Wall clock time and date at job start Mon Mar 30 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46020 * 2 1 4 4 C 1.53046 * 109.46046 * 119.95517 * 2 1 3 5 5 C 1.53191 * 109.31078 * 181.39175 * 4 2 1 6 6 N 1.47211 * 108.85143 * 305.34243 * 5 4 2 7 7 C 1.34780 * 120.81396 * 233.66422 * 6 5 4 8 8 O 1.21691 * 119.99678 * 174.64408 * 7 6 5 9 9 C 1.46370 * 119.99885 * 354.64830 * 7 6 5 10 10 H 1.08000 * 120.00413 * 342.58951 * 9 7 6 11 11 C 1.40058 * 119.99796 * 162.59246 * 9 7 6 12 12 N 1.30665 * 119.99757 * 170.37106 * 11 9 7 13 13 Si 1.86797 * 119.99859 * 350.37241 * 11 9 7 14 14 H 1.48501 * 109.47368 * 84.77722 * 13 11 9 15 15 H 1.48497 * 109.47139 * 204.77836 * 13 11 9 16 16 H 1.48501 * 109.47237 * 324.77580 * 13 11 9 17 17 C 1.46925 * 118.55240 * 53.52909 * 6 5 4 18 18 H 1.08999 * 109.58361 * 186.59743 * 17 6 5 19 19 C 1.50706 * 109.58581 * 66.31799 * 17 6 5 20 20 C 1.34509 * 125.78760 * 140.28766 * 19 17 6 21 21 C 1.41385 * 106.83839 * 179.77008 * 20 19 17 22 22 C 1.34509 * 106.84006 * 0.21943 * 21 20 19 23 23 O 1.34300 * 108.42330 * 0.02562 * 22 21 20 24 24 C 1.53037 * 109.46370 * 240.02308 * 2 1 3 25 25 H 1.09006 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47271 * 299.97628 * 1 2 3 27 27 H 1.08996 * 109.47200 * 59.97971 * 1 2 3 28 28 H 1.08999 * 109.49371 * 301.33592 * 4 2 1 29 29 H 1.08994 * 109.49825 * 61.43363 * 4 2 1 30 30 H 1.08994 * 109.59132 * 65.14969 * 5 4 2 31 31 H 1.09008 * 109.58427 * 185.43782 * 5 4 2 32 32 H 0.97002 * 119.99324 * 179.97438 * 12 11 9 33 33 H 1.08003 * 126.58368 * 0.02562 * 20 19 17 34 34 H 1.08001 * 126.57962 * 180.19144 * 21 20 19 35 35 H 1.08004 * 125.78825 * 180.02562 * 22 21 20 36 36 H 1.09008 * 109.49695 * 58.66158 * 24 2 1 37 37 H 1.09002 * 109.49787 * 298.56342 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7205 1.2503 5 6 3.5713 -0.6882 1.2645 6 7 4.0707 -1.2499 -0.0013 7 6 4.9644 -2.2587 -0.0040 8 8 5.2937 -2.7771 -1.0546 9 6 5.5389 -2.7309 1.2567 10 1 5.4783 -2.1152 2.1420 11 6 6.1672 -3.9813 1.3151 12 7 6.8420 -4.3242 2.3802 13 14 6.0405 -5.1586 -0.1296 14 1 7.0898 -4.8315 -1.1282 15 1 6.2296 -6.5516 0.3490 16 1 4.7014 -5.0286 -0.7581 17 6 3.5714 -0.6887 -1.2641 18 1 3.9417 -1.2827 -2.0996 19 6 4.0455 0.7347 -1.4068 20 6 4.4701 1.3119 -2.5452 21 6 4.8112 2.6462 -2.2253 22 6 4.5792 2.8030 -0.9097 23 8 4.1189 1.6409 -0.4184 24 6 2.0399 -0.7210 -1.2499 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5134 0.8901 27 1 -0.3633 0.5141 -0.8898 28 1 1.6572 -0.2203 2.1399 29 1 1.6978 -1.7554 1.2387 30 1 3.9142 0.3413 1.3673 31 1 3.9416 -1.2820 2.1003 32 1 7.2769 -5.1903 2.4207 33 1 4.5339 0.8467 -3.5178 34 1 5.1864 3.3955 -2.9066 35 1 4.7365 3.7097 -0.3443 36 1 1.6572 -0.2211 -2.1398 37 1 1.6979 -1.7559 -1.2379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153927579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:00 Heat of formation + Delta-G solvation = -59.264677 kcal Electronic energy + Delta-G solvation = -20772.188157 eV Core-core repulsion = 17707.537525 eV Total energy + Delta-G solvation = -3064.650632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.50947 -40.64969 -38.36483 -35.06174 -34.63098 -34.08985 -32.91261 -29.86713 -29.14143 -28.13969 -24.52677 -24.14066 -22.80033 -21.95698 -21.48369 -20.32406 -18.78380 -17.99730 -17.86083 -17.14563 -16.75204 -15.97965 -15.68986 -15.46326 -15.16761 -14.77379 -14.42162 -14.26243 -14.03438 -13.90976 -13.69851 -13.64362 -13.23955 -13.08262 -12.82048 -12.67217 -12.55714 -12.23977 -11.93651 -11.65651 -11.35012 -11.26179 -11.14823 -10.77284 -10.07923 -9.41310 -9.33105 -8.81993 -7.03366 0.84913 1.29757 1.33521 1.54823 1.73501 1.98690 2.18208 2.31253 2.61879 3.25239 3.65363 3.86146 3.89738 3.99329 4.17126 4.20901 4.28827 4.44853 4.56577 4.71604 4.77628 4.80344 4.87701 4.93629 4.96491 5.00083 5.04358 5.13679 5.17587 5.22278 5.25526 5.40890 5.57869 5.64807 5.66603 5.90915 6.16009 6.32371 6.58865 7.07733 7.91724 8.23869 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.007482 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.171049 B = 3741.395712 C = 4259.076635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.120 4.120 5 C 0.115 3.885 6 N -0.621 5.621 7 C 0.553 3.447 8 O -0.646 6.646 9 C -0.549 4.549 10 H 0.082 0.918 11 C 0.072 3.928 12 N -0.848 5.848 13 Si 1.007 2.993 14 H -0.293 1.293 15 H -0.293 1.293 16 H -0.285 1.285 17 C 0.216 3.784 18 H 0.094 0.906 19 C -0.021 4.021 20 C -0.226 4.226 21 C -0.220 4.220 22 C -0.051 4.051 23 O -0.178 6.178 24 C -0.113 4.113 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.292 0.708 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.237 0.763 36 H 0.090 0.910 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.249 13.043 -4.385 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.007 4.007 6 N -0.353 5.353 7 C 0.361 3.639 8 O -0.540 6.540 9 C -0.585 4.585 10 H 0.100 0.900 11 C -0.144 4.144 12 N -0.478 5.478 13 Si 0.839 3.161 14 H -0.220 1.220 15 H -0.222 1.222 16 H -0.211 1.211 17 C 0.112 3.888 18 H 0.112 0.888 19 C -0.073 4.073 20 C -0.246 4.246 21 C -0.239 4.239 22 C -0.118 4.118 23 O -0.074 6.074 24 C -0.151 4.151 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.188 0.812 35 H 0.253 0.747 36 H 0.109 0.891 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.066 12.636 -4.417 17.368 hybrid contribution 0.661 -0.563 -0.623 1.069 sum -10.405 12.073 -5.040 16.716 Atomic orbital electron populations 1.21751 0.93041 1.02073 1.02548 1.21089 0.96930 0.99086 0.93361 0.91044 1.21938 0.93793 1.00941 0.99171 1.21755 0.94902 0.98159 0.85910 1.47789 1.44542 1.36802 1.06118 1.18286 0.77799 0.78507 0.89287 1.90187 1.67582 1.60610 1.35595 1.20922 1.36717 1.04828 0.96039 0.90042 1.26222 0.90306 0.99538 0.98361 1.69556 1.25598 1.22984 1.29692 0.84689 0.79228 0.74617 0.77580 1.22027 1.22178 1.21141 1.19607 0.95345 0.84838 0.89036 0.88797 1.22954 1.05138 0.92132 0.87031 1.21847 1.06928 0.96429 0.99387 1.22070 1.07746 0.97218 0.96900 1.24855 1.02419 0.89295 0.95276 1.84100 1.65808 1.19905 1.37540 1.21983 0.91412 1.01632 1.00050 0.92764 0.91422 0.91826 0.88868 0.92571 0.91918 0.90624 0.89713 0.83201 0.81180 0.74708 0.89114 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.19 71.98 0.66 -2.01 16 2 C -0.09 -2.22 2.50 -10.77 -0.03 -2.24 16 3 H 0.07 1.89 6.41 -2.38 -0.02 1.88 16 4 C -0.12 -3.50 5.36 30.67 0.16 -3.33 16 5 C 0.12 4.33 5.85 86.31 0.50 4.83 16 6 N -0.62 -27.60 2.68 -803.50 -2.15 -29.75 16 7 C 0.55 30.43 7.22 86.36 0.62 31.05 16 8 O -0.65 -38.45 12.10 -4.32 -0.05 -38.50 16 9 C -0.55 -31.85 9.10 24.83 0.23 -31.63 16 10 H 0.08 4.76 6.43 -2.91 -0.02 4.74 16 11 C 0.07 4.15 5.52 85.31 0.47 4.62 16 12 N -0.85 -48.54 13.92 21.84 0.30 -48.23 16 13 Si 1.01 53.04 25.83 68.60 1.77 54.81 16 14 H -0.29 -16.11 7.11 99.48 0.71 -15.40 16 15 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 16 H -0.28 -15.72 6.81 99.48 0.68 -15.04 16 17 C 0.22 8.18 3.06 44.23 0.14 8.32 16 18 H 0.09 3.99 6.99 -2.39 -0.02 3.97 16 19 C -0.02 -0.72 5.50 24.83 0.14 -0.59 16 20 C -0.23 -6.96 10.80 22.19 0.24 -6.72 16 21 C -0.22 -5.55 10.91 22.19 0.24 -5.30 16 22 C -0.05 -1.26 12.09 66.97 0.81 -0.45 16 23 O -0.18 -5.64 7.29 -2.45 -0.02 -5.66 16 24 C -0.11 -3.32 4.82 30.67 0.15 -3.17 16 25 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 2.26 6.30 -2.39 -0.02 2.24 16 31 H 0.08 3.16 5.64 -2.38 -0.01 3.15 16 32 H 0.29 15.24 8.29 -92.71 -0.77 14.48 16 33 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 34 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.24 3.49 8.06 -2.91 -0.02 3.46 16 36 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -70.10 295.99 5.22 -64.87 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.04 Total: 9.08 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 4.34 Total: -6.63 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -1.85 Total: -77.98 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.07 Total: -44.16 kcal Atomic # 14 Polarization: 53.04 SS G_CDS: 1.77 Total: 54.81 kcal Total: -70.10 5.22 -64.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153927579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.608 kcal (2) G-P(sol) polarization free energy of solvation -70.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds