Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.46737 * 2 1 4 4 C 1.53043 * 109.45898 * 240.04173 * 2 1 3 5 5 C 1.53191 * 109.31623 * 178.61467 * 4 2 1 6 6 N 1.46932 * 108.77241 * 54.63851 * 5 4 2 7 7 C 1.34777 * 120.62834 * 126.36895 * 6 5 4 8 8 O 1.21690 * 119.99359 * 174.75214 * 7 6 5 9 9 C 1.46374 * 120.00129 * 354.75460 * 7 6 5 10 10 H 1.07994 * 120.00208 * 5.72026 * 9 7 6 11 11 C 1.40049 * 119.99887 * 185.72324 * 9 7 6 12 12 N 1.30678 * 119.99928 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 119.99897 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46809 * 90.00460 * 13 11 9 15 15 H 1.48507 * 109.47177 * 209.99787 * 13 11 9 16 16 H 1.48494 * 109.47139 * 330.00113 * 13 11 9 17 17 C 1.46926 * 118.73787 * 306.39176 * 6 5 4 18 18 H 1.08995 * 109.70189 * 173.47077 * 17 6 5 19 19 C 1.50705 * 109.58658 * 293.82221 * 17 6 5 20 20 C 1.34508 * 125.78867 * 219.29328 * 19 17 6 21 21 C 1.41382 * 106.84056 * 179.97438 * 20 19 17 22 22 C 1.34512 * 106.84133 * 359.97438 * 21 20 19 23 23 O 1.34301 * 108.41932 * 0.02562 * 22 21 20 24 24 C 1.53045 * 109.45895 * 119.97965 * 2 1 3 25 25 H 1.09005 * 109.46719 * 300.02482 * 1 2 3 26 26 H 1.08994 * 109.47404 * 60.01938 * 1 2 3 27 27 H 1.08994 * 109.47856 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.49773 * 298.56962 * 4 2 1 29 29 H 1.09004 * 109.49547 * 58.63397 * 4 2 1 30 30 H 1.09000 * 109.58934 * 174.42312 * 5 4 2 31 31 H 1.09000 * 109.58476 * 294.85089 * 5 4 2 32 32 H 0.96993 * 120.00128 * 180.02562 * 12 11 9 33 33 H 1.07998 * 126.58451 * 359.69855 * 20 19 17 34 34 H 1.08004 * 126.58111 * 180.02562 * 21 20 19 35 35 H 1.07998 * 125.78902 * 179.97438 * 22 21 20 36 36 H 1.08996 * 109.50008 * 61.43155 * 24 2 1 37 37 H 1.08996 * 109.49672 * 301.32577 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5713 -0.6885 -1.2645 6 7 4.0678 -1.2490 -0.0003 7 6 4.9613 -2.2581 -0.0006 8 8 5.4369 -2.6497 1.0488 9 6 5.3595 -2.8827 -1.2630 10 1 5.0097 -2.4765 -2.2005 11 6 6.1940 -4.0074 -1.2552 12 7 6.6169 -4.4993 -0.1208 13 14 6.7016 -4.8050 -2.8662 14 1 7.9597 -4.1830 -3.3516 15 1 6.9185 -6.2585 -2.6523 16 1 5.6303 -4.6076 -3.8754 17 6 3.5713 -0.6890 1.2641 18 1 3.9416 -1.2830 2.0996 19 6 4.0455 0.7344 1.4069 20 6 4.4652 1.3131 2.5462 21 6 4.8141 2.6450 2.2248 22 6 4.5872 2.8003 0.9081 23 8 4.1216 1.6398 0.4179 24 6 2.0398 -0.7211 1.2500 25 1 -0.3633 0.5143 0.8898 26 1 -0.3634 0.5135 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.6977 -1.7555 -1.2386 29 1 1.6567 -0.2207 -2.1399 30 1 3.9416 -1.2843 -2.0987 31 1 3.9142 0.3410 -1.3674 32 1 7.1952 -5.2780 -0.1153 33 1 4.5205 0.8507 3.5206 34 1 5.1913 3.3938 2.9056 35 1 4.7509 3.7050 0.3414 36 1 1.6977 -1.7559 1.2380 37 1 1.6573 -0.2211 2.1398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153927669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -28.972224 kcal Electronic energy + Delta-G solvation = -20703.519096 eV Core-core repulsion = 17640.182044 eV Total energy + Delta-G solvation = -3063.337053 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.18101 -38.74278 -36.14647 -33.04672 -32.69683 -32.40199 -31.43473 -28.32629 -27.47905 -26.12988 -23.03494 -22.54323 -21.46491 -20.40472 -20.02296 -18.79467 -16.74323 -16.43660 -15.71469 -15.68801 -14.68413 -14.31598 -14.13427 -13.91813 -13.79297 -13.01776 -12.85750 -12.48841 -12.39015 -12.36249 -12.01948 -11.94457 -11.53434 -11.39355 -11.15419 -11.00272 -10.80694 -10.52084 -10.42113 -10.24872 -10.00281 -9.66837 -9.49585 -8.87529 -8.04321 -7.60102 -7.31578 -6.22126 -4.66703 2.17554 3.01057 3.12897 3.19896 3.22723 3.43599 4.06635 4.50889 4.53900 5.00020 5.12377 5.14542 5.25907 5.39929 5.45702 5.63901 5.75810 5.80762 5.91269 5.96007 6.02399 6.08863 6.14311 6.17394 6.27610 6.36760 6.43343 6.45682 6.51140 6.57108 6.59535 6.88495 6.94292 7.44637 7.54210 7.60792 8.11066 8.31594 9.00118 9.38727 10.54050 10.72576 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020777 B = 0.006948 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.346752 B = 4028.752440 C = 4629.409758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.127 4.127 5 C 0.118 3.882 6 N -0.631 5.631 7 C 0.560 3.440 8 O -0.577 6.577 9 C -0.541 4.541 10 H 0.074 0.926 11 C 0.088 3.912 12 N -0.767 5.767 13 Si 0.907 3.093 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.264 1.264 17 C 0.222 3.778 18 H 0.118 0.882 19 C 0.016 3.984 20 C -0.226 4.226 21 C -0.212 4.212 22 C -0.064 4.064 23 O -0.163 6.163 24 C -0.118 4.118 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.269 0.731 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.194 0.806 36 H 0.074 0.926 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.672 10.593 -0.600 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.166 4.166 5 C -0.006 4.006 6 N -0.368 5.368 7 C 0.367 3.633 8 O -0.459 6.459 9 C -0.578 4.578 10 H 0.092 0.908 11 C -0.132 4.132 12 N -0.396 5.396 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.188 1.188 17 C 0.116 3.884 18 H 0.136 0.864 19 C -0.037 4.037 20 C -0.246 4.246 21 C -0.231 4.231 22 C -0.132 4.132 23 O -0.059 6.059 24 C -0.157 4.157 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.211 0.789 36 H 0.092 0.908 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.361 10.131 -0.235 13.137 hybrid contribution 0.412 -0.063 -0.555 0.694 sum -7.949 10.068 -0.790 12.852 Atomic orbital electron populations 1.21815 0.95749 1.01504 1.00997 1.21119 0.94792 0.99781 0.95329 0.91151 1.21982 0.97233 1.00647 0.96724 1.21551 0.92106 0.98291 0.88691 1.48279 1.47378 1.38350 1.02775 1.18290 0.77055 0.77190 0.90769 1.90595 1.56797 1.64316 1.34211 1.20963 1.31608 1.13306 0.91883 0.90792 1.25732 0.94261 0.96255 0.96981 1.70011 1.24896 1.18487 1.26191 0.86385 0.79543 0.78481 0.82475 1.19714 1.20432 1.18829 1.19443 0.92640 0.83997 0.92315 0.86416 1.23429 1.01959 0.92378 0.85889 1.21523 1.08405 0.95177 0.99469 1.21702 1.07651 0.97727 0.96069 1.23923 1.05021 0.89468 0.94776 1.84137 1.65066 1.19145 1.37518 1.21999 0.94533 1.01377 0.97767 0.93191 0.93040 0.92816 0.91674 0.92086 0.88888 0.93161 0.92056 0.83937 0.84170 0.78934 0.90752 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 37.15 0.34 -1.38 16 2 C -0.09 -1.35 2.50 -90.58 -0.23 -1.58 16 3 H 0.07 1.08 6.42 -51.93 -0.33 0.75 16 4 C -0.13 -2.01 5.36 -26.61 -0.14 -2.15 16 5 C 0.12 2.26 5.91 -3.71 -0.02 2.24 16 6 N -0.63 -14.42 2.67 -168.18 -0.45 -14.86 16 7 C 0.56 15.89 7.61 -12.99 -0.10 15.79 16 8 O -0.58 -18.52 14.48 5.20 0.08 -18.45 16 9 C -0.54 -15.09 8.88 -35.63 -0.32 -15.41 16 10 H 0.07 1.88 5.64 -52.49 -0.30 1.59 16 11 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 12 N -0.77 -22.84 11.84 55.55 0.66 -22.19 16 13 Si 0.91 19.99 29.56 -169.99 -5.02 14.96 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 17 C 0.22 4.45 3.04 -68.75 -0.21 4.24 16 18 H 0.12 2.62 7.04 -51.93 -0.37 2.25 16 19 C 0.02 0.30 5.50 -35.62 -0.20 0.10 16 20 C -0.23 -3.89 10.80 -39.70 -0.43 -4.32 16 21 C -0.21 -3.17 10.91 -39.70 -0.43 -3.60 16 22 C -0.06 -0.94 12.09 29.42 0.36 -0.58 16 23 O -0.16 -2.89 7.30 5.72 0.04 -2.85 16 24 C -0.12 -1.92 4.82 -26.61 -0.13 -2.05 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.87 5.30 -51.93 -0.28 1.59 16 31 H 0.05 0.95 6.30 -51.93 -0.33 0.62 16 32 H 0.27 7.26 8.29 -40.82 -0.34 6.93 16 33 H 0.14 2.26 8.06 -52.49 -0.42 1.83 16 34 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.19 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 299.45 15.07 4.51 4.51 Total: -1.00 -33.54 299.45 -6.75 -40.29 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.96 Total: 4.95 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.60 Total: -6.37 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.21 Total: -37.05 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.12 Total: -21.30 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.54 -6.75 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153927669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.314 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds