Wall clock time and date at job start Mon Mar 30 2020 07:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00396 * 2 1 4 4 H 1.48496 * 109.47057 * 270.00203 * 3 2 1 5 5 H 1.48508 * 109.46751 * 29.99738 * 3 2 1 6 6 H 1.48497 * 109.47201 * 149.99556 * 3 2 1 7 7 C 1.37879 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00546 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47279 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.47128 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00033 * 184.51973 * 11 10 9 13 13 H 1.09006 * 109.47052 * 326.34294 * 12 11 10 14 14 C 1.50700 * 109.47065 * 206.34424 * 12 11 10 15 15 C 1.38244 * 119.97609 * 319.72445 * 14 12 11 16 16 C 1.38204 * 120.02701 * 179.73030 * 15 14 12 17 17 C 1.38462 * 119.96997 * 0.56654 * 16 15 14 18 18 F 1.35097 * 120.02149 * 179.68713 * 17 16 15 19 19 C 1.38459 * 119.95052 * 359.70449 * 17 16 15 20 20 C 1.38198 * 119.97215 * 0.02562 * 19 17 16 21 21 C 1.53001 * 109.47097 * 86.34241 * 12 11 10 22 22 C 1.53002 * 117.49793 * 185.66098 * 21 12 11 23 23 C 1.52999 * 60.03192 * 252.49911 * 22 21 12 24 24 H 0.97005 * 119.99606 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46966 * 60.00323 * 9 7 2 26 26 H 1.08998 * 109.47218 * 300.00814 * 9 7 2 27 27 H 1.09000 * 109.47083 * 60.00119 * 10 9 7 28 28 H 1.09001 * 109.46719 * 300.00272 * 10 9 7 29 29 H 1.00901 * 111.00493 * 308.47306 * 11 10 9 30 30 H 1.08003 * 119.98314 * 359.97438 * 15 14 12 31 31 H 1.07999 * 120.01278 * 180.25277 * 16 15 14 32 32 H 1.07999 * 120.01446 * 180.02562 * 19 17 16 33 33 H 1.08009 * 119.98199 * 179.97438 * 20 19 17 34 34 H 1.08995 * 115.55940 * 331.35033 * 21 12 11 35 35 H 1.09002 * 117.49838 * 359.97438 * 22 21 12 36 36 H 1.09000 * 117.49511 * 144.99977 * 22 21 12 37 37 H 1.09004 * 117.49968 * 107.50282 * 23 22 21 38 38 H 1.08999 * 117.50031 * 252.51996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9342 -0.0012 12 6 2.4314 -6.0738 0.1069 13 1 3.3622 -5.8392 -0.4096 14 6 1.8012 -7.2901 -0.5212 15 6 0.4557 -7.5458 -0.3333 16 6 -0.1246 -8.6579 -0.9134 17 6 0.6448 -9.5224 -1.6734 18 9 0.0800 -10.6133 -2.2358 19 6 1.9936 -9.2684 -1.8563 20 6 2.5703 -8.1527 -1.2798 21 6 2.7238 -6.3552 1.5821 22 6 3.7696 -7.4247 1.9036 23 6 2.2858 -7.7101 2.1439 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 0.8221 -4.9546 0.7361 30 1 -0.1431 -6.8740 0.2639 31 1 -1.1767 -8.8551 -0.7698 32 1 2.5946 -9.9418 -2.4493 33 1 3.6225 -7.9546 -1.4220 34 1 2.6655 -5.4926 2.2459 35 1 4.2490 -7.9282 1.0641 36 1 4.3996 -7.2655 2.7787 37 1 1.7893 -8.4010 1.4625 38 1 1.9396 -7.7384 3.1771 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155020419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:52 Heat of formation + Delta-G solvation = -20.365646 kcal Electronic energy + Delta-G solvation = -19125.099763 eV Core-core repulsion = 16074.508710 eV Total energy + Delta-G solvation = -3050.591054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.84652 -40.91493 -38.29968 -36.59172 -34.84779 -32.42550 -32.05439 -30.42349 -27.11532 -25.29388 -24.07098 -23.25707 -22.94182 -22.37914 -20.84796 -18.61792 -18.50179 -17.34019 -17.19823 -16.67687 -16.45274 -16.37091 -16.09808 -15.29753 -15.08543 -14.82746 -14.40722 -14.28522 -14.16377 -13.75958 -13.25215 -13.18657 -12.89991 -12.75216 -12.51504 -12.34801 -12.26713 -11.97865 -11.86790 -11.42827 -11.37171 -11.16165 -10.90577 -10.55495 -9.98638 -9.46476 -9.24085 -8.19434 -6.30525 0.21179 0.35044 1.41361 1.42604 1.53430 2.41105 2.65017 2.83481 3.14463 3.34241 3.43388 3.75268 3.83067 3.89735 4.02610 4.07568 4.17077 4.38989 4.40979 4.52974 4.61954 4.71221 4.75650 4.80485 4.98868 5.04157 5.05835 5.09245 5.21015 5.26381 5.29349 5.36616 5.45406 5.60581 5.70620 5.81609 5.97911 6.16332 6.29457 6.53299 6.87021 7.38864 8.92595 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.026477 B = 0.003903 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.253707 B = 7171.892239 C = 7727.920025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.031 3.969 10 C 0.087 3.913 11 N -0.684 5.684 12 C 0.158 3.842 13 H 0.086 0.914 14 C -0.070 4.070 15 C -0.074 4.074 16 C -0.158 4.158 17 C 0.073 3.927 18 F -0.150 7.150 19 C -0.151 4.151 20 C -0.091 4.091 21 C -0.193 4.193 22 C -0.162 4.162 23 C -0.172 4.172 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.008 1.008 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.340 0.660 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 -19.706 1.179 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.042 4.042 11 N -0.314 5.314 12 C 0.048 3.952 13 H 0.104 0.896 14 C -0.071 4.071 15 C -0.093 4.093 16 C -0.177 4.177 17 C 0.054 3.946 18 F -0.129 7.129 19 C -0.169 4.169 20 C -0.109 4.109 21 C -0.213 4.213 22 C -0.200 4.200 23 C -0.209 4.209 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.010 0.990 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.615 -19.653 0.465 20.445 hybrid contribution 0.009 1.016 0.824 1.308 sum 5.624 -18.637 1.289 19.510 Atomic orbital electron populations 1.70107 1.07812 1.27737 1.51530 1.25951 0.95724 1.03300 0.94682 0.85453 0.78691 0.78458 0.78470 1.19857 1.20812 1.18635 1.21616 0.93558 0.92242 1.50748 0.92097 1.18935 0.94342 0.92377 0.95028 1.21777 0.95624 0.87912 0.98846 1.60636 1.16245 1.01596 1.52912 1.20010 0.94761 0.88206 0.92234 0.89567 1.19837 0.94211 0.95497 0.97568 1.20881 0.94654 0.95483 0.98251 1.21284 1.01272 0.95538 0.99616 1.17911 0.92695 0.85720 0.98321 1.91461 1.85595 1.52303 1.83561 1.21279 0.93113 0.99835 1.02687 1.21077 1.00962 0.93114 0.95784 1.23041 1.07428 0.93950 0.96858 1.22977 0.91880 1.01344 1.03767 1.23130 0.98053 0.97680 1.02025 0.92802 0.98827 0.98974 0.95864 0.92426 0.84115 0.85194 0.83838 0.82919 0.83276 0.88810 0.87787 0.88125 0.88321 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.61 5.19 29.85 0.15 1.76 16 10 C 0.09 3.53 5.42 86.30 0.47 4.00 16 11 N -0.68 -22.91 5.72 -495.45 -2.83 -25.74 16 12 C 0.16 4.11 2.55 44.17 0.11 4.23 16 13 H 0.09 2.26 7.69 -2.38 -0.02 2.24 16 14 C -0.07 -1.65 3.29 -19.86 -0.07 -1.72 16 15 C -0.07 -1.77 7.90 22.26 0.18 -1.59 16 16 C -0.16 -3.54 10.03 22.32 0.22 -3.32 16 17 C 0.07 1.63 7.30 22.38 0.16 1.80 16 18 F -0.15 -3.55 17.27 44.97 0.78 -2.78 16 19 C -0.15 -2.94 10.03 22.31 0.22 -2.71 16 20 C -0.09 -1.81 9.63 22.26 0.21 -1.60 16 21 C -0.19 -4.49 5.54 -10.77 -0.06 -4.55 16 22 C -0.16 -2.99 10.12 30.59 0.31 -2.68 16 23 C -0.17 -3.40 9.44 30.62 0.29 -3.11 16 24 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 25 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.02 0.92 7.78 -2.39 -0.02 0.90 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.34 11.25 7.82 -89.69 -0.70 10.55 16 30 H 0.13 3.14 7.30 -2.91 -0.02 3.11 16 31 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.15 2.31 8.04 -2.91 -0.02 2.28 16 34 H 0.09 2.48 7.91 -2.39 -0.02 2.47 16 35 H 0.10 1.70 8.11 -2.39 -0.02 1.68 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 2.00 5.64 -2.38 -0.01 1.99 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -63.23 321.27 3.51 -59.72 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.35 Total: 18.66 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 2.91 Total: -39.44 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -2.55 Total: -82.18 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -63.23 3.51 -59.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155020419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.353 kcal (2) G-P(sol) polarization free energy of solvation -63.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds