Wall clock time and date at job start Mon Mar 30 2020 06:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 O 1.45195 * 109.47245 * 120.00082 * 2 1 3 13 13 C 1.34231 * 117.00311 * 270.00407 * 12 2 1 14 14 O 1.20821 * 119.99670 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00187 * 179.97438 * 13 12 2 16 16 C 1.52995 * 109.47270 * 179.97438 * 15 13 12 17 17 H 1.08997 * 109.47193 * 54.99567 * 16 15 13 18 18 C 1.53005 * 109.46994 * 295.00116 * 16 15 13 19 19 C 1.50698 * 109.47263 * 175.00301 * 16 15 13 20 20 C 1.38642 * 120.79083 * 59.71676 * 19 16 15 21 21 C 1.38210 * 119.15960 * 179.75949 * 20 19 16 22 22 N 1.31866 * 120.76493 * 0.53093 * 21 20 19 23 23 C 1.31865 * 121.72417 * 359.73879 * 22 21 20 24 24 C 1.38199 * 120.76850 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 27 27 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 28 28 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 29 29 H 1.09005 * 109.46766 * 299.99754 * 15 13 12 30 30 H 1.09004 * 109.47002 * 59.99696 * 15 13 12 31 31 H 1.09000 * 109.47202 * 59.99802 * 18 16 15 32 32 H 1.08994 * 109.46978 * 179.97438 * 18 16 15 33 33 H 1.08999 * 109.46808 * 300.00288 * 18 16 15 34 34 H 1.07998 * 120.42217 * 0.02562 * 20 19 16 35 35 H 1.08000 * 119.61601 * 180.29848 * 21 20 19 36 36 H 1.08007 * 119.61756 * 180.02562 * 23 22 21 37 37 H 1.07997 * 120.42494 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 8 2.0141 -0.6845 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7183 -0.5773 3.5495 16 6 2.8636 0.4888 4.6371 17 1 1.9162 1.0136 4.7603 18 6 3.9502 1.4866 4.2313 19 6 3.2463 -0.1692 5.9377 20 6 4.4146 -0.9082 6.0424 21 6 4.7354 -1.4931 7.2528 22 7 3.9399 -1.3632 8.2965 23 6 2.8185 -0.6724 8.2320 24 6 2.4354 -0.0547 7.0566 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 1.9111 -0.5221 -4.4375 29 1 2.0087 -1.3371 3.8774 30 1 3.6872 -1.0410 3.3639 31 1 3.6735 1.9626 3.2906 32 1 4.0534 2.2464 5.0059 33 1 4.8976 0.9618 4.1080 34 1 5.0681 -1.0218 5.1900 35 1 5.6461 -2.0663 7.3439 36 1 2.1926 -0.5878 9.1081 37 1 1.5160 0.5100 7.0100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126012621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:17 Heat of formation + Delta-G solvation = -80.721287 kcal Electronic energy + Delta-G solvation = -19327.392758 eV Core-core repulsion = 16261.811698 eV Total energy + Delta-G solvation = -3065.581060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.66102 -40.97620 -38.12093 -36.52419 -35.29237 -32.80005 -32.16812 -31.84249 -29.17763 -27.35105 -25.48131 -24.36696 -23.75210 -21.92081 -20.92143 -19.19409 -18.59024 -17.82982 -17.39255 -17.17565 -16.90759 -16.38425 -16.19154 -15.30085 -15.04478 -14.84684 -14.59918 -14.41520 -14.35715 -14.17847 -13.79356 -13.63364 -13.24305 -12.85793 -12.74421 -12.54027 -12.35239 -12.20565 -11.82640 -11.74071 -11.62411 -11.29291 -11.14776 -10.83598 -10.50192 -10.37521 -10.02957 -8.45310 -6.54306 0.25897 0.29816 1.23211 1.30280 1.30914 1.40309 1.94935 2.19033 2.87589 2.91077 3.48719 3.63022 3.66220 3.86414 4.03375 4.13466 4.23948 4.25512 4.27761 4.38701 4.42321 4.54298 4.61625 4.66227 4.74425 4.78930 4.89094 4.95663 5.05931 5.12736 5.19879 5.32539 5.34207 5.48867 5.71028 5.82841 6.16223 6.50105 6.90973 7.07903 7.11473 8.70737 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044054 B = 0.003837 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.426632 B = 7296.187922 C = 7470.949570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.193 3.807 3 H 0.032 0.968 4 C -0.541 4.541 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.931 5.931 8 Si 0.942 3.058 9 H -0.252 1.252 10 H -0.256 1.256 11 H -0.284 1.284 12 O -0.357 6.357 13 C 0.449 3.551 14 O -0.539 6.539 15 C -0.100 4.100 16 C -0.033 4.033 17 H 0.088 0.912 18 C -0.150 4.150 19 C -0.035 4.035 20 C -0.169 4.169 21 C 0.090 3.910 22 N -0.516 5.516 23 C 0.090 3.910 24 C -0.171 4.171 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.275 0.725 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.150 0.850 35 H 0.175 0.825 36 H 0.176 0.824 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 2.150 21.304 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.139 3.861 3 H 0.050 0.950 4 C -0.579 4.579 5 H 0.064 0.936 6 C -0.170 4.170 7 N -0.569 5.569 8 Si 0.767 3.233 9 H -0.177 1.177 10 H -0.181 1.181 11 H -0.211 1.211 12 O -0.274 6.274 13 C 0.294 3.706 14 O -0.430 6.430 15 C -0.137 4.137 16 C -0.051 4.051 17 H 0.106 0.894 18 C -0.207 4.207 19 C -0.043 4.043 20 C -0.188 4.188 21 C -0.066 4.066 22 N -0.226 5.226 23 C -0.066 4.066 24 C -0.190 4.190 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.192 0.808 36 H 0.193 0.807 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.064 2.074 21.839 21.963 hybrid contribution -0.572 0.948 -1.589 1.937 sum 0.492 3.022 20.250 20.480 Atomic orbital electron populations 1.22409 0.96365 1.02572 1.00759 1.20596 0.91982 0.93056 0.80486 0.94983 1.20985 1.33276 1.14033 0.89563 0.93556 1.25580 0.96926 0.99872 0.94653 1.69961 1.46174 1.41973 0.98795 0.85960 0.79814 0.79548 0.77996 1.17697 1.18062 1.21065 1.86509 1.76254 1.43451 1.21148 1.24410 0.73863 0.85894 0.86411 1.90559 1.49632 1.17850 1.85003 1.21553 1.05218 0.99516 0.87437 1.19881 1.01098 0.94566 0.89571 0.89387 1.21949 0.97823 0.98940 1.02015 1.20215 0.94366 0.94989 0.94769 1.22255 0.97768 0.98624 1.00201 1.23132 0.98831 0.96555 0.88089 1.67698 1.05539 1.16903 1.32449 1.23140 0.93064 0.92284 0.98118 1.22320 1.01561 1.01748 0.93412 0.91257 0.92223 0.92724 0.91542 0.85971 0.85953 0.92731 0.91615 0.91473 0.83220 0.80813 0.80686 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.07 9.02 71.99 0.65 -6.42 16 2 C 0.19 9.54 2.15 29.85 0.06 9.61 16 3 H 0.03 1.67 6.21 -2.39 -0.01 1.66 16 4 C -0.54 -31.42 9.48 25.60 0.24 -31.18 16 5 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 6 C 0.03 1.69 5.45 84.65 0.46 2.15 16 7 N -0.93 -56.61 13.96 21.45 0.30 -56.31 16 8 Si 0.94 43.66 24.37 68.60 1.67 45.33 16 9 H -0.25 -10.77 6.88 99.48 0.68 -10.09 16 10 H -0.26 -11.55 6.52 99.48 0.65 -10.90 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 O -0.36 -15.70 9.86 -51.42 -0.51 -16.21 16 13 C 0.45 16.07 7.65 71.24 0.54 16.62 16 14 O -0.54 -21.52 13.19 21.98 0.29 -21.23 16 15 C -0.10 -2.36 5.03 29.85 0.15 -2.21 16 16 C -0.03 -0.68 2.24 -11.54 -0.03 -0.70 16 17 H 0.09 1.92 7.76 -2.39 -0.02 1.90 16 18 C -0.15 -3.34 8.76 71.98 0.63 -2.70 16 19 C -0.04 -0.63 4.79 -19.67 -0.09 -0.73 16 20 C -0.17 -2.79 8.89 22.36 0.20 -2.59 16 21 C 0.09 1.54 11.18 84.68 0.95 2.48 16 22 N -0.52 -10.35 10.36 -195.84 -2.03 -12.38 16 23 C 0.09 1.51 11.18 84.68 0.95 2.45 16 24 C -0.17 -2.78 9.76 22.36 0.22 -2.56 16 25 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.05 2.36 3.28 -2.39 -0.01 2.35 16 28 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.12 2.49 7.65 -2.39 -0.02 2.47 16 31 H 0.05 1.56 5.96 -2.39 -0.01 1.55 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.30 7.50 -2.39 -0.02 1.28 16 34 H 0.15 1.99 7.35 -2.91 -0.02 1.96 16 35 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.15 1.88 8.01 -2.91 -0.02 1.85 16 Total: -1.00 -69.87 306.60 5.64 -64.23 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.98 Total: 12.36 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 4.93 Total: -15.78 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -1.73 Total: -68.69 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.22 Total: -37.44 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.67 Total: 45.33 kcal Total: -69.87 5.64 -64.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126012621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.493 kcal (2) G-P(sol) polarization free energy of solvation -69.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds