Wall clock time and date at job start Mon Mar 30 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46020 * 2 1 4 4 C 1.53046 * 109.46046 * 119.95517 * 2 1 3 5 5 C 1.53191 * 109.31078 * 181.39175 * 4 2 1 6 6 N 1.47211 * 108.85143 * 305.34243 * 5 4 2 7 7 C 1.34780 * 120.81396 * 233.66422 * 6 5 4 8 8 O 1.21691 * 119.99678 * 174.64408 * 7 6 5 9 9 C 1.46370 * 119.99885 * 354.64830 * 7 6 5 10 10 H 1.08000 * 120.00413 * 342.58951 * 9 7 6 11 11 C 1.40058 * 119.99796 * 162.59246 * 9 7 6 12 12 N 1.30665 * 119.99757 * 170.37106 * 11 9 7 13 13 Si 1.86797 * 119.99859 * 350.37241 * 11 9 7 14 14 H 1.48501 * 109.47368 * 84.77722 * 13 11 9 15 15 H 1.48497 * 109.47139 * 204.77836 * 13 11 9 16 16 H 1.48501 * 109.47237 * 324.77580 * 13 11 9 17 17 C 1.46925 * 118.55240 * 53.52909 * 6 5 4 18 18 H 1.08999 * 109.58361 * 186.59743 * 17 6 5 19 19 C 1.50706 * 109.58581 * 66.31799 * 17 6 5 20 20 C 1.34509 * 125.78760 * 140.28766 * 19 17 6 21 21 C 1.41385 * 106.83839 * 179.77008 * 20 19 17 22 22 C 1.34509 * 106.84006 * 0.21943 * 21 20 19 23 23 O 1.34300 * 108.42330 * 0.02562 * 22 21 20 24 24 C 1.53037 * 109.46370 * 240.02308 * 2 1 3 25 25 H 1.09006 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47271 * 299.97628 * 1 2 3 27 27 H 1.08996 * 109.47200 * 59.97971 * 1 2 3 28 28 H 1.08999 * 109.49371 * 301.33592 * 4 2 1 29 29 H 1.08994 * 109.49825 * 61.43363 * 4 2 1 30 30 H 1.08994 * 109.59132 * 65.14969 * 5 4 2 31 31 H 1.09008 * 109.58427 * 185.43782 * 5 4 2 32 32 H 0.97002 * 119.99324 * 179.97438 * 12 11 9 33 33 H 1.08003 * 126.58368 * 0.02562 * 20 19 17 34 34 H 1.08001 * 126.57962 * 180.19144 * 21 20 19 35 35 H 1.08004 * 125.78825 * 180.02562 * 22 21 20 36 36 H 1.09008 * 109.49695 * 58.66158 * 24 2 1 37 37 H 1.09002 * 109.49787 * 298.56342 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7205 1.2503 5 6 3.5713 -0.6882 1.2645 6 7 4.0707 -1.2499 -0.0013 7 6 4.9644 -2.2587 -0.0040 8 8 5.2937 -2.7771 -1.0546 9 6 5.5389 -2.7309 1.2567 10 1 5.4783 -2.1152 2.1420 11 6 6.1672 -3.9813 1.3151 12 7 6.8420 -4.3242 2.3802 13 14 6.0405 -5.1586 -0.1296 14 1 7.0898 -4.8315 -1.1282 15 1 6.2296 -6.5516 0.3490 16 1 4.7014 -5.0286 -0.7581 17 6 3.5714 -0.6887 -1.2641 18 1 3.9417 -1.2827 -2.0996 19 6 4.0455 0.7347 -1.4068 20 6 4.4701 1.3119 -2.5452 21 6 4.8112 2.6462 -2.2253 22 6 4.5792 2.8030 -0.9097 23 8 4.1189 1.6409 -0.4184 24 6 2.0399 -0.7210 -1.2499 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5134 0.8901 27 1 -0.3633 0.5141 -0.8898 28 1 1.6572 -0.2203 2.1399 29 1 1.6978 -1.7554 1.2387 30 1 3.9142 0.3413 1.3673 31 1 3.9416 -1.2820 2.1003 32 1 7.2769 -5.1903 2.4207 33 1 4.5339 0.8467 -3.5178 34 1 5.1864 3.3955 -2.9066 35 1 4.7365 3.7097 -0.3443 36 1 1.6572 -0.2211 -2.1398 37 1 1.6979 -1.7559 -1.2379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153927579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:00 Heat of formation + Delta-G solvation = -39.397596 kcal Electronic energy + Delta-G solvation = -20771.326656 eV Core-core repulsion = 17707.537525 eV Total energy + Delta-G solvation = -3063.789131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.29891 -39.00249 -36.61285 -33.19362 -32.90472 -32.75670 -31.56274 -28.50622 -27.66930 -26.39370 -23.14615 -22.71601 -21.57602 -20.48922 -20.10236 -18.89648 -16.85356 -16.59272 -15.95871 -15.83802 -14.99660 -14.45750 -14.22279 -14.04748 -13.85368 -13.10258 -12.97912 -12.62726 -12.51094 -12.45153 -12.31204 -12.09458 -11.89024 -11.60628 -11.46976 -11.06605 -10.82504 -10.64671 -10.41988 -10.13208 -10.08517 -9.60234 -9.44196 -9.02352 -8.18704 -7.93523 -7.64045 -6.63413 -4.84127 2.05924 2.89719 3.30252 3.43744 3.48315 3.68954 4.15282 4.17967 4.52186 4.87726 5.02090 5.05604 5.15131 5.29959 5.33632 5.48799 5.52008 5.71871 5.81507 5.86723 5.92109 5.97211 6.04575 6.06107 6.16539 6.24987 6.31923 6.33735 6.39603 6.46019 6.54737 6.76916 6.82532 7.05726 7.43038 7.62206 7.86348 8.30639 8.69205 9.10451 9.99530 10.37613 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.007482 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.171049 B = 3741.395712 C = 4259.076635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.118 3.882 6 N -0.622 5.622 7 C 0.557 3.443 8 O -0.616 6.616 9 C -0.530 4.530 10 H 0.091 0.909 11 C 0.103 3.897 12 N -0.827 5.827 13 Si 0.963 3.037 14 H -0.276 1.276 15 H -0.319 1.319 16 H -0.267 1.267 17 C 0.220 3.780 18 H 0.121 0.879 19 C 0.009 3.991 20 C -0.222 4.222 21 C -0.213 4.213 22 C -0.059 4.059 23 O -0.163 6.163 24 C -0.119 4.119 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.282 0.718 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.195 0.805 36 H 0.067 0.933 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 11.160 -4.080 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.006 4.006 6 N -0.355 5.355 7 C 0.367 3.633 8 O -0.508 6.508 9 C -0.565 4.565 10 H 0.109 0.891 11 C -0.115 4.115 12 N -0.457 5.457 13 Si 0.795 3.205 14 H -0.202 1.202 15 H -0.250 1.250 16 H -0.192 1.192 17 C 0.115 3.885 18 H 0.138 0.862 19 C -0.043 4.043 20 C -0.242 4.242 21 C -0.232 4.232 22 C -0.127 4.127 23 O -0.058 6.058 24 C -0.157 4.157 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.212 0.788 36 H 0.086 0.914 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.644 10.736 -4.135 15.012 hybrid contribution 0.200 -0.132 -0.700 0.740 sum -9.444 10.603 -4.835 15.000 Atomic orbital electron populations 1.21811 0.95566 1.01576 1.01121 1.21138 0.94988 0.99834 0.95168 0.91009 1.21976 0.96805 1.00809 0.96967 1.21641 0.92280 0.98651 0.88015 1.47864 1.45911 1.38033 1.03684 1.18372 0.77225 0.77441 0.90284 1.90220 1.66472 1.59191 1.34956 1.20734 1.35772 1.04509 0.95518 0.89105 1.25737 0.90194 0.98552 0.97016 1.69558 1.25037 1.21989 1.29080 0.85305 0.81060 0.74337 0.79817 1.20231 1.25027 1.19200 1.19524 0.93111 0.84186 0.91711 0.86179 1.23309 1.02505 0.92357 0.86101 1.21527 1.08041 0.95209 0.99426 1.21713 1.07729 0.97649 0.96131 1.23964 1.04644 0.89320 0.94769 1.84140 1.65205 1.19045 1.37388 1.21998 0.94100 1.01560 0.98051 0.92781 0.92909 0.93131 0.91643 0.91587 0.92658 0.88394 0.90781 0.83868 0.84048 0.78779 0.91404 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 37.15 0.34 -1.29 16 2 C -0.09 -1.30 2.50 -90.58 -0.23 -1.52 16 3 H 0.07 1.05 6.41 -51.93 -0.33 0.71 16 4 C -0.13 -1.94 5.36 -26.61 -0.14 -2.08 16 5 C 0.12 2.20 5.85 -3.55 -0.02 2.18 16 6 N -0.62 -13.56 2.68 -167.95 -0.45 -14.01 16 7 C 0.56 14.87 7.22 -12.99 -0.09 14.78 16 8 O -0.62 -17.82 12.10 5.20 0.06 -17.76 16 9 C -0.53 -14.93 9.10 -35.63 -0.32 -15.25 16 10 H 0.09 2.56 6.43 -52.49 -0.34 2.22 16 11 C 0.10 2.94 5.52 -17.37 -0.10 2.84 16 12 N -0.83 -23.48 13.92 55.55 0.77 -22.70 16 13 Si 0.96 25.36 25.83 -169.99 -4.39 20.96 16 14 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 15 H -0.32 -7.93 7.11 56.52 0.40 -7.53 16 16 H -0.27 -7.27 6.81 56.52 0.38 -6.88 16 17 C 0.22 4.14 3.06 -68.75 -0.21 3.93 16 18 H 0.12 2.45 6.99 -51.93 -0.36 2.09 16 19 C 0.01 0.17 5.50 -35.62 -0.20 -0.03 16 20 C -0.22 -3.57 10.80 -39.70 -0.43 -4.00 16 21 C -0.21 -2.98 10.91 -39.70 -0.43 -3.42 16 22 C -0.06 -0.82 12.09 29.41 0.36 -0.46 16 23 O -0.16 -2.73 7.29 5.72 0.04 -2.68 16 24 C -0.12 -1.81 4.82 -26.61 -0.13 -1.94 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.01 6.30 -51.93 -0.33 0.68 16 31 H 0.10 1.98 5.64 -51.92 -0.29 1.69 16 32 H 0.28 7.37 8.29 -40.82 -0.34 7.03 16 33 H 0.14 2.08 8.06 -52.48 -0.42 1.66 16 34 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.20 1.88 8.06 -52.48 -0.42 1.45 16 36 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 295.99 15.07 4.46 4.46 Total: -1.00 -31.97 295.99 -6.14 -38.11 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.03 Total: -0.11 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.60 Total: -6.26 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.32 Total: -36.72 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.10 Total: -20.44 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.39 Total: 20.96 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.97 -6.14 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153927579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.286 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds