Wall clock time and date at job start Mon Mar 30 2020 07:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50698 * 119.99875 * 2 1 4 4 C 1.50696 * 109.47221 * 294.99633 * 3 2 1 5 5 C 1.38274 * 119.94301 * 90.00518 * 4 3 2 6 6 C 1.38141 * 120.05552 * 180.27916 * 5 4 3 7 7 C 1.38738 * 119.94395 * 359.44290 * 6 5 4 8 8 O 1.35897 * 120.05494 * 180.25974 * 7 6 5 9 9 C 1.42901 * 117.00083 * 0.31613 * 8 7 6 10 10 C 1.53000 * 109.47055 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47300 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99670 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00412 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99704 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00408 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46643 * 90.00042 * 15 13 11 17 17 H 1.48502 * 109.47199 * 210.00191 * 15 13 11 18 18 H 1.48499 * 109.47035 * 330.00425 * 15 13 11 19 19 C 1.38730 * 119.88604 * 0.57278 * 7 6 5 20 20 C 1.38149 * 119.94512 * 359.70901 * 19 7 6 21 21 N 1.27950 * 119.99941 * 180.02562 * 2 1 3 22 22 O 1.41597 * 120.00227 * 180.02562 * 21 2 1 23 23 H 1.09006 * 109.47018 * 89.99773 * 1 2 3 24 24 H 1.08996 * 109.47457 * 209.99598 * 1 2 3 25 25 H 1.09002 * 109.47341 * 330.00477 * 1 2 3 26 26 H 1.08996 * 109.46877 * 175.00038 * 3 2 1 27 27 H 1.09002 * 109.47105 * 54.99898 * 3 2 1 28 28 H 1.08002 * 119.96836 * 359.97438 * 5 4 3 29 29 H 1.07998 * 120.02987 * 179.70379 * 6 5 4 30 30 H 1.09001 * 109.46722 * 299.99905 * 9 8 7 31 31 H 1.08994 * 109.47228 * 60.00588 * 9 8 7 32 32 H 1.08999 * 109.47401 * 300.00079 * 10 9 8 33 33 H 1.09000 * 109.47100 * 59.99678 * 10 9 8 34 34 H 0.97003 * 120.00286 * 179.97438 * 14 13 11 35 35 H 1.07997 * 120.02650 * 179.67529 * 19 7 6 36 36 H 1.07997 * 119.96847 * 179.97438 * 20 19 7 37 37 H 0.96700 * 114.00435 * 179.97438 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9917 2.0403 -1.2877 5 6 0.9282 2.9201 -1.3711 6 6 0.6763 3.5909 -2.5521 7 6 1.4982 3.3901 -3.6516 8 8 1.2556 4.0528 -4.8129 9 6 0.1408 4.9468 -4.8290 10 6 0.0269 5.5951 -6.2102 11 6 -1.1491 6.5373 -6.2274 12 1 -1.7545 6.6616 -5.3416 13 6 -1.4516 7.2414 -7.3735 14 7 -0.7142 7.0904 -8.4519 15 14 -2.9098 8.4088 -7.3951 16 1 -2.4657 9.7631 -6.9780 17 1 -3.4721 8.4732 -8.7680 18 1 -3.9506 7.9182 -6.4563 19 6 2.5644 2.5066 -3.5654 20 6 2.8087 1.8338 -2.3838 21 7 2.1468 -1.1081 -0.0005 22 8 3.5627 -1.1082 0.0001 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8900 0.5138 26 1 3.3287 1.1079 0.0896 27 1 1.9317 1.9145 0.8418 28 1 0.2911 3.0791 -0.5137 29 1 -0.1574 4.2743 -2.6183 30 1 -0.7724 4.3926 -4.6117 31 1 0.2846 5.7205 -4.0749 32 1 0.9400 6.1491 -6.4280 33 1 -0.1170 4.8211 -6.9641 34 1 -0.9272 7.5855 -9.2584 35 1 3.2025 2.3446 -4.4215 36 1 3.6383 1.1456 -2.3165 37 1 3.9561 -1.9915 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130825552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:04 Heat of formation + Delta-G solvation = -46.909792 kcal Electronic energy + Delta-G solvation = -18602.366188 eV Core-core repulsion = 15538.251304 eV Total energy + Delta-G solvation = -3064.114884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.13036 -39.28756 -37.99550 -35.62471 -35.27777 -32.75425 -31.93801 -31.59858 -29.14941 -27.67371 -26.67005 -24.22468 -22.81804 -22.04425 -20.45848 -19.38451 -18.24094 -17.87147 -17.06926 -16.93596 -16.57473 -16.49808 -16.31085 -15.45881 -14.87193 -14.63012 -14.41310 -14.32697 -14.28873 -14.03349 -13.53833 -13.22288 -13.13874 -13.03410 -12.70956 -12.65432 -12.53709 -12.40829 -11.84676 -11.62698 -11.55983 -11.36865 -10.85915 -10.61686 -10.48863 -9.95473 -8.99855 -8.26496 -6.40392 0.38411 0.41230 1.08476 1.41755 1.44033 1.55190 2.23643 2.27844 2.52424 2.77573 3.08194 3.71243 3.84951 3.90069 4.00469 4.15467 4.28334 4.30044 4.42698 4.51575 4.62463 4.70752 4.74202 4.77456 4.82229 4.98242 5.10041 5.26813 5.34301 5.35288 5.46767 5.47051 5.62476 5.68629 5.87305 5.97860 6.07518 6.56604 6.74880 6.86631 7.30079 8.86786 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043087 B = 0.003106 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.690451 B = 9012.588647 C = 9397.959175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.143 3.857 3 C -0.067 4.067 4 C -0.121 4.121 5 C -0.061 4.061 6 C -0.215 4.215 7 C 0.108 3.892 8 O -0.344 6.344 9 C 0.084 3.916 10 C 0.027 3.973 11 C -0.545 4.545 12 H 0.073 0.927 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.977 3.023 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.257 1.257 19 C -0.171 4.171 20 C -0.075 4.075 21 N -0.368 5.368 22 O -0.428 6.428 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.162 0.838 29 H 0.134 0.866 30 H 0.063 0.937 31 H 0.062 0.938 32 H -0.004 1.004 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.162 -13.182 20.271 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.049 4.049 3 C -0.106 4.106 4 C -0.122 4.122 5 C -0.079 4.079 6 C -0.234 4.234 7 C 0.062 3.938 8 O -0.258 6.258 9 C 0.010 3.990 10 C -0.010 4.010 11 C -0.583 4.583 12 H 0.091 0.909 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.800 3.200 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.181 1.181 19 C -0.190 4.190 20 C -0.094 4.094 21 N -0.111 5.111 22 O -0.337 6.337 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.128 0.872 26 H 0.100 0.900 27 H 0.135 0.865 28 H 0.179 0.821 29 H 0.152 0.848 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.159 -13.501 19.917 24.268 hybrid contribution 0.181 0.830 -0.810 1.174 sum 3.341 -12.671 19.107 23.169 Atomic orbital electron populations 1.20843 0.85378 1.05466 1.04313 1.25515 0.98025 0.90913 0.90488 1.20045 1.01147 0.93465 0.95952 1.19554 0.97417 0.99950 0.95318 1.21131 0.96113 0.93549 0.97066 1.21511 1.02318 1.05566 0.93999 1.19559 0.95409 0.92925 0.85892 1.86090 1.50240 1.56154 1.33328 1.22878 0.85983 0.90306 0.99826 1.18971 0.96444 0.94572 0.91015 1.21411 1.13129 1.24908 0.98840 0.90882 1.26062 1.00075 0.98816 0.94846 1.70127 1.41043 1.43014 1.03026 0.85276 0.78478 0.78544 0.77719 1.19562 1.20792 1.18091 1.20562 0.98682 0.99750 1.00019 1.20953 0.99206 0.97776 0.91419 1.76039 0.91510 1.26391 1.17210 1.88397 1.12817 1.36521 1.95935 0.89867 0.89704 0.87229 0.90024 0.86479 0.82074 0.84772 0.91896 0.91957 0.98508 0.98475 0.92465 0.85720 0.84862 0.73510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.89 71.24 0.70 -0.52 16 2 C 0.14 2.50 6.55 46.54 0.30 2.80 16 3 C -0.07 -1.12 5.53 29.10 0.16 -0.96 16 4 C -0.12 -2.57 4.96 -19.85 -0.10 -2.67 16 5 C -0.06 -1.27 9.54 22.26 0.21 -1.06 16 6 C -0.22 -6.11 9.04 22.37 0.20 -5.90 16 7 C 0.11 3.74 6.69 22.51 0.15 3.89 16 8 O -0.34 -14.65 10.14 -92.39 -0.94 -15.59 16 9 C 0.08 3.65 4.68 71.98 0.34 3.98 16 10 C 0.03 1.49 5.34 29.85 0.16 1.65 16 11 C -0.55 -30.55 9.11 25.60 0.23 -30.31 16 12 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 13 C 0.00 0.02 5.46 84.65 0.46 0.49 16 14 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 15 Si 0.98 43.11 29.54 68.60 2.03 45.14 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 C -0.17 -5.28 9.99 22.37 0.22 -5.06 16 20 C -0.08 -1.90 9.69 22.25 0.22 -1.69 16 21 N -0.37 -7.58 12.04 -41.23 -0.50 -8.07 16 22 O -0.43 -8.01 13.42 -38.78 -0.52 -8.53 16 23 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.11 0.75 8.12 -2.39 -0.02 0.73 16 26 H 0.08 1.56 6.71 -2.39 -0.02 1.54 16 27 H 0.12 1.35 8.08 -2.39 -0.02 1.33 16 28 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 29 H 0.13 3.68 6.30 -2.91 -0.02 3.66 16 30 H 0.06 2.53 7.65 -2.39 -0.02 2.51 16 31 H 0.06 2.51 7.68 -2.39 -0.02 2.49 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.12 3.77 8.06 -2.91 -0.02 3.74 16 36 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.41 4.15 9.28 -74.06 -0.69 3.46 16 Total: -1.00 -71.06 322.82 4.01 -67.06 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.38 Total: 11.95 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: 3.27 Total: -35.37 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.21 Total: -64.66 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -1.46 Total: -24.12 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -71.06 4.01 -67.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130825552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.147 kcal (2) G-P(sol) polarization free energy of solvation -71.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds