Wall clock time and date at job start Mon Mar 30 2020 06:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46555 * 2 1 4 4 C 1.52995 * 109.46805 * 240.00436 * 2 1 3 5 5 C 1.50696 * 109.47630 * 64.99797 * 4 2 1 6 6 O 1.20830 * 119.99784 * 359.97438 * 5 4 2 7 7 O 1.34231 * 120.00448 * 179.97438 * 5 4 2 8 8 C 1.45198 * 117.00230 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46912 * 330.00625 * 8 7 5 10 10 C 1.53000 * 109.46967 * 90.00189 * 8 7 5 11 11 C 1.50694 * 109.47115 * 210.00154 * 8 7 5 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 8 7 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.50699 * 109.47069 * 120.00011 * 2 1 3 20 20 C 1.38648 * 120.78627 * 59.72172 * 19 2 1 21 21 C 1.38210 * 119.15570 * 179.75099 * 20 19 2 22 22 N 1.31867 * 120.76760 * 0.53350 * 21 20 19 23 23 C 1.31874 * 121.72547 * 359.73925 * 22 21 20 24 24 C 1.38211 * 120.75935 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.46555 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46561 * 299.99766 * 1 2 3 27 27 H 1.08995 * 109.47230 * 59.99802 * 1 2 3 28 28 H 1.09000 * 109.47456 * 304.99235 * 4 2 1 29 29 H 1.09008 * 109.46940 * 185.00011 * 4 2 1 30 30 H 1.09000 * 109.47156 * 59.99715 * 10 8 7 31 31 H 1.08997 * 109.47359 * 180.02562 * 10 8 7 32 32 H 1.09007 * 109.47356 * 299.99990 * 10 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.07997 * 120.42184 * 359.97438 * 20 19 2 35 35 H 1.08006 * 119.61563 * 180.25117 * 21 20 19 36 36 H 1.07994 * 119.62130 * 180.02562 * 23 22 21 37 37 H 1.08005 * 120.41266 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0133 1.0832 -2.3637 7 8 1.9839 -0.3894 -3.6952 8 6 1.5657 0.4110 -4.8322 9 1 0.6368 0.9277 -4.5908 10 6 2.6509 1.4389 -5.1589 11 6 1.3473 -0.4849 -6.0241 12 1 1.5063 -1.5495 -5.9359 13 6 0.9443 0.0545 -7.2273 14 7 0.7501 1.3508 -7.3347 15 14 0.6742 -1.0560 -8.7049 16 1 1.9416 -1.1804 -9.4688 17 1 0.2411 -2.3989 -8.2422 18 1 -0.3748 -0.4712 -9.5783 19 6 2.0324 -0.7104 1.2305 20 6 1.7028 -2.0358 1.4689 21 6 2.1862 -2.6559 2.6056 22 7 2.9432 -1.9988 3.4623 23 6 3.2722 -0.7362 3.2706 24 6 2.8305 -0.0525 2.1536 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6055 -1.7197 -1.2952 29 1 3.1264 -0.7994 -1.2056 30 1 3.5799 0.9223 -5.4002 31 1 2.3369 2.0401 -6.0121 32 1 2.8090 2.0870 -4.2968 33 1 0.4670 1.7303 -8.1813 34 1 1.0791 -2.5779 0.7735 35 1 1.9374 -3.6894 2.7966 36 1 3.8945 -0.2310 3.9943 37 1 3.1037 0.9814 2.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126012002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:09 Heat of formation + Delta-G solvation = -88.229696 kcal Electronic energy + Delta-G solvation = -19254.804215 eV Core-core repulsion = 16188.897566 eV Total energy + Delta-G solvation = -3065.906649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.58951 -40.93060 -38.00857 -36.49734 -35.32767 -32.30063 -32.02212 -31.54231 -29.10489 -27.45599 -25.45955 -24.35407 -23.68470 -21.91589 -20.86139 -18.89383 -18.58085 -17.66919 -17.23531 -17.03820 -16.88367 -16.37384 -16.19065 -15.15099 -14.97051 -14.88415 -14.42922 -14.31776 -14.19610 -13.79970 -13.61670 -13.18543 -12.97983 -12.80145 -12.73644 -12.52989 -12.38358 -12.32653 -12.14658 -11.82043 -11.55645 -11.22402 -10.97232 -10.59493 -10.50219 -10.37465 -10.02833 -8.29360 -6.46223 0.25921 0.29776 1.37127 1.42224 1.43985 1.55180 2.04139 2.41957 2.91291 3.01442 3.53109 3.63278 3.66679 3.88587 4.09815 4.17121 4.24131 4.27536 4.40398 4.54289 4.61242 4.66092 4.77295 4.78692 4.82369 4.88592 4.95647 5.05953 5.11905 5.17665 5.33433 5.47928 5.51153 5.63705 5.82644 5.93701 6.12762 6.59776 6.99884 7.07675 7.26464 8.78235 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040828 B = 0.003669 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.644130 B = 7630.167640 C = 7863.417182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.033 4.033 3 H 0.082 0.918 4 C -0.098 4.098 5 C 0.446 3.554 6 O -0.546 6.546 7 O -0.367 6.367 8 C 0.218 3.782 9 H 0.009 0.991 10 C -0.143 4.143 11 C -0.549 4.549 12 H 0.068 0.932 13 C 0.016 3.984 14 N -0.917 5.917 15 Si 0.983 3.017 16 H -0.267 1.267 17 H -0.264 1.264 18 H -0.278 1.278 19 C -0.035 4.035 20 C -0.168 4.168 21 C 0.091 3.909 22 N -0.516 5.516 23 C 0.091 3.909 24 C -0.172 4.172 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.024 0.976 33 H 0.271 0.729 34 H 0.151 0.849 35 H 0.177 0.823 36 H 0.176 0.824 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 -5.859 17.178 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.052 4.052 3 H 0.101 0.899 4 C -0.135 4.135 5 C 0.291 3.709 6 O -0.437 6.437 7 O -0.284 6.284 8 C 0.164 3.836 9 H 0.027 0.973 10 C -0.200 4.200 11 C -0.587 4.587 12 H 0.086 0.914 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.806 3.194 16 H -0.193 1.193 17 H -0.189 1.189 18 H -0.203 1.203 19 C -0.043 4.043 20 C -0.187 4.187 21 C -0.065 4.065 22 N -0.225 5.225 23 C -0.065 4.065 24 C -0.192 4.192 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.169 0.831 35 H 0.194 0.806 36 H 0.193 0.807 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.309 -5.840 17.784 19.008 hybrid contribution -0.621 0.610 -1.719 1.927 sum 2.688 -5.231 16.064 17.107 Atomic orbital electron populations 1.21934 0.93480 1.02763 1.02411 1.19868 0.96914 0.99042 0.89360 0.89911 1.21529 1.04853 1.00184 0.86921 1.24420 0.75802 0.84309 0.86404 1.90564 1.39074 1.26412 1.87648 1.86476 1.71726 1.54129 1.16024 1.20303 0.93278 0.89588 0.80396 0.97333 1.21988 0.98523 0.98683 1.00855 1.21325 1.48040 0.94655 0.94675 0.91427 1.25838 0.93970 0.96940 1.01647 1.70019 1.45998 1.12323 1.27193 0.85185 0.78337 0.78443 0.77475 1.19251 1.18853 1.20343 1.20206 0.94814 0.94400 0.94896 1.22255 1.01770 0.94999 0.99721 1.23151 0.92604 1.00917 0.89827 1.67705 1.13372 1.10036 1.31403 1.23129 0.96952 0.90185 0.96240 1.22315 0.99002 1.02407 0.95482 0.91211 0.91658 0.93065 0.85736 0.86210 0.93655 0.90180 0.95685 0.92010 0.83091 0.80624 0.80673 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.75 71.99 0.63 -2.99 16 2 C -0.03 -0.77 2.24 -11.54 -0.03 -0.80 16 3 H 0.08 2.07 7.76 -2.39 -0.02 2.05 16 4 C -0.10 -2.52 5.04 29.85 0.15 -2.37 16 5 C 0.45 17.57 7.65 71.23 0.54 18.12 16 6 O -0.55 -24.59 13.19 21.95 0.29 -24.30 16 7 O -0.37 -17.24 9.86 -51.43 -0.51 -17.75 16 8 C 0.22 11.86 2.56 29.85 0.08 11.94 16 9 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 10 C -0.14 -7.33 9.32 71.98 0.67 -6.65 16 11 C -0.55 -31.02 8.90 25.60 0.23 -30.79 16 12 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 13 C 0.02 0.86 5.30 84.66 0.45 1.31 16 14 N -0.92 -52.51 11.32 21.45 0.24 -52.27 16 15 Si 0.98 42.50 29.54 68.60 2.03 44.52 16 16 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 C -0.04 -0.68 4.79 -19.67 -0.09 -0.77 16 20 C -0.17 -2.89 8.89 22.36 0.20 -2.69 16 21 C 0.09 1.59 11.18 84.68 0.95 2.54 16 22 N -0.52 -10.61 10.36 -195.83 -2.03 -12.64 16 23 C 0.09 1.61 11.18 84.68 0.95 2.56 16 24 C -0.17 -3.06 9.76 22.36 0.22 -2.84 16 25 H 0.07 1.44 7.46 -2.39 -0.02 1.43 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.62 5.96 -2.39 -0.01 1.61 16 28 H 0.12 2.68 7.68 -2.39 -0.02 2.67 16 29 H 0.12 2.67 8.14 -2.38 -0.02 2.66 16 30 H 0.04 2.18 8.14 -2.39 -0.02 2.17 16 31 H 0.08 4.42 6.07 -2.39 -0.01 4.41 16 32 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 34 H 0.15 2.06 7.35 -2.91 -0.02 2.04 16 35 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.15 2.14 8.01 -2.91 -0.02 2.12 16 Total: -1.00 -67.81 313.42 6.02 -61.79 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.06 Total: 14.08 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 4.94 Total: -13.44 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -1.79 Total: -64.91 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.22 Total: -42.05 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -67.81 6.02 -61.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126012002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.438 kcal (2) G-P(sol) polarization free energy of solvation -67.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds