Wall clock time and date at job start Mon Mar 30 2020 07:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21292 * 119.99931 * 2 1 4 4 C 1.46796 * 120.00080 * 179.97438 * 2 1 3 5 5 C 1.40015 * 120.18631 * 359.72329 * 4 2 1 6 6 C 1.38299 * 119.79981 * 179.74160 * 5 4 2 7 7 N 1.39961 * 119.90861 * 180.25434 * 6 5 4 8 8 C 1.39198 * 120.18302 * 0.51657 * 6 5 4 9 9 C 1.38004 * 120.38642 * 359.76234 * 8 6 5 10 10 C 1.38660 * 120.19173 * 359.97438 * 9 8 6 11 11 O 1.35689 * 120.09218 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99992 * 0.02562 * 11 10 9 13 13 C 1.53009 * 109.46966 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.46727 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47114 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99592 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00336 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00118 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00171 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46919 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47140 * 119.99880 * 19 17 15 22 22 H 1.48501 * 109.47458 * 240.00113 * 19 17 15 23 23 H 1.08997 * 109.47392 * 239.99785 * 1 2 3 24 24 H 1.08998 * 109.47055 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46932 * 120.00446 * 1 2 3 26 26 H 1.07996 * 120.09884 * 359.97438 * 5 4 2 27 27 H 0.96995 * 120.00174 * 180.26114 * 7 6 5 28 28 H 0.97001 * 119.99984 * 0.25934 * 7 6 5 29 29 H 1.08001 * 119.80550 * 179.74116 * 8 6 5 30 30 H 1.08001 * 119.89872 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.47483 * 299.99566 * 12 11 10 32 32 H 1.08996 * 109.46855 * 60.00098 * 12 11 10 33 33 H 1.09001 * 109.46745 * 299.99934 * 13 12 11 34 34 H 1.08996 * 109.47016 * 60.00488 * 13 12 11 35 35 H 1.09006 * 109.47354 * 299.99712 * 14 13 12 36 36 H 1.09002 * 109.47942 * 60.00147 * 14 13 12 37 37 H 0.97000 * 120.00069 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2410 -1.2713 0.0006 5 6 1.5449 -2.4861 0.0070 6 6 2.2444 -3.6791 0.0020 7 7 1.5509 -4.8948 0.0030 8 6 3.6364 -3.6742 0.0016 9 6 4.3303 -2.4813 0.0012 10 6 3.6448 -1.2759 0.0006 11 8 4.3291 -0.1042 0.0007 12 6 5.7558 -0.1860 0.0008 13 6 6.3475 1.2250 0.0002 14 6 7.8750 1.1373 -0.0003 15 6 8.4579 2.5270 -0.0002 16 1 7.8042 3.3868 -0.0003 17 6 9.8256 2.7009 -0.0001 18 7 10.6217 1.6540 0.0004 19 14 10.5482 4.4236 -0.0008 20 1 9.4485 5.4215 -0.0007 21 1 11.3850 4.6098 1.2118 22 1 11.3854 4.6088 -1.2132 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 0.4650 -2.4915 0.0119 27 1 2.0402 -5.7323 0.0034 28 1 0.5809 -4.8998 0.0033 29 1 4.1766 -4.6094 0.0020 30 1 5.4103 -2.4866 0.0012 31 1 6.0890 -0.7197 0.8907 32 1 6.0891 -0.7198 -0.8892 33 1 6.0142 1.7583 -0.8901 34 1 6.0142 1.7591 0.8899 35 1 8.2087 0.6037 0.8898 36 1 8.2081 0.6033 -0.8903 37 1 11.5839 1.7763 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164992316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:08 Heat of formation + Delta-G solvation = -88.031753 kcal Electronic energy + Delta-G solvation = -18922.915970 eV Core-core repulsion = 15857.017904 eV Total energy + Delta-G solvation = -3065.898066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43697 -39.64433 -38.87788 -36.07574 -34.73621 -33.55509 -32.93558 -30.22373 -29.33421 -28.23564 -25.49803 -24.77327 -22.76265 -22.04539 -20.74482 -19.09756 -18.49554 -17.83863 -17.69718 -17.20480 -16.51417 -16.14588 -15.93073 -15.88708 -15.65477 -15.04431 -14.91653 -14.42774 -13.93988 -13.82849 -13.81126 -13.39109 -12.98073 -12.96170 -12.91444 -12.66516 -12.47073 -12.41823 -12.00723 -11.64363 -11.57923 -11.25527 -10.71938 -10.59393 -10.56626 -10.03680 -8.24308 -8.12547 -6.35265 -0.25990 0.58968 1.38769 1.39091 1.53370 1.58289 2.27996 2.43041 2.88046 3.02563 3.08924 3.27329 3.79820 3.97600 4.00871 4.13534 4.27205 4.31131 4.42722 4.54212 4.64030 4.73330 4.78439 4.80136 4.92392 5.03090 5.05352 5.17333 5.28504 5.42888 5.45643 5.62330 5.64160 5.77632 6.18331 6.48597 6.66894 6.76732 6.79335 7.14075 7.33739 8.87977 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029028 B = 0.003692 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.359412 B = 7581.342125 C = 8514.649328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.379 3.621 3 O -0.496 6.496 4 C -0.186 4.186 5 C -0.107 4.107 6 C 0.168 3.832 7 N -0.867 5.867 8 C -0.121 4.121 9 C -0.189 4.189 10 C 0.096 3.904 11 O -0.316 6.316 12 C 0.069 3.931 13 C -0.094 4.094 14 C 0.032 3.968 15 C -0.548 4.548 16 H 0.056 0.944 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.274 1.274 23 H 0.119 0.881 24 H 0.078 0.922 25 H 0.118 0.882 26 H 0.173 0.827 27 H 0.407 0.593 28 H 0.410 0.590 29 H 0.151 0.849 30 H 0.132 0.868 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.002 0.998 36 H 0.002 0.998 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.103 -15.989 0.010 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.260 3.740 3 O -0.375 6.375 4 C -0.188 4.188 5 C -0.130 4.130 6 C 0.064 3.936 7 N -0.410 5.410 8 C -0.144 4.144 9 C -0.208 4.208 10 C 0.048 3.952 11 O -0.229 6.229 12 C -0.006 4.006 13 C -0.132 4.132 14 C -0.005 4.005 15 C -0.585 4.585 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.200 1.200 23 H 0.137 0.863 24 H 0.097 0.903 25 H 0.137 0.863 26 H 0.190 0.810 27 H 0.236 0.764 28 H 0.240 0.760 29 H 0.169 0.831 30 H 0.149 0.851 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.666 -15.249 0.011 27.318 hybrid contribution 1.094 0.376 -0.002 1.157 sum -21.572 -14.873 0.009 26.202 Atomic orbital electron populations 1.22237 0.89801 1.05568 1.06643 1.23095 0.93675 0.86849 0.70406 1.90628 1.73496 1.35623 1.37720 1.20003 0.90165 0.96612 1.12013 1.20916 1.00998 0.88066 1.02989 1.17614 0.90981 0.87770 0.97263 1.42291 1.09391 1.03749 1.85566 1.20899 0.92967 0.98020 1.02479 1.21223 1.00841 0.91739 1.06990 1.19632 0.91981 0.85512 0.98099 1.86239 1.20210 1.28679 1.87767 1.22862 0.77440 0.99090 1.01221 1.21395 0.96330 0.94280 1.01206 1.18896 0.89631 0.96318 0.95678 1.21640 0.92327 0.93451 1.51128 0.92620 1.25957 0.97565 1.01589 0.94444 1.70084 1.04070 1.31472 1.51341 0.85359 0.78315 0.79078 0.78064 1.19045 1.19966 1.19954 0.86315 0.90326 0.86328 0.80962 0.76354 0.76018 0.83142 0.85058 0.91812 0.91822 0.93057 0.93052 0.98005 0.97999 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 8.93 71.24 0.64 -2.09 16 2 C 0.38 10.65 7.21 27.93 0.20 10.85 16 3 O -0.50 -19.80 15.88 17.93 0.28 -19.51 16 4 C -0.19 -5.01 5.88 -20.09 -0.12 -5.13 16 5 C -0.11 -1.82 9.30 22.72 0.21 -1.61 16 6 C 0.17 2.68 6.75 38.09 0.26 2.94 16 7 N -0.87 -6.61 9.10 -51.38 -0.47 -7.08 16 8 C -0.12 -2.39 9.87 22.45 0.22 -2.17 16 9 C -0.19 -5.18 9.02 22.32 0.20 -4.97 16 10 C 0.10 3.18 6.70 22.89 0.15 3.33 16 11 O -0.32 -12.99 8.20 -69.08 -0.57 -13.55 16 12 C 0.07 2.77 4.74 71.99 0.34 3.11 16 13 C -0.09 -4.51 5.52 30.60 0.17 -4.34 16 14 C 0.03 1.78 4.97 29.85 0.15 1.92 16 15 C -0.55 -32.95 9.11 25.60 0.23 -32.72 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 17 C 0.00 0.15 5.46 84.65 0.46 0.61 16 18 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 19 Si 0.97 45.83 29.54 68.60 2.03 47.86 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 H 0.12 1.05 8.08 -2.39 -0.02 1.03 16 24 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 25 H 0.12 1.05 8.09 -2.38 -0.02 1.03 16 26 H 0.17 1.42 7.05 -2.91 -0.02 1.40 16 27 H 0.41 1.91 8.84 -92.71 -0.82 1.09 16 28 H 0.41 1.26 8.84 -92.71 -0.82 0.44 16 29 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 30 H 0.13 3.60 6.29 -2.91 -0.02 3.58 16 31 H 0.06 2.42 7.66 -2.39 -0.02 2.40 16 32 H 0.06 2.41 7.66 -2.39 -0.02 2.39 16 33 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 36 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -79.40 318.10 4.13 -75.26 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -0.55 Total: 4.40 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 3.12 Total: -30.26 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.18 Total: -64.20 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.28 Total: -33.07 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -79.40 4.13 -75.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164992316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.769 kcal (2) G-P(sol) polarization free energy of solvation -79.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds