Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.46737 * 2 1 4 4 C 1.53043 * 109.45898 * 240.04173 * 2 1 3 5 5 C 1.53191 * 109.31623 * 178.61467 * 4 2 1 6 6 N 1.46932 * 108.77241 * 54.63851 * 5 4 2 7 7 C 1.34777 * 120.62834 * 126.36895 * 6 5 4 8 8 O 1.21690 * 119.99359 * 174.75214 * 7 6 5 9 9 C 1.46374 * 120.00129 * 354.75460 * 7 6 5 10 10 H 1.07994 * 120.00208 * 5.72026 * 9 7 6 11 11 C 1.40049 * 119.99887 * 185.72324 * 9 7 6 12 12 N 1.30678 * 119.99928 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 119.99897 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46809 * 90.00460 * 13 11 9 15 15 H 1.48507 * 109.47177 * 209.99787 * 13 11 9 16 16 H 1.48494 * 109.47139 * 330.00113 * 13 11 9 17 17 C 1.46926 * 118.73787 * 306.39176 * 6 5 4 18 18 H 1.08995 * 109.70189 * 173.47077 * 17 6 5 19 19 C 1.50705 * 109.58658 * 293.82221 * 17 6 5 20 20 C 1.34508 * 125.78867 * 219.29328 * 19 17 6 21 21 C 1.41382 * 106.84056 * 179.97438 * 20 19 17 22 22 C 1.34512 * 106.84133 * 359.97438 * 21 20 19 23 23 O 1.34301 * 108.41932 * 0.02562 * 22 21 20 24 24 C 1.53045 * 109.45895 * 119.97965 * 2 1 3 25 25 H 1.09005 * 109.46719 * 300.02482 * 1 2 3 26 26 H 1.08994 * 109.47404 * 60.01938 * 1 2 3 27 27 H 1.08994 * 109.47856 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.49773 * 298.56962 * 4 2 1 29 29 H 1.09004 * 109.49547 * 58.63397 * 4 2 1 30 30 H 1.09000 * 109.58934 * 174.42312 * 5 4 2 31 31 H 1.09000 * 109.58476 * 294.85089 * 5 4 2 32 32 H 0.96993 * 120.00128 * 180.02562 * 12 11 9 33 33 H 1.07998 * 126.58451 * 359.69855 * 20 19 17 34 34 H 1.08004 * 126.58111 * 180.02562 * 21 20 19 35 35 H 1.07998 * 125.78902 * 179.97438 * 22 21 20 36 36 H 1.08996 * 109.50008 * 61.43155 * 24 2 1 37 37 H 1.08996 * 109.49672 * 301.32577 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5713 -0.6885 -1.2645 6 7 4.0678 -1.2490 -0.0003 7 6 4.9613 -2.2581 -0.0006 8 8 5.4369 -2.6497 1.0488 9 6 5.3595 -2.8827 -1.2630 10 1 5.0097 -2.4765 -2.2005 11 6 6.1940 -4.0074 -1.2552 12 7 6.6169 -4.4993 -0.1208 13 14 6.7016 -4.8050 -2.8662 14 1 7.9597 -4.1830 -3.3516 15 1 6.9185 -6.2585 -2.6523 16 1 5.6303 -4.6076 -3.8754 17 6 3.5713 -0.6890 1.2641 18 1 3.9416 -1.2830 2.0996 19 6 4.0455 0.7344 1.4069 20 6 4.4652 1.3131 2.5462 21 6 4.8141 2.6450 2.2248 22 6 4.5872 2.8003 0.9081 23 8 4.1216 1.6398 0.4179 24 6 2.0398 -0.7211 1.2500 25 1 -0.3633 0.5143 0.8898 26 1 -0.3634 0.5135 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.6977 -1.7555 -1.2386 29 1 1.6567 -0.2207 -2.1399 30 1 3.9416 -1.2843 -2.0987 31 1 3.9142 0.3410 -1.3674 32 1 7.1952 -5.2780 -0.1153 33 1 4.5205 0.8507 3.5206 34 1 5.1913 3.3938 2.9056 35 1 4.7509 3.7050 0.3414 36 1 1.6977 -1.7559 1.2380 37 1 1.6573 -0.2211 2.1398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153927669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -50.310536 kcal Electronic energy + Delta-G solvation = -20704.444395 eV Core-core repulsion = 17640.182044 eV Total energy + Delta-G solvation = -3064.262351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.48658 -40.39445 -38.00609 -34.82109 -34.33051 -34.06009 -32.86514 -29.74569 -28.95401 -27.96965 -24.50437 -24.01726 -22.78372 -21.96271 -21.45253 -20.27732 -18.58315 -17.79883 -17.75796 -17.06691 -16.32180 -15.99286 -15.52289 -15.41437 -15.15875 -14.57078 -14.32237 -14.08884 -13.74548 -13.72224 -13.62456 -13.24900 -13.18158 -12.83755 -12.68918 -12.62680 -12.39961 -12.22075 -11.98958 -11.75760 -11.31951 -11.17678 -10.94454 -10.76746 -9.81542 -9.31020 -9.17128 -8.30477 -6.85484 0.87496 1.38866 1.40279 1.55503 1.74492 2.12168 2.23795 2.46774 2.80902 3.55113 3.70121 3.88715 3.94384 4.05691 4.18565 4.25727 4.30471 4.50269 4.62169 4.73313 4.78637 4.82731 4.90359 4.95485 5.00636 5.05600 5.08394 5.19387 5.22427 5.23998 5.39612 5.42379 5.60706 5.66052 5.75211 6.11522 6.22986 6.42698 6.86524 7.38840 8.43778 8.65381 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020777 B = 0.006948 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.346752 B = 4028.752440 C = 4629.409758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.070 0.930 4 C -0.120 4.120 5 C 0.114 3.886 6 N -0.632 5.632 7 C 0.543 3.457 8 O -0.631 6.631 9 C -0.567 4.567 10 H 0.094 0.906 11 C 0.029 3.971 12 N -0.822 5.822 13 Si 0.995 3.005 14 H -0.263 1.263 15 H -0.273 1.273 16 H -0.245 1.245 17 C 0.218 3.782 18 H 0.079 0.921 19 C -0.015 4.015 20 C -0.234 4.234 21 C -0.220 4.220 22 C -0.053 4.053 23 O -0.176 6.176 24 C -0.111 4.111 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.274 0.726 33 H 0.145 0.855 34 H 0.171 0.829 35 H 0.239 0.761 36 H 0.062 0.938 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 12.589 -2.636 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.158 4.158 5 C -0.008 4.008 6 N -0.367 5.367 7 C 0.349 3.651 8 O -0.519 6.519 9 C -0.603 4.603 10 H 0.112 0.888 11 C -0.186 4.186 12 N -0.452 5.452 13 Si 0.814 3.186 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.169 1.169 17 C 0.113 3.887 18 H 0.097 0.903 19 C -0.066 4.066 20 C -0.254 4.254 21 C -0.239 4.239 22 C -0.120 4.120 23 O -0.072 6.072 24 C -0.149 4.149 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.163 0.837 34 H 0.188 0.812 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.614 12.180 -2.282 15.684 hybrid contribution 0.801 -0.548 0.158 0.984 sum -8.812 11.632 -2.124 14.747 Atomic orbital electron populations 1.21750 0.93066 1.02025 1.02517 1.21071 0.96860 0.98979 0.93453 0.91208 1.21936 0.94307 1.00724 0.98859 1.21703 0.94697 0.97919 0.86510 1.48087 1.46240 1.37242 1.05169 1.18686 0.77678 0.78256 0.90454 1.90538 1.59061 1.66500 1.35789 1.21490 1.32213 1.14012 0.92583 0.88847 1.26997 0.93585 0.96540 1.01483 1.70190 1.25997 1.19402 1.29590 0.85058 0.79574 0.77189 0.76765 1.18818 1.19733 1.16851 1.19432 0.94988 0.84612 0.89645 0.90288 1.23029 1.04604 0.92147 0.86866 1.21835 1.07565 0.96650 0.99330 1.22058 1.07759 0.97105 0.96986 1.24868 1.02491 0.89430 0.95206 1.84093 1.65649 1.19978 1.37487 1.21957 0.91656 1.01315 0.99975 0.92016 0.91226 0.92814 0.92732 0.88853 0.90135 0.92446 0.91608 0.83718 0.81158 0.74456 0.91944 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.19 71.98 0.66 -2.19 16 2 C -0.09 -2.35 2.50 -10.77 -0.03 -2.38 16 3 H 0.07 1.98 6.42 -2.39 -0.02 1.97 16 4 C -0.12 -3.60 5.36 30.67 0.16 -3.44 16 5 C 0.11 4.39 5.91 86.36 0.51 4.90 16 6 N -0.63 -30.00 2.67 -804.21 -2.15 -32.15 16 7 C 0.54 32.40 7.61 86.36 0.66 33.06 16 8 O -0.63 -43.39 14.48 -4.32 -0.06 -43.45 16 9 C -0.57 -32.52 8.88 24.83 0.22 -32.30 16 10 H 0.09 4.80 5.64 -2.91 -0.02 4.78 16 11 C 0.03 1.63 5.50 85.30 0.47 2.10 16 12 N -0.82 -51.02 11.84 21.84 0.26 -50.77 16 13 Si 1.00 41.25 29.56 68.60 2.03 43.28 16 14 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 15 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 16 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 17 C 0.22 9.15 3.04 44.23 0.13 9.29 16 18 H 0.08 3.85 7.04 -2.39 -0.02 3.83 16 19 C -0.01 -0.56 5.50 24.83 0.14 -0.42 16 20 C -0.23 -8.04 10.80 22.19 0.24 -7.80 16 21 C -0.22 -6.08 10.91 22.19 0.24 -5.84 16 22 C -0.05 -1.40 12.09 66.97 0.81 -0.59 16 23 O -0.18 -5.99 7.30 -2.46 -0.02 -6.01 16 24 C -0.11 -3.61 4.82 30.67 0.15 -3.47 16 25 H 0.06 1.16 8.14 -2.38 -0.02 1.15 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.08 3.24 5.30 -2.39 -0.01 3.23 16 31 H 0.06 2.12 6.30 -2.39 -0.02 2.10 16 32 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 33 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 34 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.24 3.80 8.06 -2.91 -0.02 3.77 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -77.80 299.45 5.50 -72.31 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.07 Total: 25.87 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 4.37 Total: -9.08 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.89 Total: -82.92 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -0.08 Total: -49.46 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -77.80 5.50 -72.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153927669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.998 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds