Wall clock time and date at job start Mon Mar 30 2020 06:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47271 * 119.99753 * 8 6 4 11 11 H 1.48496 * 109.47166 * 239.99582 * 8 6 4 12 12 O 1.45200 * 109.46978 * 240.00100 * 2 1 3 13 13 C 1.34232 * 117.00067 * 89.99944 * 12 2 1 14 14 O 1.20827 * 119.99576 * 359.97438 * 13 12 2 15 15 C 1.50692 * 120.00115 * 180.02562 * 13 12 2 16 16 C 1.53008 * 109.47286 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.46873 * 54.99786 * 16 15 13 18 18 C 1.52995 * 109.46878 * 295.00094 * 16 15 13 19 19 C 1.50702 * 109.47128 * 174.99909 * 16 15 13 20 20 C 1.38642 * 120.78813 * 59.71807 * 19 16 15 21 21 C 1.38210 * 119.16201 * 179.75513 * 20 19 16 22 22 N 1.31869 * 120.76120 * 0.52963 * 21 20 19 23 23 C 1.31871 * 121.72515 * 359.74470 * 22 21 20 24 24 C 1.38208 * 120.76811 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 29 29 H 1.09008 * 109.47416 * 300.00104 * 15 13 12 30 30 H 1.09000 * 109.47506 * 60.00144 * 15 13 12 31 31 H 1.08995 * 109.47444 * 59.99531 * 18 16 15 32 32 H 1.08995 * 109.47289 * 180.02562 * 18 16 15 33 33 H 1.09008 * 109.46921 * 299.99687 * 18 16 15 34 34 H 1.08002 * 120.42528 * 0.02562 * 20 19 16 35 35 H 1.07997 * 119.62070 * 180.29480 * 21 20 19 36 36 H 1.08002 * 119.61542 * 179.97438 * 23 22 21 37 37 H 1.07992 * 120.42415 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.1455 -2.2877 3.6037 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 8 2.0139 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9972 1.2518 -2.2506 15 6 2.7181 -0.5771 -3.5495 16 6 2.8634 0.4892 -4.6371 17 1 3.5036 1.2933 -4.2743 18 6 1.4846 1.0530 -4.9859 19 6 3.4795 -0.1277 -5.8663 20 6 2.8584 -1.1816 -6.5188 21 6 3.4507 -1.7187 -7.6462 22 7 4.5972 -1.2469 -8.0954 23 6 5.2187 -0.2495 -7.4973 24 6 4.6839 0.3415 -6.3682 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 0.7095 1.1617 3.4844 29 1 3.6870 -1.0409 -3.3641 30 1 2.0086 -1.3368 -3.8775 31 1 1.0389 1.4992 -4.0969 32 1 1.5880 1.8123 -5.7611 33 1 0.8443 0.2488 -5.3488 34 1 1.9214 -1.5752 -6.1533 35 1 2.9709 -2.5367 -8.1629 36 1 6.1567 0.1098 -7.8943 37 1 5.1974 1.1582 -5.8830 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126012440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:15 Heat of formation + Delta-G solvation = -70.951965 kcal Electronic energy + Delta-G solvation = -19257.351270 eV Core-core repulsion = 16192.193840 eV Total energy + Delta-G solvation = -3065.157431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52226 -39.56535 -36.51067 -35.17155 -33.28859 -31.44217 -31.07510 -29.71378 -27.87685 -25.35175 -24.50545 -23.57731 -22.08350 -20.52316 -19.42390 -17.42792 -16.74196 -16.45977 -16.25838 -15.66562 -15.40484 -15.26473 -14.49305 -14.19196 -13.96545 -13.58803 -13.45012 -12.98064 -12.65196 -12.24966 -12.01660 -11.82647 -11.53654 -11.31087 -11.16004 -11.07451 -10.86289 -10.84107 -10.38643 -10.30672 -9.73300 -9.63041 -9.56224 -9.50532 -9.30723 -8.92634 -8.52389 -6.21418 -4.28307 0.98087 1.09289 2.95424 3.21578 3.28331 3.33015 3.55741 3.71118 4.29228 4.30740 4.52792 4.57041 4.87089 4.97411 5.00264 5.04639 5.11877 5.28333 5.51225 5.60051 5.62634 5.69198 5.75353 5.82721 5.94509 6.05441 6.30561 6.38771 6.54851 6.61995 6.84985 6.88380 7.15123 7.57662 7.69872 7.81014 7.91396 8.11500 8.60655 8.85971 9.37487 10.86072 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038588 B = 0.003688 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.444234 B = 7590.138119 C = 7864.232278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.357 6.357 13 C 0.453 3.547 14 O -0.519 6.519 15 C -0.109 4.109 16 C -0.042 4.042 17 H 0.093 0.907 18 C -0.151 4.151 19 C -0.027 4.027 20 C -0.167 4.167 21 C 0.097 3.903 22 N -0.493 5.493 23 C 0.097 3.903 24 C -0.169 4.169 25 H 0.036 0.964 26 H 0.099 0.901 27 H 0.016 0.984 28 H 0.266 0.734 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.855 -2.438 -16.755 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.273 6.273 13 C 0.296 3.704 14 O -0.410 6.410 15 C -0.147 4.147 16 C -0.061 4.061 17 H 0.111 0.889 18 C -0.208 4.208 19 C -0.035 4.035 20 C -0.187 4.187 21 C -0.059 4.059 22 N -0.202 5.202 23 C -0.059 4.059 24 C -0.189 4.189 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.060 -2.356 -17.288 17.914 hybrid contribution -0.172 0.089 1.661 1.673 sum 3.888 -2.267 -15.627 16.262 Atomic orbital electron populations 1.22156 0.97571 1.00089 1.01401 1.20637 0.91376 0.93914 0.77835 0.93542 1.21077 1.32440 1.13478 0.88935 0.91279 1.24894 0.94921 0.95101 0.99104 1.69910 1.36136 1.22572 1.24090 0.86220 0.78648 0.79507 0.81779 1.19468 1.20729 1.20693 1.86488 1.75676 1.43744 1.21433 1.23221 0.74973 0.86034 0.86176 1.90567 1.48876 1.16924 1.84634 1.21390 1.03854 0.98902 0.90597 1.20007 0.98697 0.97072 0.90310 0.88891 1.21982 0.94833 1.00838 1.03110 1.20348 0.93674 0.93978 0.95471 1.22067 1.01801 0.97566 0.97281 1.22746 0.91432 0.98199 0.93536 1.67664 1.09117 1.11635 1.31795 1.22742 0.99027 0.91885 0.92272 1.22131 0.96452 1.02019 0.98277 0.94459 0.88257 0.96529 0.92443 0.88147 0.88131 0.89644 0.92675 0.92848 0.84656 0.82839 0.82858 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.33 37.16 0.35 -3.52 16 2 C 0.21 5.70 2.56 -27.88 -0.07 5.63 16 3 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -14.57 8.90 -34.44 -0.31 -14.87 16 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 8 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 O -0.36 -8.32 9.86 -39.26 -0.39 -8.70 16 13 C 0.45 8.90 7.65 36.00 0.28 9.18 16 14 O -0.52 -11.38 13.19 -18.75 -0.25 -11.63 16 15 C -0.11 -1.50 5.03 -27.88 -0.14 -1.64 16 16 C -0.04 -0.52 2.24 -91.77 -0.21 -0.72 16 17 H 0.09 1.21 7.76 -51.93 -0.40 0.81 16 18 C -0.15 -1.86 8.76 37.16 0.33 -1.54 16 19 C -0.03 -0.29 4.80 -104.32 -0.50 -0.79 16 20 C -0.17 -1.65 8.89 -39.44 -0.35 -2.00 16 21 C 0.10 0.97 11.18 -17.55 -0.20 0.77 16 22 N -0.49 -5.61 10.36 -13.25 -0.14 -5.74 16 23 C 0.10 0.97 11.18 -17.55 -0.20 0.77 16 24 C -0.17 -1.69 9.76 -39.44 -0.39 -2.08 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.10 2.67 6.07 -51.93 -0.32 2.35 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 30 H 0.10 1.19 7.65 -51.93 -0.40 0.79 16 31 H 0.08 1.30 5.95 -51.93 -0.31 0.99 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.58 7.50 -51.92 -0.39 0.19 16 34 H 0.14 1.12 7.35 -52.49 -0.39 0.73 16 35 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.14 1.13 8.01 -52.49 -0.42 0.71 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -31.17 313.42 -7.01 -38.18 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.07 Total: 0.95 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -1.50 Total: -9.22 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.49 Total: -30.23 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.63 Total: -20.33 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.17 -7.01 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126012440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.772 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds