Wall clock time and date at job start Mon Mar 30 2020 06:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47319 * 2 1 4 4 C 1.50701 * 109.46997 * 240.00499 * 2 1 3 5 5 H 1.08002 * 119.99894 * 245.63318 * 4 2 1 6 6 C 1.37874 * 120.00320 * 65.62371 * 4 2 1 7 7 N 1.31513 * 120.00316 * 197.18970 * 6 4 2 8 8 Si 1.86810 * 119.99684 * 17.46964 * 6 4 2 9 9 H 1.48496 * 109.46811 * 179.72411 * 8 6 4 10 10 H 1.48500 * 109.46683 * 299.71905 * 8 6 4 11 11 H 1.48497 * 109.47110 * 59.72249 * 8 6 4 12 12 O 1.45202 * 109.47224 * 120.00485 * 2 1 3 13 13 C 1.34228 * 116.99724 * 270.00249 * 12 2 1 14 14 O 1.20826 * 120.00336 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00044 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47590 * 179.97438 * 15 13 12 17 17 H 1.08994 * 109.47165 * 305.00269 * 16 15 13 18 18 C 1.53001 * 109.46651 * 64.99988 * 16 15 13 19 19 C 1.50693 * 109.47277 * 184.99857 * 16 15 13 20 20 C 1.38657 * 120.78997 * 299.71865 * 19 16 15 21 21 C 1.38206 * 119.16147 * 179.75835 * 20 19 16 22 22 N 1.31868 * 120.76279 * 0.53054 * 21 20 19 23 23 C 1.31870 * 121.72769 * 359.74370 * 22 21 20 24 24 C 1.38210 * 120.76274 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.47333 * 66.32908 * 1 2 3 26 26 H 1.08991 * 109.47526 * 186.33136 * 1 2 3 27 27 H 1.09001 * 109.46823 * 306.33282 * 1 2 3 28 28 H 0.96989 * 119.99777 * 355.16928 * 7 6 4 29 29 H 1.08998 * 109.46885 * 299.99671 * 15 13 12 30 30 H 1.09002 * 109.47038 * 59.99252 * 15 13 12 31 31 H 1.09008 * 109.47176 * 180.02562 * 18 16 15 32 32 H 1.09006 * 109.47263 * 299.99565 * 18 16 15 33 33 H 1.08997 * 109.47989 * 60.00083 * 18 16 15 34 34 H 1.07996 * 120.41989 * 0.02562 * 20 19 16 35 35 H 1.08001 * 119.61960 * 180.25659 * 21 20 19 36 36 H 1.07998 * 119.61663 * 180.02562 * 23 22 21 37 37 H 1.08002 * 120.41574 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5761 -1.6384 -1.1341 6 6 1.7975 -0.1755 -2.4794 7 7 1.9222 -0.9277 -3.5510 8 14 1.3098 1.6197 -2.6500 9 1 1.1228 1.9475 -4.0862 10 1 0.0400 1.8593 -1.9182 11 1 2.3788 2.4793 -2.0812 12 8 2.0140 -0.6846 1.1855 13 6 2.2171 0.0639 2.2811 14 8 1.9981 1.2517 2.2504 15 6 2.7193 -0.5772 3.5491 16 6 2.8644 0.4889 4.6369 17 1 3.5037 1.2936 4.2740 18 6 1.4852 1.0515 4.9865 19 6 3.4815 -0.1278 5.8656 20 6 2.8557 -1.1748 6.5249 21 6 3.4542 -1.7186 7.6457 22 7 4.6006 -1.2461 8.0945 23 6 5.2211 -0.2480 7.4963 24 6 4.6857 0.3420 6.3670 25 1 -0.3634 0.4126 -0.9412 26 1 -0.3634 -1.0213 0.1133 27 1 -0.3633 0.6089 0.8279 28 1 2.2468 -1.8380 -3.4694 29 1 2.0105 -1.3374 3.8772 30 1 3.6884 -1.0402 3.3630 31 1 1.5885 1.8114 5.7612 32 1 1.0388 1.4977 4.0978 33 1 0.8457 0.2469 5.3494 34 1 1.9147 -1.5634 6.1646 35 1 2.9753 -2.5371 8.1626 36 1 6.1590 0.1119 7.8929 37 1 5.1985 1.1594 5.8817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126012221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:12 Heat of formation + Delta-G solvation = -89.162840 kcal Electronic energy + Delta-G solvation = -19332.678409 eV Core-core repulsion = 16266.731296 eV Total energy + Delta-G solvation = -3065.947114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66829 -40.98714 -38.11290 -36.53773 -35.37320 -32.63703 -32.16763 -31.83053 -29.16022 -27.02660 -25.47223 -24.37026 -23.57309 -21.81634 -20.95297 -19.85195 -18.78851 -17.81740 -17.20627 -17.04845 -16.86251 -16.40949 -15.81390 -15.18255 -15.08799 -14.94281 -14.81783 -14.42413 -14.21550 -14.07917 -13.88323 -13.55552 -13.20480 -12.76306 -12.59914 -12.51771 -12.35582 -12.06698 -11.83080 -11.74060 -11.59424 -11.28081 -11.04340 -10.57956 -10.51802 -10.39212 -10.04863 -8.95654 -6.57695 0.23937 0.27926 1.28317 1.39592 1.46513 1.65515 1.97254 2.34851 2.89011 2.89674 3.48030 3.60852 3.64503 3.85996 4.02361 4.12806 4.21940 4.25354 4.27043 4.38642 4.53157 4.59170 4.62076 4.64477 4.76838 4.82908 4.91584 4.93611 5.04627 5.11704 5.28446 5.32588 5.45112 5.50476 5.80703 5.83691 5.96101 6.37625 6.90658 7.05973 7.20871 8.46690 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040480 B = 0.003872 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.531710 B = 7229.778590 C = 7350.724642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.195 3.805 3 H 0.032 0.968 4 C -0.620 4.620 5 H 0.029 0.971 6 C -0.004 4.004 7 N -0.919 5.919 8 Si 1.074 2.926 9 H -0.274 1.274 10 H -0.239 1.239 11 H -0.269 1.269 12 O -0.364 6.364 13 C 0.448 3.552 14 O -0.538 6.538 15 C -0.100 4.100 16 C -0.034 4.034 17 H 0.083 0.917 18 C -0.148 4.148 19 C -0.036 4.036 20 C -0.168 4.168 21 C 0.090 3.910 22 N -0.516 5.516 23 C 0.090 3.910 24 C -0.173 4.173 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.258 0.742 29 H 0.127 0.873 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.153 0.847 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 2.493 21.836 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.140 3.860 3 H 0.049 0.951 4 C -0.658 4.658 5 H 0.048 0.952 6 C -0.204 4.204 7 N -0.553 5.553 8 Si 0.894 3.106 9 H -0.199 1.199 10 H -0.163 1.163 11 H -0.194 1.194 12 O -0.280 6.280 13 C 0.293 3.707 14 O -0.429 6.429 15 C -0.137 4.137 16 C -0.052 4.052 17 H 0.101 0.899 18 C -0.205 4.205 19 C -0.044 4.044 20 C -0.187 4.187 21 C -0.066 4.066 22 N -0.226 5.226 23 C -0.066 4.066 24 C -0.193 4.193 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.145 0.855 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.171 0.829 35 H 0.194 0.806 36 H 0.192 0.808 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.052 3.573 21.419 21.740 hybrid contribution 0.385 -1.141 -0.211 1.223 sum 1.437 2.432 21.208 21.396 Atomic orbital electron populations 1.22438 0.95966 1.01705 1.01784 1.20607 0.92374 0.92961 0.80015 0.95080 1.22083 1.41714 1.09915 0.92076 0.95212 1.27067 0.93873 1.08540 0.90925 1.70976 1.42546 1.09824 1.31927 0.83715 0.79155 0.70277 0.77475 1.19879 1.16348 1.19379 1.86537 1.76288 1.43783 1.21380 1.24394 0.73940 0.85971 0.86423 1.90550 1.49732 1.17798 1.84832 1.21541 1.04805 0.99710 0.87671 1.19885 0.98751 0.96264 0.90340 0.89851 1.21937 0.94847 1.01622 1.02089 1.20229 0.94235 0.94809 0.95137 1.22260 1.02247 0.97141 0.97059 1.23162 0.91109 0.98600 0.93728 1.67700 1.10045 1.12370 1.32472 1.23124 0.99731 0.91544 0.92191 1.22323 0.96346 1.02276 0.98356 0.91199 0.92500 0.92784 0.93229 0.85473 0.86857 0.91683 0.92449 0.91130 0.82908 0.80641 0.80776 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.04 9.22 71.98 0.66 -6.38 16 2 C 0.19 9.67 2.14 29.85 0.06 9.73 16 3 H 0.03 1.59 5.81 -2.39 -0.01 1.58 16 4 C -0.62 -36.08 9.16 25.60 0.23 -35.85 16 5 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 6 C 0.00 -0.21 5.29 84.65 0.45 0.24 16 7 N -0.92 -56.33 13.70 21.45 0.29 -56.04 16 8 Si 1.07 49.03 26.29 68.60 1.80 50.84 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.24 -9.66 5.76 99.48 0.57 -9.09 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 O -0.36 -16.29 9.86 -51.39 -0.51 -16.79 16 13 C 0.45 16.24 7.65 71.24 0.54 16.79 16 14 O -0.54 -21.48 13.19 21.96 0.29 -21.19 16 15 C -0.10 -2.41 5.04 29.85 0.15 -2.26 16 16 C -0.03 -0.71 2.24 -11.54 -0.03 -0.74 16 17 H 0.08 1.93 7.76 -2.39 -0.02 1.91 16 18 C -0.15 -3.10 8.75 71.98 0.63 -2.47 16 19 C -0.04 -0.66 4.79 -19.67 -0.09 -0.75 16 20 C -0.17 -2.70 8.90 22.36 0.20 -2.50 16 21 C 0.09 1.52 11.18 84.68 0.95 2.46 16 22 N -0.52 -10.47 10.36 -195.84 -2.03 -12.49 16 23 C 0.09 1.57 11.18 84.68 0.95 2.52 16 24 C -0.17 -2.98 9.76 22.36 0.22 -2.76 16 25 H 0.07 3.05 4.88 -2.38 -0.01 3.04 16 26 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.26 16.02 8.73 -92.72 -0.81 15.21 16 29 H 0.13 2.46 7.68 -2.39 -0.02 2.44 16 30 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.06 1.53 5.96 -2.38 -0.01 1.52 16 33 H 0.07 1.22 7.47 -2.39 -0.02 1.20 16 34 H 0.15 1.84 7.35 -2.91 -0.02 1.82 16 35 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.15 2.07 8.01 -2.91 -0.02 2.04 16 Total: -1.00 -70.11 309.07 5.67 -64.44 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.89 Total: 13.21 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.93 Total: -21.97 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -1.74 Total: -68.53 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.22 Total: -37.98 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 1.80 Total: 50.84 kcal Total: -70.11 5.67 -64.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126012221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.719 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds