Wall clock time and date at job start Mon Mar 30 2020 07:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50698 * 119.99875 * 2 1 4 4 C 1.50696 * 109.47221 * 294.99633 * 3 2 1 5 5 C 1.38274 * 119.94301 * 90.00518 * 4 3 2 6 6 C 1.38141 * 120.05552 * 180.27916 * 5 4 3 7 7 C 1.38738 * 119.94395 * 359.44290 * 6 5 4 8 8 O 1.35897 * 120.05494 * 180.25974 * 7 6 5 9 9 C 1.42901 * 117.00083 * 0.31613 * 8 7 6 10 10 C 1.53000 * 109.47055 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47300 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99670 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00412 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99704 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00408 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46643 * 90.00042 * 15 13 11 17 17 H 1.48502 * 109.47199 * 210.00191 * 15 13 11 18 18 H 1.48499 * 109.47035 * 330.00425 * 15 13 11 19 19 C 1.38730 * 119.88604 * 0.57278 * 7 6 5 20 20 C 1.38149 * 119.94512 * 359.70901 * 19 7 6 21 21 N 1.27950 * 119.99941 * 180.02562 * 2 1 3 22 22 O 1.41597 * 120.00227 * 180.02562 * 21 2 1 23 23 H 1.09006 * 109.47018 * 89.99773 * 1 2 3 24 24 H 1.08996 * 109.47457 * 209.99598 * 1 2 3 25 25 H 1.09002 * 109.47341 * 330.00477 * 1 2 3 26 26 H 1.08996 * 109.46877 * 175.00038 * 3 2 1 27 27 H 1.09002 * 109.47105 * 54.99898 * 3 2 1 28 28 H 1.08002 * 119.96836 * 359.97438 * 5 4 3 29 29 H 1.07998 * 120.02987 * 179.70379 * 6 5 4 30 30 H 1.09001 * 109.46722 * 299.99905 * 9 8 7 31 31 H 1.08994 * 109.47228 * 60.00588 * 9 8 7 32 32 H 1.08999 * 109.47401 * 300.00079 * 10 9 8 33 33 H 1.09000 * 109.47100 * 59.99678 * 10 9 8 34 34 H 0.97003 * 120.00286 * 179.97438 * 14 13 11 35 35 H 1.07997 * 120.02650 * 179.67529 * 19 7 6 36 36 H 1.07997 * 119.96847 * 179.97438 * 20 19 7 37 37 H 0.96700 * 114.00435 * 179.97438 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9917 2.0403 -1.2877 5 6 0.9282 2.9201 -1.3711 6 6 0.6763 3.5909 -2.5521 7 6 1.4982 3.3901 -3.6516 8 8 1.2556 4.0528 -4.8129 9 6 0.1408 4.9468 -4.8290 10 6 0.0269 5.5951 -6.2102 11 6 -1.1491 6.5373 -6.2274 12 1 -1.7545 6.6616 -5.3416 13 6 -1.4516 7.2414 -7.3735 14 7 -0.7142 7.0904 -8.4519 15 14 -2.9098 8.4088 -7.3951 16 1 -2.4657 9.7631 -6.9780 17 1 -3.4721 8.4732 -8.7680 18 1 -3.9506 7.9182 -6.4563 19 6 2.5644 2.5066 -3.5654 20 6 2.8087 1.8338 -2.3838 21 7 2.1468 -1.1081 -0.0005 22 8 3.5627 -1.1082 0.0001 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8900 0.5138 26 1 3.3287 1.1079 0.0896 27 1 1.9317 1.9145 0.8418 28 1 0.2911 3.0791 -0.5137 29 1 -0.1574 4.2743 -2.6183 30 1 -0.7724 4.3926 -4.6117 31 1 0.2846 5.7205 -4.0749 32 1 0.9400 6.1491 -6.4280 33 1 -0.1170 4.8211 -6.9641 34 1 -0.9272 7.5855 -9.2584 35 1 3.2025 2.3446 -4.4215 36 1 3.6383 1.1456 -2.3165 37 1 3.9561 -1.9915 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130825552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:05 Heat of formation + Delta-G solvation = -26.214955 kcal Electronic energy + Delta-G solvation = -18601.468792 eV Core-core repulsion = 15538.251304 eV Total energy + Delta-G solvation = -3063.217488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.91314 -38.22917 -36.96286 -34.65818 -33.39244 -31.37664 -30.86307 -29.96406 -28.50162 -26.47280 -24.95162 -22.81563 -21.50314 -20.54320 -19.71017 -17.93002 -17.12361 -16.18362 -16.02951 -15.60777 -15.35142 -15.31835 -14.55139 -14.47777 -13.92263 -13.65141 -13.33154 -12.95956 -12.91038 -12.71205 -12.56079 -12.33550 -11.94542 -11.63366 -11.38185 -11.26826 -10.90959 -10.72761 -10.46574 -10.16440 -9.79506 -9.73263 -9.67859 -9.32105 -8.86759 -8.46759 -7.79273 -6.12089 -4.16994 1.48292 1.49333 1.86778 2.89266 3.26089 3.32072 3.34761 3.82058 3.86785 4.39584 4.44448 4.77899 4.84748 5.03685 5.11755 5.17859 5.24363 5.29296 5.38641 5.47817 5.61692 5.68112 5.82104 5.96181 6.00669 6.03524 6.16033 6.38954 6.52930 6.55919 6.68128 6.69377 6.95285 7.48316 7.50583 7.61822 7.78995 8.03436 8.21669 8.88623 9.47498 10.99511 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043087 B = 0.003106 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.690451 B = 9012.588647 C = 9397.959175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.146 3.854 3 C -0.071 4.071 4 C -0.136 4.136 5 C -0.071 4.071 6 C -0.211 4.211 7 C 0.147 3.853 8 O -0.315 6.315 9 C 0.065 3.935 10 C 0.025 3.975 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.889 5.889 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.160 4.160 20 C -0.072 4.072 21 N -0.346 5.346 22 O -0.417 6.417 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.264 0.736 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.570 -13.171 17.494 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.047 4.047 3 C -0.110 4.110 4 C -0.137 4.137 5 C -0.089 4.089 6 C -0.230 4.230 7 C 0.100 3.900 8 O -0.228 6.228 9 C -0.009 4.009 10 C -0.012 4.012 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.179 4.179 20 C -0.090 4.090 21 N -0.089 5.089 22 O -0.323 6.323 23 H 0.106 0.894 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.140 0.860 29 H 0.150 0.850 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.550 -13.458 17.113 22.241 hybrid contribution -0.382 0.961 -0.032 1.035 sum 4.168 -12.496 17.081 21.570 Atomic orbital electron populations 1.20708 0.87091 1.03795 1.04216 1.25127 0.96918 0.91353 0.91254 1.20021 1.01379 0.93238 0.96345 1.19274 0.98461 1.00944 0.95024 1.20761 0.96099 0.95040 0.97027 1.21362 1.02673 1.05174 0.93748 1.19255 0.93379 0.91348 0.86030 1.86183 1.50361 1.55372 1.30933 1.23342 0.84880 0.89728 1.02966 1.19125 0.97966 0.95484 0.88635 1.20967 1.12683 1.24731 0.98141 0.92353 1.24993 0.96864 0.96932 0.95400 1.69976 1.38911 1.41694 1.02176 0.86484 0.82377 0.81076 0.77430 1.20482 1.21032 1.19740 1.20443 0.98889 0.99507 0.99080 1.20755 0.98532 0.97978 0.91760 1.76063 0.90978 1.25550 1.16335 1.88431 1.13153 1.34788 1.95903 0.89361 0.90417 0.89682 0.89211 0.89269 0.86034 0.85039 0.93081 0.93083 0.95406 0.95396 0.92678 0.85363 0.86046 0.75325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.89 36.01 0.36 -0.41 16 2 C 0.15 1.49 6.55 -78.94 -0.52 0.97 16 3 C -0.07 -0.71 5.53 -29.04 -0.16 -0.87 16 4 C -0.14 -1.63 4.96 -104.60 -0.52 -2.15 16 5 C -0.07 -0.87 9.54 -39.60 -0.38 -1.24 16 6 C -0.21 -3.16 9.04 -39.43 -0.36 -3.52 16 7 C 0.15 2.54 6.69 -39.21 -0.26 2.28 16 8 O -0.32 -6.48 10.14 -19.42 -0.20 -6.68 16 9 C 0.06 1.38 4.68 37.16 0.17 1.55 16 10 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 11 C -0.53 -14.60 9.11 -34.44 -0.31 -14.92 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 15 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.16 -2.45 9.99 -39.43 -0.39 -2.85 16 20 C -0.07 -0.95 9.69 -39.61 -0.38 -1.34 16 21 N -0.35 -3.90 12.04 35.58 0.43 -3.47 16 22 O -0.42 -4.23 13.42 -11.47 -0.15 -4.39 16 23 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 26 H 0.09 0.98 6.71 -51.93 -0.35 0.63 16 27 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.13 1.92 6.30 -52.49 -0.33 1.59 16 30 H 0.05 1.02 7.65 -51.93 -0.40 0.63 16 31 H 0.05 1.03 7.68 -51.93 -0.40 0.63 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.40 2.25 9.28 45.56 0.42 2.67 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -32.11 322.82 -6.74 -38.85 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.39 Total: 0.79 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -3.00 Total: -20.39 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 1.16 Total: -29.15 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.35 Total: -11.06 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.11 -6.74 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130825552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.636 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds