Wall clock time and date at job start Mon Mar 30 2020 06:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47319 * 2 1 4 4 C 1.50701 * 109.46997 * 240.00499 * 2 1 3 5 5 H 1.08002 * 119.99894 * 245.63318 * 4 2 1 6 6 C 1.37874 * 120.00320 * 65.62371 * 4 2 1 7 7 N 1.31513 * 120.00316 * 197.18970 * 6 4 2 8 8 Si 1.86810 * 119.99684 * 17.46964 * 6 4 2 9 9 H 1.48496 * 109.46811 * 179.72411 * 8 6 4 10 10 H 1.48500 * 109.46683 * 299.71905 * 8 6 4 11 11 H 1.48497 * 109.47110 * 59.72249 * 8 6 4 12 12 O 1.45202 * 109.47224 * 120.00485 * 2 1 3 13 13 C 1.34228 * 116.99724 * 270.00249 * 12 2 1 14 14 O 1.20826 * 120.00336 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00044 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47590 * 179.97438 * 15 13 12 17 17 H 1.08994 * 109.47165 * 305.00269 * 16 15 13 18 18 C 1.53001 * 109.46651 * 64.99988 * 16 15 13 19 19 C 1.50693 * 109.47277 * 184.99857 * 16 15 13 20 20 C 1.38657 * 120.78997 * 299.71865 * 19 16 15 21 21 C 1.38206 * 119.16147 * 179.75835 * 20 19 16 22 22 N 1.31868 * 120.76279 * 0.53054 * 21 20 19 23 23 C 1.31870 * 121.72769 * 359.74370 * 22 21 20 24 24 C 1.38210 * 120.76274 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.47333 * 66.32908 * 1 2 3 26 26 H 1.08991 * 109.47526 * 186.33136 * 1 2 3 27 27 H 1.09001 * 109.46823 * 306.33282 * 1 2 3 28 28 H 0.96989 * 119.99777 * 355.16928 * 7 6 4 29 29 H 1.08998 * 109.46885 * 299.99671 * 15 13 12 30 30 H 1.09002 * 109.47038 * 59.99252 * 15 13 12 31 31 H 1.09008 * 109.47176 * 180.02562 * 18 16 15 32 32 H 1.09006 * 109.47263 * 299.99565 * 18 16 15 33 33 H 1.08997 * 109.47989 * 60.00083 * 18 16 15 34 34 H 1.07996 * 120.41989 * 0.02562 * 20 19 16 35 35 H 1.08001 * 119.61960 * 180.25659 * 21 20 19 36 36 H 1.07998 * 119.61663 * 180.02562 * 23 22 21 37 37 H 1.08002 * 120.41574 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5761 -1.6384 -1.1341 6 6 1.7975 -0.1755 -2.4794 7 7 1.9222 -0.9277 -3.5510 8 14 1.3098 1.6197 -2.6500 9 1 1.1228 1.9475 -4.0862 10 1 0.0400 1.8593 -1.9182 11 1 2.3788 2.4793 -2.0812 12 8 2.0140 -0.6846 1.1855 13 6 2.2171 0.0639 2.2811 14 8 1.9981 1.2517 2.2504 15 6 2.7193 -0.5772 3.5491 16 6 2.8644 0.4889 4.6369 17 1 3.5037 1.2936 4.2740 18 6 1.4852 1.0515 4.9865 19 6 3.4815 -0.1278 5.8656 20 6 2.8557 -1.1748 6.5249 21 6 3.4542 -1.7186 7.6457 22 7 4.6006 -1.2461 8.0945 23 6 5.2211 -0.2480 7.4963 24 6 4.6857 0.3420 6.3670 25 1 -0.3634 0.4126 -0.9412 26 1 -0.3634 -1.0213 0.1133 27 1 -0.3633 0.6089 0.8279 28 1 2.2468 -1.8380 -3.4694 29 1 2.0105 -1.3374 3.8772 30 1 3.6884 -1.0402 3.3630 31 1 1.5885 1.8114 5.7612 32 1 1.0388 1.4977 4.0978 33 1 0.8457 0.2469 5.3494 34 1 1.9147 -1.5634 6.1646 35 1 2.9753 -2.5371 8.1626 36 1 6.1590 0.1119 7.8929 37 1 5.1985 1.1594 5.8817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126012221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:12 Heat of formation + Delta-G solvation = -69.846094 kcal Electronic energy + Delta-G solvation = -19331.840773 eV Core-core repulsion = 16266.731296 eV Total energy + Delta-G solvation = -3065.109477 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59717 -39.74816 -36.67204 -35.31772 -33.28334 -31.50222 -31.17977 -30.42833 -28.06103 -25.00153 -24.54418 -23.62723 -22.06921 -20.47552 -19.53698 -17.82318 -17.38117 -16.62319 -16.36893 -15.72285 -15.65561 -15.39087 -14.29622 -14.24356 -13.81159 -13.65436 -13.51909 -13.13019 -12.80608 -12.63763 -12.35430 -12.03362 -11.81241 -11.55669 -11.43548 -11.40374 -10.94450 -10.59796 -10.13380 -9.99503 -9.81062 -9.76137 -9.67480 -9.61928 -9.35557 -8.98787 -8.38848 -6.67746 -4.28184 0.93280 1.03856 2.77102 3.28769 3.36570 3.39262 3.52562 3.64120 4.25889 4.33282 4.44369 4.47812 4.79033 4.91314 4.94205 4.97047 5.08044 5.19434 5.44515 5.51570 5.53759 5.57580 5.61850 5.75029 5.86227 5.95622 6.15505 6.22670 6.30649 6.40804 6.45409 6.49922 6.67646 7.12004 7.34575 7.76553 7.78497 8.20797 8.43719 8.80224 9.39998 10.75307 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040480 B = 0.003872 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.531710 B = 7229.778590 C = 7350.724642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.195 3.805 3 H 0.038 0.962 4 C -0.609 4.609 5 H 0.068 0.932 6 C 0.039 3.961 7 N -0.893 5.893 8 Si 1.039 2.961 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.278 1.278 12 O -0.345 6.345 13 C 0.453 3.547 14 O -0.521 6.521 15 C -0.109 4.109 16 C -0.042 4.042 17 H 0.093 0.907 18 C -0.151 4.151 19 C -0.028 4.028 20 C -0.168 4.168 21 C 0.098 3.902 22 N -0.492 5.492 23 C 0.098 3.902 24 C -0.169 4.169 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.030 0.970 28 H 0.271 0.729 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.135 0.865 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 1.662 19.911 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.141 3.859 3 H 0.056 0.944 4 C -0.647 4.647 5 H 0.086 0.914 6 C -0.167 4.167 7 N -0.526 5.526 8 Si 0.866 3.134 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.204 1.204 12 O -0.261 6.261 13 C 0.296 3.704 14 O -0.412 6.412 15 C -0.147 4.147 16 C -0.061 4.061 17 H 0.112 0.888 18 C -0.208 4.208 19 C -0.036 4.036 20 C -0.187 4.187 21 C -0.059 4.059 22 N -0.201 5.201 23 C -0.059 4.059 24 C -0.189 4.189 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.665 2.758 19.460 19.725 hybrid contribution 0.111 -0.812 0.294 0.871 sum 1.776 1.945 19.754 19.929 Atomic orbital electron populations 1.22567 0.98020 1.01025 1.00996 1.20876 0.90953 0.93983 0.80044 0.94430 1.21928 1.41978 1.11032 0.89731 0.91399 1.25683 0.94512 1.05208 0.91328 1.70864 1.40675 1.10131 1.30938 0.84127 0.77583 0.75001 0.76679 1.20396 1.19766 1.20441 1.86554 1.75555 1.43083 1.20874 1.23357 0.74784 0.86065 0.86207 1.90557 1.49087 1.16900 1.84640 1.21397 1.03991 0.98988 0.90352 1.20005 0.98715 0.97027 0.90343 0.88849 1.21986 0.94824 1.00891 1.03074 1.20322 0.93724 0.94108 0.95415 1.22066 1.01719 0.97628 0.97313 1.22752 0.91399 0.98148 0.93565 1.67667 1.09190 1.11622 1.31656 1.22751 0.99008 0.91866 0.92241 1.22131 0.96457 1.01966 0.98300 0.90960 0.92706 0.95070 0.91818 0.87983 0.87972 0.92580 0.89762 0.92786 0.84672 0.82804 0.82813 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 9.22 37.16 0.34 -3.48 16 2 C 0.20 4.89 2.14 -27.88 -0.06 4.83 16 3 H 0.04 0.98 5.81 -51.93 -0.30 0.68 16 4 C -0.61 -17.38 9.16 -34.44 -0.32 -17.69 16 5 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 6 C 0.04 1.11 5.29 -17.82 -0.09 1.02 16 7 N -0.89 -26.84 13.70 55.43 0.76 -26.08 16 8 Si 1.04 24.82 26.29 -169.99 -4.47 20.35 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.27 -5.99 5.76 56.52 0.33 -5.66 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 O -0.35 -7.81 9.86 -39.25 -0.39 -8.20 16 13 C 0.45 8.49 7.65 36.01 0.28 8.77 16 14 O -0.52 -10.70 13.19 -18.75 -0.25 -10.94 16 15 C -0.11 -1.44 5.04 -27.88 -0.14 -1.58 16 16 C -0.04 -0.49 2.24 -91.78 -0.21 -0.70 16 17 H 0.09 1.15 7.76 -51.93 -0.40 0.75 16 18 C -0.15 -1.74 8.75 37.16 0.33 -1.42 16 19 C -0.03 -0.29 4.79 -104.32 -0.50 -0.79 16 20 C -0.17 -1.59 8.90 -39.44 -0.35 -1.94 16 21 C 0.10 0.94 11.18 -17.55 -0.20 0.75 16 22 N -0.49 -5.47 10.36 -13.25 -0.14 -5.61 16 23 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 24 C -0.17 -1.63 9.76 -39.44 -0.39 -2.01 16 25 H 0.07 1.66 4.88 -51.93 -0.25 1.40 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.27 8.10 8.73 -40.82 -0.36 7.75 16 29 H 0.10 1.15 7.68 -51.93 -0.40 0.75 16 30 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.08 1.19 5.96 -51.93 -0.31 0.88 16 33 H 0.05 0.55 7.47 -51.93 -0.39 0.16 16 34 H 0.14 1.06 7.35 -52.49 -0.39 0.67 16 35 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.14 1.08 8.01 -52.49 -0.42 0.66 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -32.17 309.07 -6.37 -38.54 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.05 Total: 0.77 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -1.50 Total: -13.48 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.62 Total: -31.69 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.63 Total: -19.15 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -4.47 Total: 20.35 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.17 -6.37 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126012221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.307 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds