Wall clock time and date at job start Mon Mar 30 2020 06:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 O 1.45195 * 109.47245 * 120.00082 * 2 1 3 13 13 C 1.34231 * 117.00311 * 270.00407 * 12 2 1 14 14 O 1.20821 * 119.99670 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00187 * 179.97438 * 13 12 2 16 16 C 1.52995 * 109.47270 * 179.97438 * 15 13 12 17 17 H 1.08997 * 109.47193 * 54.99567 * 16 15 13 18 18 C 1.53005 * 109.46994 * 295.00116 * 16 15 13 19 19 C 1.50698 * 109.47263 * 175.00301 * 16 15 13 20 20 C 1.38642 * 120.79083 * 59.71676 * 19 16 15 21 21 C 1.38210 * 119.15960 * 179.75949 * 20 19 16 22 22 N 1.31866 * 120.76493 * 0.53093 * 21 20 19 23 23 C 1.31865 * 121.72417 * 359.73879 * 22 21 20 24 24 C 1.38199 * 120.76850 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 27 27 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 28 28 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 29 29 H 1.09005 * 109.46766 * 299.99754 * 15 13 12 30 30 H 1.09004 * 109.47002 * 59.99696 * 15 13 12 31 31 H 1.09000 * 109.47202 * 59.99802 * 18 16 15 32 32 H 1.08994 * 109.46978 * 179.97438 * 18 16 15 33 33 H 1.08999 * 109.46808 * 300.00288 * 18 16 15 34 34 H 1.07998 * 120.42217 * 0.02562 * 20 19 16 35 35 H 1.08000 * 119.61601 * 180.29848 * 21 20 19 36 36 H 1.08007 * 119.61756 * 180.02562 * 23 22 21 37 37 H 1.07997 * 120.42494 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 8 2.0141 -0.6845 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7183 -0.5773 3.5495 16 6 2.8636 0.4888 4.6371 17 1 1.9162 1.0136 4.7603 18 6 3.9502 1.4866 4.2313 19 6 3.2463 -0.1692 5.9377 20 6 4.4146 -0.9082 6.0424 21 6 4.7354 -1.4931 7.2528 22 7 3.9399 -1.3632 8.2965 23 6 2.8185 -0.6724 8.2320 24 6 2.4354 -0.0547 7.0566 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 1.9111 -0.5221 -4.4375 29 1 2.0087 -1.3371 3.8774 30 1 3.6872 -1.0410 3.3639 31 1 3.6735 1.9626 3.2906 32 1 4.0534 2.2464 5.0059 33 1 4.8976 0.9618 4.1080 34 1 5.0681 -1.0218 5.1900 35 1 5.6461 -2.0663 7.3439 36 1 2.1926 -0.5878 9.1081 37 1 1.5160 0.5100 7.0100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126012621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:17 Heat of formation + Delta-G solvation = -61.119551 kcal Electronic energy + Delta-G solvation = -19326.542763 eV Core-core repulsion = 16261.811698 eV Total energy + Delta-G solvation = -3064.731065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59292 -39.76636 -36.69401 -35.32701 -33.24668 -31.49718 -31.18826 -30.61062 -28.07985 -25.31002 -24.57061 -23.62366 -22.23874 -20.61498 -19.57593 -17.63546 -16.84018 -16.57181 -16.31118 -15.85653 -15.65260 -15.53767 -14.52963 -14.27169 -14.04816 -13.63953 -13.44661 -13.03389 -13.01674 -12.49562 -12.36469 -12.09515 -11.98214 -11.57673 -11.38793 -11.32880 -10.94971 -10.91334 -10.27296 -10.02287 -9.79625 -9.74907 -9.65768 -9.53961 -9.34598 -9.16398 -8.72623 -6.26337 -4.29031 0.94237 1.04742 2.76242 3.15411 3.27817 3.29192 3.37951 3.64435 4.22904 4.26845 4.45063 4.48497 4.79874 4.92250 4.95471 4.98081 5.04764 5.20001 5.44562 5.51495 5.55868 5.58565 5.62790 5.75831 5.87545 5.97111 6.11346 6.23450 6.24235 6.33090 6.36620 6.50817 6.56690 6.99354 7.32585 7.48522 7.77513 8.18484 8.55059 8.80471 9.30596 10.85798 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044054 B = 0.003837 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.426632 B = 7296.187922 C = 7470.949570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.191 3.809 3 H 0.046 0.954 4 C -0.526 4.526 5 H 0.087 0.913 6 C 0.080 3.920 7 N -0.888 5.888 8 Si 0.880 3.120 9 H -0.273 1.273 10 H -0.262 1.262 11 H -0.290 1.290 12 O -0.342 6.342 13 C 0.454 3.546 14 O -0.520 6.520 15 C -0.109 4.109 16 C -0.042 4.042 17 H 0.092 0.908 18 C -0.152 4.152 19 C -0.028 4.028 20 C -0.167 4.167 21 C 0.098 3.902 22 N -0.492 5.492 23 C 0.097 3.903 24 C -0.169 4.169 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.270 0.730 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.137 0.863 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 1.479 19.598 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.137 3.863 3 H 0.064 0.936 4 C -0.564 4.564 5 H 0.105 0.895 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.709 3.291 9 H -0.200 1.200 10 H -0.187 1.187 11 H -0.217 1.217 12 O -0.257 6.257 13 C 0.297 3.703 14 O -0.411 6.411 15 C -0.147 4.147 16 C -0.060 4.060 17 H 0.110 0.890 18 C -0.209 4.209 19 C -0.036 4.036 20 C -0.187 4.187 21 C -0.058 4.058 22 N -0.201 5.201 23 C -0.059 4.059 24 C -0.189 4.189 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.920 1.410 20.107 20.247 hybrid contribution -0.943 1.211 -1.136 1.909 sum 0.976 2.620 18.971 19.176 Atomic orbital electron populations 1.22521 0.98512 1.01847 0.99811 1.20923 0.90441 0.94433 0.80496 0.93595 1.20790 1.33421 1.14897 0.87293 0.89515 1.24737 0.95659 0.96734 0.95249 1.69837 1.44634 1.39993 0.98018 0.86959 0.80756 0.83596 0.77788 1.20003 1.18730 1.21655 1.86515 1.75578 1.42856 1.20770 1.23353 0.74738 0.86011 0.86175 1.90566 1.48879 1.16866 1.84774 1.21402 1.04171 0.98946 0.90197 1.20004 1.01433 0.95162 0.89450 0.88961 1.21993 0.97099 0.98488 1.03299 1.20322 0.93647 0.94320 0.95286 1.22085 0.97840 0.99027 0.99702 1.22763 0.98254 0.96480 0.88323 1.67666 1.04721 1.16121 1.31636 1.22740 0.93174 0.92788 0.97225 1.22116 1.01123 1.01934 0.93753 0.91797 0.94439 0.92549 0.92033 0.87982 0.87734 0.89703 0.92619 0.92651 0.84555 0.82770 0.82862 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 9.02 37.16 0.34 -3.47 16 2 C 0.19 4.72 2.15 -27.88 -0.06 4.66 16 3 H 0.05 1.20 6.21 -51.93 -0.32 0.87 16 4 C -0.53 -14.93 9.48 -34.44 -0.33 -15.25 16 5 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 6 C 0.08 2.26 5.45 -17.82 -0.10 2.16 16 7 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 8 Si 0.88 21.42 24.37 -169.99 -4.14 17.28 16 9 H -0.27 -6.39 6.88 56.52 0.39 -6.00 16 10 H -0.26 -6.28 6.52 56.52 0.37 -5.91 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 O -0.34 -7.54 9.86 -39.26 -0.39 -7.92 16 13 C 0.45 8.33 7.65 36.01 0.28 8.61 16 14 O -0.52 -10.56 13.19 -18.75 -0.25 -10.80 16 15 C -0.11 -1.40 5.03 -27.88 -0.14 -1.54 16 16 C -0.04 -0.48 2.24 -91.77 -0.21 -0.68 16 17 H 0.09 1.09 7.76 -51.93 -0.40 0.69 16 18 C -0.15 -1.79 8.76 37.16 0.33 -1.47 16 19 C -0.03 -0.28 4.79 -104.32 -0.50 -0.78 16 20 C -0.17 -1.58 8.89 -39.44 -0.35 -1.93 16 21 C 0.10 0.94 11.18 -17.55 -0.20 0.75 16 22 N -0.49 -5.42 10.36 -13.25 -0.14 -5.56 16 23 C 0.10 0.92 11.18 -17.55 -0.20 0.73 16 24 C -0.17 -1.59 9.76 -39.44 -0.39 -1.97 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.29 3.28 -51.93 -0.17 1.12 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.19 7.65 -51.93 -0.40 0.79 16 31 H 0.08 1.24 5.96 -51.93 -0.31 0.93 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.58 7.50 -51.93 -0.39 0.19 16 34 H 0.14 1.09 7.35 -52.49 -0.39 0.70 16 35 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.15 1.05 8.06 -52.48 -0.42 0.62 16 37 H 0.13 1.02 8.01 -52.49 -0.42 0.60 16 LS Contribution 306.60 15.07 4.62 4.62 Total: -1.00 -32.04 306.60 -5.98 -38.02 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.94 Total: 0.27 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.52 Total: -10.18 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.64 Total: -31.28 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.63 Total: -18.73 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.04 -5.98 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126012621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.098 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds