Wall clock time and date at job start Mon Mar 30 2020 06:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47271 * 119.99753 * 8 6 4 11 11 H 1.48496 * 109.47166 * 239.99582 * 8 6 4 12 12 O 1.45200 * 109.46978 * 240.00100 * 2 1 3 13 13 C 1.34232 * 117.00067 * 89.99944 * 12 2 1 14 14 O 1.20827 * 119.99576 * 359.97438 * 13 12 2 15 15 C 1.50692 * 120.00115 * 180.02562 * 13 12 2 16 16 C 1.53008 * 109.47286 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.46873 * 54.99786 * 16 15 13 18 18 C 1.52995 * 109.46878 * 295.00094 * 16 15 13 19 19 C 1.50702 * 109.47128 * 174.99909 * 16 15 13 20 20 C 1.38642 * 120.78813 * 59.71807 * 19 16 15 21 21 C 1.38210 * 119.16201 * 179.75513 * 20 19 16 22 22 N 1.31869 * 120.76120 * 0.52963 * 21 20 19 23 23 C 1.31871 * 121.72515 * 359.74470 * 22 21 20 24 24 C 1.38208 * 120.76811 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 29 29 H 1.09008 * 109.47416 * 300.00104 * 15 13 12 30 30 H 1.09000 * 109.47506 * 60.00144 * 15 13 12 31 31 H 1.08995 * 109.47444 * 59.99531 * 18 16 15 32 32 H 1.08995 * 109.47289 * 180.02562 * 18 16 15 33 33 H 1.09008 * 109.46921 * 299.99687 * 18 16 15 34 34 H 1.08002 * 120.42528 * 0.02562 * 20 19 16 35 35 H 1.07997 * 119.62070 * 180.29480 * 21 20 19 36 36 H 1.08002 * 119.61542 * 179.97438 * 23 22 21 37 37 H 1.07992 * 120.42415 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.1455 -2.2877 3.6037 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 8 2.0139 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9972 1.2518 -2.2506 15 6 2.7181 -0.5771 -3.5495 16 6 2.8634 0.4892 -4.6371 17 1 3.5036 1.2933 -4.2743 18 6 1.4846 1.0530 -4.9859 19 6 3.4795 -0.1277 -5.8663 20 6 2.8584 -1.1816 -6.5188 21 6 3.4507 -1.7187 -7.6462 22 7 4.5972 -1.2469 -8.0954 23 6 5.2187 -0.2495 -7.4973 24 6 4.6839 0.3415 -6.3682 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 0.7095 1.1617 3.4844 29 1 3.6870 -1.0409 -3.3641 30 1 2.0086 -1.3368 -3.8775 31 1 1.0389 1.4992 -4.0969 32 1 1.5880 1.8123 -5.7611 33 1 0.8443 0.2488 -5.3488 34 1 1.9214 -1.5752 -6.1533 35 1 2.9709 -2.5367 -8.1629 36 1 6.1567 0.1098 -7.8943 37 1 5.1974 1.1582 -5.8830 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126012440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:14 Heat of formation + Delta-G solvation = -88.290832 kcal Electronic energy + Delta-G solvation = -19258.103140 eV Core-core repulsion = 16192.193840 eV Total energy + Delta-G solvation = -3065.909300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.59046 -40.93092 -38.00743 -36.49779 -35.32976 -32.29951 -32.02189 -31.54737 -29.09276 -27.46042 -25.46393 -24.35689 -23.68424 -21.89284 -20.88112 -18.89803 -18.58194 -17.72734 -17.14606 -17.03675 -16.88619 -16.38594 -16.18689 -15.18248 -15.02542 -14.88201 -14.42720 -14.23469 -14.07273 -14.02895 -13.49403 -13.23480 -12.95810 -12.81549 -12.73029 -12.53612 -12.38161 -12.33999 -12.14838 -11.81292 -11.54171 -11.20332 -10.97710 -10.60756 -10.49962 -10.37753 -10.02911 -8.29800 -6.46528 0.25848 0.29768 1.37175 1.41805 1.42392 1.56171 2.04185 2.41707 2.91252 3.01056 3.53024 3.63104 3.66623 3.89222 4.09201 4.17758 4.23978 4.27405 4.40352 4.54642 4.61192 4.66431 4.77783 4.78639 4.83177 4.88978 4.95490 5.06131 5.11996 5.18407 5.33609 5.48039 5.51035 5.64234 5.82592 5.93926 6.12686 6.59722 6.99896 7.07611 7.26278 8.78015 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038588 B = 0.003688 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.444234 B = 7590.138119 C = 7864.232278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.217 3.783 3 H 0.008 0.992 4 C -0.549 4.549 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.982 3.018 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.271 1.271 12 O -0.367 6.367 13 C 0.446 3.554 14 O -0.546 6.546 15 C -0.097 4.097 16 C -0.034 4.034 17 H 0.080 0.920 18 C -0.148 4.148 19 C -0.035 4.035 20 C -0.167 4.167 21 C 0.091 3.909 22 N -0.516 5.516 23 C 0.091 3.909 24 C -0.174 4.174 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.025 0.975 28 H 0.271 0.729 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.177 0.823 36 H 0.176 0.824 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 -3.900 -17.527 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.587 4.587 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.806 3.194 9 H -0.187 1.187 10 H -0.201 1.201 11 H -0.197 1.197 12 O -0.284 6.284 13 C 0.291 3.709 14 O -0.437 6.437 15 C -0.135 4.135 16 C -0.053 4.053 17 H 0.099 0.901 18 C -0.205 4.205 19 C -0.043 4.043 20 C -0.187 4.187 21 C -0.065 4.065 22 N -0.225 5.225 23 C -0.065 4.065 24 C -0.193 4.193 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.146 0.854 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.195 0.805 36 H 0.193 0.807 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.583 -3.815 -18.087 19.045 hybrid contribution -0.324 0.602 1.806 1.931 sum 4.259 -3.213 -16.282 17.133 Atomic orbital electron populations 1.21973 0.96764 1.00372 1.00844 1.20309 0.91999 0.92034 0.79260 0.97428 1.21355 1.33328 1.13874 0.90096 0.91510 1.25830 0.94720 0.95672 1.02170 1.70025 1.36658 1.23669 1.25152 0.85139 0.78358 0.78431 0.77511 1.18723 1.20133 1.19669 1.86477 1.76227 1.43988 1.21663 1.24417 0.73974 0.85896 0.86645 1.90563 1.49857 1.18316 1.84962 1.21531 1.04929 0.99523 0.87496 1.19873 0.98507 0.96335 0.90543 0.90145 1.21927 0.95090 1.01624 1.01857 1.20211 0.94253 0.94770 0.95093 1.22257 1.02298 0.97040 0.97075 1.23165 0.91107 0.98618 0.93605 1.67704 1.09947 1.12332 1.32542 1.23116 0.99752 0.91521 0.92125 1.22314 0.96308 1.02319 0.98387 0.93582 0.90239 0.95577 0.92009 0.86501 0.85436 0.92944 0.91725 0.91038 0.82921 0.80548 0.80736 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.23 9.33 71.98 0.67 -6.56 16 2 C 0.22 11.84 2.56 29.85 0.08 11.91 16 3 H 0.01 0.48 7.16 -2.39 -0.02 0.47 16 4 C -0.55 -31.07 8.90 25.60 0.23 -30.84 16 5 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -52.47 11.32 21.45 0.24 -52.23 16 8 Si 0.98 42.62 29.54 68.60 2.03 44.64 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 O -0.37 -17.24 9.86 -51.44 -0.51 -17.74 16 13 C 0.45 17.57 7.65 71.23 0.54 18.11 16 14 O -0.55 -24.58 13.19 21.96 0.29 -24.29 16 15 C -0.10 -2.51 5.03 29.85 0.15 -2.36 16 16 C -0.03 -0.79 2.24 -11.54 -0.03 -0.81 16 17 H 0.08 2.06 7.76 -2.39 -0.02 2.04 16 18 C -0.15 -3.51 8.76 71.98 0.63 -2.88 16 19 C -0.04 -0.68 4.80 -19.67 -0.09 -0.78 16 20 C -0.17 -2.83 8.89 22.36 0.20 -2.63 16 21 C 0.09 1.58 11.18 84.68 0.95 2.52 16 22 N -0.52 -10.65 10.36 -195.84 -2.03 -12.68 16 23 C 0.09 1.63 11.18 84.68 0.95 2.58 16 24 C -0.17 -3.15 9.76 22.36 0.22 -2.93 16 25 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.08 4.37 6.07 -2.39 -0.01 4.36 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 30 H 0.13 2.64 7.65 -2.39 -0.02 2.63 16 31 H 0.05 1.61 5.95 -2.39 -0.01 1.59 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.40 7.50 -2.38 -0.02 1.39 16 34 H 0.15 1.98 7.35 -2.91 -0.02 1.96 16 35 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 36 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.15 2.22 8.01 -2.91 -0.02 2.19 16 Total: -1.00 -67.98 313.42 6.02 -61.96 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.06 Total: 13.68 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 4.94 Total: -13.35 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -1.79 Total: -64.90 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.22 Total: -42.04 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -67.98 6.02 -61.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126012440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.330 kcal (2) G-P(sol) polarization free energy of solvation -67.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds