Wall clock time and date at job start Mon Mar 30 2020 07:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21292 * 119.99931 * 2 1 4 4 C 1.46796 * 120.00080 * 179.97438 * 2 1 3 5 5 C 1.40015 * 120.18631 * 359.72329 * 4 2 1 6 6 C 1.38299 * 119.79981 * 179.74160 * 5 4 2 7 7 N 1.39961 * 119.90861 * 180.25434 * 6 5 4 8 8 C 1.39198 * 120.18302 * 0.51657 * 6 5 4 9 9 C 1.38004 * 120.38642 * 359.76234 * 8 6 5 10 10 C 1.38660 * 120.19173 * 359.97438 * 9 8 6 11 11 O 1.35689 * 120.09218 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99992 * 0.02562 * 11 10 9 13 13 C 1.53009 * 109.46966 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.46727 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47114 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99592 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00336 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00118 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00171 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46919 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47140 * 119.99880 * 19 17 15 22 22 H 1.48501 * 109.47458 * 240.00113 * 19 17 15 23 23 H 1.08997 * 109.47392 * 239.99785 * 1 2 3 24 24 H 1.08998 * 109.47055 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46932 * 120.00446 * 1 2 3 26 26 H 1.07996 * 120.09884 * 359.97438 * 5 4 2 27 27 H 0.96995 * 120.00174 * 180.26114 * 7 6 5 28 28 H 0.97001 * 119.99984 * 0.25934 * 7 6 5 29 29 H 1.08001 * 119.80550 * 179.74116 * 8 6 5 30 30 H 1.08001 * 119.89872 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.47483 * 299.99566 * 12 11 10 32 32 H 1.08996 * 109.46855 * 60.00098 * 12 11 10 33 33 H 1.09001 * 109.46745 * 299.99934 * 13 12 11 34 34 H 1.08996 * 109.47016 * 60.00488 * 13 12 11 35 35 H 1.09006 * 109.47354 * 299.99712 * 14 13 12 36 36 H 1.09002 * 109.47942 * 60.00147 * 14 13 12 37 37 H 0.97000 * 120.00069 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2410 -1.2713 0.0006 5 6 1.5449 -2.4861 0.0070 6 6 2.2444 -3.6791 0.0020 7 7 1.5509 -4.8948 0.0030 8 6 3.6364 -3.6742 0.0016 9 6 4.3303 -2.4813 0.0012 10 6 3.6448 -1.2759 0.0006 11 8 4.3291 -0.1042 0.0007 12 6 5.7558 -0.1860 0.0008 13 6 6.3475 1.2250 0.0002 14 6 7.8750 1.1373 -0.0003 15 6 8.4579 2.5270 -0.0002 16 1 7.8042 3.3868 -0.0003 17 6 9.8256 2.7009 -0.0001 18 7 10.6217 1.6540 0.0004 19 14 10.5482 4.4236 -0.0008 20 1 9.4485 5.4215 -0.0007 21 1 11.3850 4.6098 1.2118 22 1 11.3854 4.6088 -1.2132 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 0.4650 -2.4915 0.0119 27 1 2.0402 -5.7323 0.0034 28 1 0.5809 -4.8998 0.0033 29 1 4.1766 -4.6094 0.0020 30 1 5.4103 -2.4866 0.0012 31 1 6.0890 -0.7197 0.8907 32 1 6.0891 -0.7198 -0.8892 33 1 6.0142 1.7583 -0.8901 34 1 6.0142 1.7591 0.8899 35 1 8.2087 0.6037 0.8898 36 1 8.2081 0.6033 -0.8903 37 1 11.5839 1.7763 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164992316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:09 Heat of formation + Delta-G solvation = -65.616893 kcal Electronic energy + Delta-G solvation = -18921.943988 eV Core-core repulsion = 15857.017904 eV Total energy + Delta-G solvation = -3064.926085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37228 -38.45278 -37.82337 -34.28574 -33.57845 -31.98578 -31.59123 -29.35867 -28.12122 -26.64600 -24.18104 -23.30475 -21.55358 -20.39835 -19.65197 -17.87770 -17.12795 -16.83135 -16.17783 -15.76214 -15.21145 -15.05439 -14.77650 -14.64357 -14.38970 -13.95089 -13.42288 -13.07620 -12.67412 -12.61449 -12.29218 -12.17718 -12.13681 -11.71959 -11.35093 -11.18741 -10.80867 -10.53708 -10.41540 -9.90475 -9.56939 -9.52165 -9.44430 -9.09825 -9.09274 -8.34573 -7.26918 -5.99804 -4.01621 0.69848 1.56313 2.56226 3.33575 3.40659 3.45898 3.55624 3.71339 3.82193 4.13989 4.48679 4.71262 4.87014 5.07801 5.16571 5.30810 5.36547 5.37426 5.43525 5.61354 5.63853 5.71126 5.81565 5.97042 6.06855 6.13054 6.35011 6.49787 6.65899 6.80023 7.08014 7.27795 7.57524 7.65382 7.73752 7.77512 7.79954 7.99729 8.42615 9.05011 9.62546 11.11837 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029028 B = 0.003692 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.359412 B = 7581.342125 C = 8514.649328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.385 3.615 3 O -0.431 6.431 4 C -0.171 4.171 5 C -0.118 4.118 6 C 0.155 3.845 7 N -0.886 5.886 8 C -0.118 4.118 9 C -0.178 4.178 10 C 0.147 3.853 11 O -0.288 6.288 12 C 0.054 3.946 13 C -0.106 4.106 14 C 0.025 3.975 15 C -0.518 4.518 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.132 0.868 27 H 0.396 0.604 28 H 0.395 0.605 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.835 -14.282 0.007 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.261 3.739 3 O -0.305 6.305 4 C -0.173 4.173 5 C -0.141 4.141 6 C 0.053 3.947 7 N -0.428 5.428 8 C -0.141 4.141 9 C -0.197 4.197 10 C 0.097 3.903 11 O -0.199 6.199 12 C -0.020 4.020 13 C -0.144 4.144 14 C -0.013 4.013 15 C -0.556 4.556 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.150 0.850 27 H 0.224 0.776 28 H 0.223 0.777 29 H 0.143 0.857 30 H 0.155 0.845 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.340 -13.469 0.008 24.395 hybrid contribution 0.521 0.063 -0.001 0.525 sum -19.819 -13.406 0.007 23.927 Atomic orbital electron populations 1.22218 0.94400 1.04731 1.03920 1.22161 0.91129 0.87702 0.72885 1.90649 1.71772 1.33674 1.34385 1.19669 0.90851 0.95085 1.11716 1.20562 0.99173 0.89525 1.04887 1.17497 0.91222 0.86529 0.99413 1.42306 1.08517 1.04623 1.87356 1.20623 0.92034 0.98148 1.03269 1.21184 1.00888 0.91380 1.06288 1.19186 0.90811 0.85909 0.94364 1.86325 1.20997 1.26285 1.86302 1.23251 0.76406 1.01778 1.00575 1.21687 0.98687 0.91855 1.02177 1.19056 0.87125 0.97663 0.97409 1.21252 0.91522 0.92470 1.50372 0.92357 1.25023 0.97260 0.96957 0.95274 1.69974 1.03521 1.29091 1.51049 0.86499 0.79128 0.84653 0.77539 1.19620 1.21003 1.20998 0.89356 0.89971 0.89360 0.85045 0.77643 0.77705 0.85677 0.84452 0.92456 0.92463 0.92153 0.92148 0.96370 0.96370 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.70 8.93 36.01 0.32 -1.38 16 2 C 0.38 5.43 7.21 -30.85 -0.22 5.21 16 3 O -0.43 -8.15 15.88 -16.41 -0.26 -8.41 16 4 C -0.17 -2.36 5.88 -104.96 -0.62 -2.98 16 5 C -0.12 -1.21 9.30 -38.89 -0.36 -1.57 16 6 C 0.16 1.52 6.75 -83.77 -0.57 0.95 16 7 N -0.89 -5.48 9.10 32.41 0.29 -5.19 16 8 C -0.12 -1.29 9.87 -39.31 -0.39 -1.68 16 9 C -0.18 -2.42 9.02 -39.51 -0.36 -2.78 16 10 C 0.15 2.36 6.70 -38.62 -0.26 2.10 16 11 O -0.29 -5.54 8.20 -40.73 -0.33 -5.87 16 12 C 0.05 1.03 4.74 37.16 0.18 1.21 16 13 C -0.11 -2.39 5.52 -26.73 -0.15 -2.54 16 14 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 15 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 16 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 19 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 24 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 25 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.13 0.91 7.05 -52.49 -0.37 0.54 16 27 H 0.40 1.85 8.84 -40.82 -0.36 1.49 16 28 H 0.40 1.67 8.84 -40.82 -0.36 1.31 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.14 1.80 6.29 -52.49 -0.33 1.47 16 31 H 0.06 1.02 7.66 -51.93 -0.40 0.62 16 32 H 0.06 1.01 7.66 -51.93 -0.40 0.62 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -34.53 318.10 -7.89 -42.43 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -5.13 Total: -1.56 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.97 Total: -16.82 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 1.03 Total: -31.65 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.59 Total: -14.28 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.53 -7.89 -42.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164992316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.191 kcal (2) G-P(sol) polarization free energy of solvation -34.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds