Wall clock time and date at job start Mon Mar 30 2020 06:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00116 * 2 1 4 4 C 1.52995 * 109.46994 * 59.99531 * 3 2 1 5 5 C 1.53005 * 109.46624 * 299.99643 * 3 2 1 6 6 C 1.50697 * 109.47226 * 180.02562 * 3 2 1 7 7 O 1.21286 * 120.00126 * 359.97438 * 6 3 2 8 8 N 1.34772 * 119.99690 * 180.02562 * 6 3 2 9 9 C 1.39244 * 119.99817 * 184.28848 * 8 6 3 10 10 C 1.39478 * 119.83341 * 324.71008 * 9 8 6 11 11 C 1.36369 * 120.16933 * 180.30093 * 10 9 8 12 12 C 1.40878 * 119.82664 * 359.47210 * 11 10 9 13 13 C 1.41154 * 120.16246 * 180.25425 * 12 11 10 14 14 H 1.07997 * 119.99871 * 215.01640 * 13 12 11 15 15 C 1.39903 * 119.99999 * 35.01500 * 13 12 11 16 16 N 1.30866 * 120.00281 * 355.54638 * 15 13 12 17 17 Si 1.86806 * 119.99885 * 175.54077 * 15 13 12 18 18 H 1.48499 * 109.46901 * 90.00210 * 17 15 13 19 19 H 1.48498 * 109.47201 * 209.99931 * 17 15 13 20 20 H 1.48500 * 109.47104 * 330.00363 * 17 15 13 21 21 C 1.40869 * 119.67117 * 0.52026 * 12 11 10 22 22 C 1.36378 * 119.82737 * 359.73411 * 21 12 11 23 23 H 1.09003 * 109.46772 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47132 * 300.00095 * 1 2 3 25 25 H 1.08997 * 109.47224 * 60.00568 * 1 2 3 26 26 H 1.08999 * 109.46984 * 180.02562 * 4 3 2 27 27 H 1.09003 * 109.47264 * 300.00479 * 4 3 2 28 28 H 1.08994 * 109.47375 * 60.00461 * 4 3 2 29 29 H 1.08999 * 109.47010 * 300.00323 * 5 3 2 30 30 H 1.09003 * 109.47000 * 59.99908 * 5 3 2 31 31 H 1.08999 * 109.47020 * 179.97438 * 5 3 2 32 32 H 0.96997 * 120.00558 * 4.28244 * 8 6 3 33 33 H 1.08005 * 119.91557 * 0.02562 * 10 9 8 34 34 H 1.07997 * 120.08648 * 179.69679 * 11 10 9 35 35 H 0.97006 * 120.00401 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.08355 * 179.70698 * 21 12 11 37 37 H 1.08005 * 119.91166 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5588 2.0647 -1.2494 6 6 3.5125 1.1865 -0.0006 7 8 4.0342 0.0916 -0.0006 8 7 4.2764 2.2969 -0.0002 9 6 5.6617 2.1889 -0.0910 10 6 6.3162 1.1214 0.5233 11 6 7.6732 1.0123 0.4439 12 6 8.4130 1.9753 -0.2702 13 6 9.8174 1.8664 -0.3613 14 1 10.4286 2.7566 -0.3692 15 6 10.4174 0.6051 -0.4415 16 7 9.6852 -0.4753 -0.3443 17 14 12.2637 0.4631 -0.6875 18 1 12.9378 0.4251 0.6352 19 1 12.5692 -0.7834 -1.4346 20 1 12.7520 1.6346 -1.4584 21 6 7.7448 3.0506 -0.8880 22 6 6.3877 3.1491 -0.7955 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 2.0017 3.0607 1.2489 27 1 0.4721 2.1508 1.2491 28 1 1.8803 1.5240 2.1391 29 1 1.8804 1.5236 -2.1393 30 1 0.4722 2.1507 -1.2494 31 1 2.0018 3.0606 -1.2492 32 1 3.8612 3.1712 0.0632 33 1 5.7472 0.3816 1.0669 34 1 8.1791 0.1878 0.9242 35 1 10.1013 -1.3498 -0.3995 36 1 8.3058 3.7952 -1.4331 37 1 5.8741 3.9732 -1.2683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170968922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:17 Heat of formation + Delta-G solvation = -57.760318 kcal Electronic energy + Delta-G solvation = -19653.768407 eV Core-core repulsion = 16589.183009 eV Total energy + Delta-G solvation = -3064.585398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21337 -38.26213 -36.90102 -34.46981 -33.28665 -32.16812 -29.48913 -28.81129 -27.64657 -27.26321 -25.10587 -22.82255 -21.29470 -20.71261 -19.20448 -17.63919 -17.25701 -16.46323 -15.75305 -15.46487 -15.16833 -14.69056 -14.49750 -13.91424 -13.62179 -13.27441 -12.88183 -12.64915 -12.57164 -12.44629 -12.21988 -12.00786 -11.72018 -11.54758 -11.43842 -11.14773 -11.08181 -10.88424 -10.47802 -9.89118 -9.84397 -9.72992 -9.35135 -8.94090 -8.68485 -7.50315 -6.87068 -6.56741 -4.31019 2.58738 3.01909 3.11106 3.12565 3.15146 3.17658 3.40846 4.00828 4.07626 4.58355 4.73270 4.83594 4.89880 5.16061 5.17253 5.31197 5.33941 5.50039 5.57085 5.62728 5.70016 5.86051 6.01790 6.14317 6.40653 6.80259 6.95302 7.05715 7.09581 7.23724 7.31724 7.65977 7.70509 7.99377 8.11675 8.21796 8.35854 8.69461 8.78527 8.95814 9.03745 10.34245 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.042484 B = 0.004230 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.917196 B = 6618.556301 C = 7006.774387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.354 6.354 3 C 0.097 3.903 4 C -0.177 4.177 5 C -0.175 4.175 6 C 0.511 3.489 7 O -0.504 6.504 8 N -0.649 5.649 9 C 0.005 3.995 10 C -0.093 4.093 11 C -0.144 4.144 12 C 0.101 3.899 13 C -0.464 4.464 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.807 5.807 17 Si 0.915 3.085 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.204 4.204 22 C -0.113 4.113 23 H 0.087 0.913 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.393 0.607 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.278 0.722 36 H 0.097 0.903 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.750 5.453 0.977 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.272 6.272 3 C 0.054 3.946 4 C -0.234 4.234 5 C -0.233 4.233 6 C 0.296 3.704 7 O -0.378 6.378 8 N -0.294 5.294 9 C -0.087 4.087 10 C -0.113 4.113 11 C -0.164 4.164 12 C 0.098 3.902 13 C -0.495 4.495 14 H 0.094 0.906 15 C -0.146 4.146 16 N -0.434 5.434 17 Si 0.740 3.260 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.224 4.224 22 C -0.133 4.133 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.227 0.773 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.256 4.200 0.956 14.892 hybrid contribution 0.283 0.510 -0.266 0.641 sum -13.973 4.710 0.690 14.762 Atomic orbital electron populations 1.22856 0.81504 1.02923 1.00038 1.88133 1.19081 1.25010 1.94931 1.21375 0.92199 0.85031 0.96012 1.22413 1.02289 1.00917 0.97808 1.22397 1.02153 1.00953 0.97805 1.19888 0.87340 0.85113 0.78080 1.90735 1.73682 1.26451 1.46918 1.42865 1.05930 1.07858 1.72737 1.17266 0.80078 1.01940 1.09371 1.20659 0.94925 0.96651 0.99107 1.21310 0.92001 1.01857 1.01216 1.17728 0.93650 0.90465 0.88346 1.19479 0.91977 0.92886 1.45112 0.90641 1.25893 1.00355 0.95455 0.92925 1.69788 1.37079 0.98937 1.37575 0.86207 0.82168 0.78545 0.79088 1.19533 1.20302 1.18771 1.20684 0.92785 1.02727 1.06208 1.20061 0.94640 0.98523 1.00060 0.89412 0.93761 0.93747 0.90841 0.91180 0.90961 0.90971 0.91230 0.90824 0.77313 0.87466 0.85186 0.91044 0.88514 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.21 101.05 1.03 1.26 16 2 O -0.35 -5.43 9.88 -55.14 -0.54 -5.97 16 3 C 0.10 1.34 0.98 -91.77 -0.09 1.25 16 4 C -0.18 -1.84 8.15 37.16 0.30 -1.54 16 5 C -0.18 -1.89 8.15 37.16 0.30 -1.59 16 6 C 0.51 9.63 6.39 -10.99 -0.07 9.56 16 7 O -0.50 -12.20 13.92 -14.36 -0.20 -12.40 16 8 N -0.65 -11.55 5.08 -9.74 -0.05 -11.60 16 9 C 0.01 0.12 6.31 -83.57 -0.53 -0.41 16 10 C -0.09 -2.38 8.61 -39.79 -0.34 -2.73 16 11 C -0.14 -3.93 8.61 -39.26 -0.34 -4.27 16 12 C 0.10 2.73 5.55 -106.80 -0.59 2.13 16 13 C -0.46 -12.50 9.02 -37.85 -0.34 -12.84 16 14 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 15 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 16 N -0.81 -21.88 10.61 55.55 0.59 -21.29 16 17 Si 0.91 19.31 29.56 -169.99 -5.03 14.29 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 C -0.20 -4.95 9.74 -39.26 -0.38 -5.34 16 22 C -0.11 -2.46 9.90 -39.79 -0.39 -2.86 16 23 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.36 6.42 -51.93 -0.33 0.03 16 25 H 0.04 0.37 6.42 -51.93 -0.33 0.04 16 26 H 0.07 0.64 7.47 -51.93 -0.39 0.25 16 27 H 0.07 0.56 6.54 -51.93 -0.34 0.22 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.57 6.54 -51.93 -0.34 0.23 16 31 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 32 H 0.39 5.31 7.67 -40.82 -0.31 5.00 16 33 H 0.11 2.78 6.22 -52.48 -0.33 2.46 16 34 H 0.13 3.72 6.15 -52.49 -0.32 3.39 16 35 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 36 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 37 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -32.51 305.20 -6.92 -39.43 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -4.75 Total: 8.60 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.54 Total: -15.65 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.54 Total: -32.90 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.74 Total: -18.37 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.51 -6.92 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170968922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.327 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds