99445 0.89273 0.88953 1.21388 1.03492 1.00099 0.89765 1.23223 0.76784 0.84169 0.86226 1.90568 1.38011 1.24912 1.87514 1.86486 1.71263 1.54331 1.15264 1.20630 0.94482 0.89333 0.79268 0.93527 1.22163 0.98699 0.99043 1.01352 1.21036 1.46863 0.94484 0.93617 0.91328 1.24895 0.94837 0.95459 0.98803 1.69900 1.45948 1.10620 1.26237 0.86270 0.78049 0.80354 0.81450 1.20337 1.19609 1.20954 1.20349 0.93870 0.93914 0.95345 1.22079 1.01865 0.95327 0.99413 1.22751 0.93111 0.99900 0.90138 1.67665 1.12657 1.09269 1.30623 1.22740 0.96948 0.90423 0.95837 1.22126 0.99418 1.01686 0.95687 0.92786 0.92692 0.89595 0.88048 0.88234 0.94463 0.88243 0.96546 0.92383 0.84610 0.82825 0.82872 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.75 37.16 0.33 -1.58 16 2 C -0.04 -0.52 2.24 -91.77 -0.21 -0.72 16 3 H 0.09 1.19 7.76 -51.93 -0.40 0.79 16 4 C -0.11 -1.50 5.04 -27.89 -0.14 -1.64 16 5 C 0.45 8.90 7.65 36.00 0.28 9.18 16 6 O -0.52 -11.38 13.19 -18.75 -0.25 -11.63 16 7 O -0.36 -8.32 9.86 -39.26 -0.39 -8.71 16 8 C 0.22 5.72 2.56 -27.89 -0.07 5.64 16 9 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 10 C -0.15 -3.90 9.32 37.16 0.35 -3.56 16 11 C -0.52 -14.56 8.90 -34.44 -0.31 -14.87 16 12 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -25.11 11.32 55.43 0.63 -24.49 16 15 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 C -0.03 -0.29 4.79 -104.32 -0.50 -0.79 16 20 C -0.17 -1.66 8.89 -39.44 -0.35 -2.01 16 21 C 0.10 0.97 11.18 -17.55 -0.20 0.77 16 22 N -0.49 -5.60 10.36 -13.25 -0.14 -5.74 16 23 C 0.10 0.96 11.18 -17.54 -0.20 0.77 16 24 C -0.17 -1.68 9.76 -39.44 -0.39 -2.06 16 25 H 0.05 0.60 7.46 -51.93 -0.39 0.22 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.34 5.96 -51.93 -0.31 1.03 16 28 H 0.10 1.22 7.68 -51.93 -0.40 0.83 16 29 H 0.10 1.23 8.14 -51.92 -0.42 0.81 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 2.68 6.07 -51.93 -0.32 2.36 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.14 1.14 7.35 -52.49 -0.39 0.76 16 35 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.14 1.11 8.01 -52.48 -0.42 0.69 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -31.11 313.42 -7.01 -38.12 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.07 Total: 1.07 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.50 Total: -9.25 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: 0.49 Total: -30.22 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.63 Total: -20.34 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.11 -7.01 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126012002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.831 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds