Wall clock time and date at job start Mon Mar 30 2020 07:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00396 * 2 1 4 4 H 1.48496 * 109.47057 * 270.00203 * 3 2 1 5 5 H 1.48508 * 109.46751 * 29.99738 * 3 2 1 6 6 H 1.48497 * 109.47201 * 149.99556 * 3 2 1 7 7 C 1.37879 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00546 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47279 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.47128 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00033 * 184.51973 * 11 10 9 13 13 H 1.09006 * 109.47052 * 326.34294 * 12 11 10 14 14 C 1.50700 * 109.47065 * 206.34424 * 12 11 10 15 15 C 1.38244 * 119.97609 * 319.72445 * 14 12 11 16 16 C 1.38204 * 120.02701 * 179.73030 * 15 14 12 17 17 C 1.38462 * 119.96997 * 0.56654 * 16 15 14 18 18 F 1.35097 * 120.02149 * 179.68713 * 17 16 15 19 19 C 1.38459 * 119.95052 * 359.70449 * 17 16 15 20 20 C 1.38198 * 119.97215 * 0.02562 * 19 17 16 21 21 C 1.53001 * 109.47097 * 86.34241 * 12 11 10 22 22 C 1.53002 * 117.49793 * 185.66098 * 21 12 11 23 23 C 1.52999 * 60.03192 * 252.49911 * 22 21 12 24 24 H 0.97005 * 119.99606 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46966 * 60.00323 * 9 7 2 26 26 H 1.08998 * 109.47218 * 300.00814 * 9 7 2 27 27 H 1.09000 * 109.47083 * 60.00119 * 10 9 7 28 28 H 1.09001 * 109.46719 * 300.00272 * 10 9 7 29 29 H 1.00901 * 111.00493 * 308.47306 * 11 10 9 30 30 H 1.08003 * 119.98314 * 359.97438 * 15 14 12 31 31 H 1.07999 * 120.01278 * 180.25277 * 16 15 14 32 32 H 1.07999 * 120.01446 * 180.02562 * 19 17 16 33 33 H 1.08009 * 119.98199 * 179.97438 * 20 19 17 34 34 H 1.08995 * 115.55940 * 331.35033 * 21 12 11 35 35 H 1.09002 * 117.49838 * 359.97438 * 22 21 12 36 36 H 1.09000 * 117.49511 * 144.99977 * 22 21 12 37 37 H 1.09004 * 117.49968 * 107.50282 * 23 22 21 38 38 H 1.08999 * 117.50031 * 252.51996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9342 -0.0012 12 6 2.4314 -6.0738 0.1069 13 1 3.3622 -5.8392 -0.4096 14 6 1.8012 -7.2901 -0.5212 15 6 0.4557 -7.5458 -0.3333 16 6 -0.1246 -8.6579 -0.9134 17 6 0.6448 -9.5224 -1.6734 18 9 0.0800 -10.6133 -2.2358 19 6 1.9936 -9.2684 -1.8563 20 6 2.5703 -8.1527 -1.2798 21 6 2.7238 -6.3552 1.5821 22 6 3.7696 -7.4247 1.9036 23 6 2.2858 -7.7101 2.1439 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 0.8221 -4.9546 0.7361 30 1 -0.1431 -6.8740 0.2639 31 1 -1.1767 -8.8551 -0.7698 32 1 2.5946 -9.9418 -2.4493 33 1 3.6225 -7.9546 -1.4220 34 1 2.6655 -5.4926 2.2459 35 1 4.2490 -7.9282 1.0641 36 1 4.3996 -7.2655 2.7787 37 1 1.7893 -8.4010 1.4625 38 1 1.9396 -7.7384 3.1771 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155020419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:52 Heat of formation + Delta-G solvation = -4.828292 kcal Electronic energy + Delta-G solvation = -19124.426013 eV Core-core repulsion = 16074.508710 eV Total energy + Delta-G solvation = -3049.917304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.90719 -39.94901 -37.31040 -35.15159 -32.93799 -31.18540 -31.06039 -28.85754 -25.64394 -23.76810 -22.99929 -22.34926 -22.07988 -20.59809 -19.84490 -17.68156 -16.52409 -16.30592 -16.01645 -15.67365 -15.50451 -14.89221 -14.48500 -14.25538 -13.87157 -13.55167 -13.43799 -12.93857 -12.80563 -12.32549 -12.18078 -11.68794 -11.47014 -11.44851 -11.12919 -10.97920 -10.92472 -10.57434 -10.48306 -10.03930 -9.99422 -9.42165 -9.18241 -9.10193 -8.50420 -8.37487 -7.89246 -6.01710 -4.04371 1.14245 1.23379 3.31091 3.37334 3.40106 3.57308 3.73737 4.24576 4.41384 4.59451 4.70136 4.75238 4.85424 4.85610 5.00719 5.11444 5.27070 5.34459 5.35519 5.60328 5.62548 5.67854 5.85265 5.90221 5.94819 6.08665 6.10211 6.20224 6.23941 6.34053 6.39766 6.57068 6.88062 6.93495 7.41945 7.68627 7.78822 7.89407 8.04669 8.40730 9.02745 9.59661 11.09672 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.026477 B = 0.003903 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.253707 B = 7171.892239 C = 7727.920025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.066 3.934 11 N -0.680 5.680 12 C 0.153 3.847 13 H 0.087 0.913 14 C -0.062 4.062 15 C -0.064 4.064 16 C -0.155 4.155 17 C 0.085 3.915 18 F -0.146 7.146 19 C -0.155 4.155 20 C -0.092 4.092 21 C -0.178 4.178 22 C -0.176 4.176 23 C -0.179 4.179 24 H 0.261 0.739 25 H 0.025 0.975 26 H 0.013 0.987 27 H 0.019 0.981 28 H 0.059 0.941 29 H 0.339 0.661 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -18.950 1.189 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.309 5.309 12 C 0.042 3.958 13 H 0.105 0.895 14 C -0.063 4.063 15 C -0.082 4.082 16 C -0.174 4.174 17 C 0.066 3.934 18 F -0.125 7.125 19 C -0.174 4.174 20 C -0.111 4.111 21 C -0.198 4.198 22 C -0.214 4.214 23 C -0.216 4.216 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.158 0.842 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.888 -18.872 0.473 19.274 hybrid contribution 0.584 0.848 0.829 1.322 sum 4.472 -18.024 1.302 18.616 Atomic orbital electron populations 1.69972 1.06036 1.26613 1.50599 1.24997 0.94832 0.99215 0.95264 0.86594 0.79796 0.83461 0.78142 1.20615 1.21227 1.19919 1.21159 0.92982 0.90968 1.50954 0.92740 1.19087 0.94030 0.90517 0.97708 1.22206 0.97127 0.88040 0.98815 1.60743 1.15701 1.01964 1.52487 1.20052 0.95569 0.89126 0.91075 0.89462 1.19885 0.93996 0.95575 0.96836 1.20864 0.94490 0.95138 0.97752 1.21153 1.00555 0.95824 0.99870 1.17707 0.92037 0.85675 0.97976 1.91472 1.85440 1.52103 1.83460 1.21028 0.93405 0.99780 1.03155 1.20867 1.00029 0.93558 0.96619 1.23244 1.04894 0.93608 0.98050 1.22876 0.92078 1.03264 1.03153 1.23126 0.97559 0.99105 1.01838 0.92977 0.95624 0.96827 0.96291 0.92240 0.84237 0.84767 0.84975 0.85136 0.85351 0.87283 0.88905 0.89099 0.88224 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 5.19 -27.88 -0.14 0.46 16 10 C 0.07 1.32 5.42 -3.83 -0.02 1.30 16 11 N -0.68 -11.28 5.72 -107.95 -0.62 -11.90 16 12 C 0.15 2.05 2.55 -68.86 -0.18 1.88 16 13 H 0.09 1.20 7.69 -51.93 -0.40 0.80 16 14 C -0.06 -0.77 3.29 -104.62 -0.34 -1.11 16 15 C -0.06 -0.78 7.90 -39.59 -0.31 -1.10 16 16 C -0.16 -1.81 10.03 -39.51 -0.40 -2.20 16 17 C 0.09 1.02 7.30 -39.42 -0.29 0.74 16 18 F -0.15 -1.82 17.27 2.25 0.04 -1.78 16 19 C -0.15 -1.69 10.03 -39.51 -0.40 -2.09 16 20 C -0.09 -1.02 9.63 -39.59 -0.38 -1.41 16 21 C -0.18 -2.16 5.54 -90.58 -0.50 -2.67 16 22 C -0.18 -1.83 10.12 -26.73 -0.27 -2.10 16 23 C -0.18 -1.92 9.44 -26.69 -0.25 -2.17 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.02 0.37 7.78 -51.93 -0.40 -0.03 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.34 5.46 7.82 -39.29 -0.31 5.15 16 30 H 0.13 1.60 7.30 -52.48 -0.38 1.22 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.13 1.20 8.04 -52.48 -0.42 0.77 16 34 H 0.11 1.46 7.91 -51.93 -0.41 1.05 16 35 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.09 5.64 -51.93 -0.29 0.80 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -29.51 321.27 -9.46 -38.96 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.54 Total: 3.16 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -3.89 Total: -23.80 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.12 Total: -37.84 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.51 -9.46 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155020419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.137 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds