Wall clock time and date at job start Mon Mar 30 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00116 * 2 1 4 4 C 1.52995 * 109.46994 * 59.99531 * 3 2 1 5 5 C 1.53005 * 109.46624 * 299.99643 * 3 2 1 6 6 C 1.50697 * 109.47226 * 180.02562 * 3 2 1 7 7 O 1.21286 * 120.00126 * 359.97438 * 6 3 2 8 8 N 1.34772 * 119.99690 * 180.02562 * 6 3 2 9 9 C 1.39244 * 119.99817 * 184.28848 * 8 6 3 10 10 C 1.39478 * 119.83341 * 324.71008 * 9 8 6 11 11 C 1.36369 * 120.16933 * 180.30093 * 10 9 8 12 12 C 1.40878 * 119.82664 * 359.47210 * 11 10 9 13 13 C 1.41154 * 120.16246 * 180.25425 * 12 11 10 14 14 H 1.07997 * 119.99871 * 215.01640 * 13 12 11 15 15 C 1.39903 * 119.99999 * 35.01500 * 13 12 11 16 16 N 1.30866 * 120.00281 * 355.54638 * 15 13 12 17 17 Si 1.86806 * 119.99885 * 175.54077 * 15 13 12 18 18 H 1.48499 * 109.46901 * 90.00210 * 17 15 13 19 19 H 1.48498 * 109.47201 * 209.99931 * 17 15 13 20 20 H 1.48500 * 109.47104 * 330.00363 * 17 15 13 21 21 C 1.40869 * 119.67117 * 0.52026 * 12 11 10 22 22 C 1.36378 * 119.82737 * 359.73411 * 21 12 11 23 23 H 1.09003 * 109.46772 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47132 * 300.00095 * 1 2 3 25 25 H 1.08997 * 109.47224 * 60.00568 * 1 2 3 26 26 H 1.08999 * 109.46984 * 180.02562 * 4 3 2 27 27 H 1.09003 * 109.47264 * 300.00479 * 4 3 2 28 28 H 1.08994 * 109.47375 * 60.00461 * 4 3 2 29 29 H 1.08999 * 109.47010 * 300.00323 * 5 3 2 30 30 H 1.09003 * 109.47000 * 59.99908 * 5 3 2 31 31 H 1.08999 * 109.47020 * 179.97438 * 5 3 2 32 32 H 0.96997 * 120.00558 * 4.28244 * 8 6 3 33 33 H 1.08005 * 119.91557 * 0.02562 * 10 9 8 34 34 H 1.07997 * 120.08648 * 179.69679 * 11 10 9 35 35 H 0.97006 * 120.00401 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.08355 * 179.70698 * 21 12 11 37 37 H 1.08005 * 119.91166 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5588 2.0647 -1.2494 6 6 3.5125 1.1865 -0.0006 7 8 4.0342 0.0916 -0.0006 8 7 4.2764 2.2969 -0.0002 9 6 5.6617 2.1889 -0.0910 10 6 6.3162 1.1214 0.5233 11 6 7.6732 1.0123 0.4439 12 6 8.4130 1.9753 -0.2702 13 6 9.8174 1.8664 -0.3613 14 1 10.4286 2.7566 -0.3692 15 6 10.4174 0.6051 -0.4415 16 7 9.6852 -0.4753 -0.3443 17 14 12.2637 0.4631 -0.6875 18 1 12.9378 0.4251 0.6352 19 1 12.5692 -0.7834 -1.4346 20 1 12.7520 1.6346 -1.4584 21 6 7.7448 3.0506 -0.8880 22 6 6.3877 3.1491 -0.7955 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 2.0017 3.0607 1.2489 27 1 0.4721 2.1508 1.2491 28 1 1.8803 1.5240 2.1391 29 1 1.8804 1.5236 -2.1393 30 1 0.4722 2.1507 -1.2494 31 1 2.0018 3.0606 -1.2492 32 1 3.8612 3.1712 0.0632 33 1 5.7472 0.3816 1.0669 34 1 8.1791 0.1878 0.9242 35 1 10.1013 -1.3498 -0.3995 36 1 8.3058 3.7952 -1.4331 37 1 5.8741 3.9732 -1.2683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170968922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:16 Heat of formation + Delta-G solvation = -79.211385 kcal Electronic energy + Delta-G solvation = -19654.698595 eV Core-core repulsion = 16589.183009 eV Total energy + Delta-G solvation = -3065.515586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62876 -39.69623 -38.53557 -36.22855 -34.94152 -33.45137 -31.43619 -30.65765 -28.44736 -28.10744 -26.92620 -24.25646 -23.16144 -22.37739 -20.65760 -19.25242 -19.00351 -17.79382 -17.23296 -16.90776 -16.49173 -16.00582 -15.84595 -15.70120 -14.89071 -14.67465 -14.47985 -14.03648 -13.92130 -13.59681 -13.53759 -13.39981 -13.19459 -12.96189 -12.85930 -12.67706 -12.40798 -12.30601 -12.02925 -11.76069 -11.67455 -11.15376 -10.71118 -10.63655 -10.40730 -9.46378 -8.76732 -8.49811 -6.33700 0.78563 1.12386 1.38853 1.43553 1.54004 1.71936 1.97607 2.23866 2.81102 3.03382 3.58532 3.68525 3.74946 3.90574 4.42036 4.43544 4.46828 4.48260 4.56736 4.61504 4.75344 4.80915 4.84264 4.97500 5.10420 5.11509 5.15995 5.21188 5.33301 5.40794 5.70363 5.84083 6.06448 6.13262 6.16710 6.35171 6.69025 6.70593 6.95494 7.01529 7.36137 8.43229 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.042484 B = 0.004230 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.917196 B = 6618.556301 C = 7006.774387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.399 6.399 3 C 0.102 3.898 4 C -0.173 4.173 5 C -0.172 4.172 6 C 0.503 3.497 7 O -0.568 6.568 8 N -0.634 5.634 9 C 0.018 3.982 10 C -0.111 4.111 11 C -0.170 4.170 12 C 0.067 3.933 13 C -0.496 4.496 14 H 0.082 0.918 15 C 0.022 3.978 16 N -0.849 5.849 17 Si 0.992 3.008 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.254 1.254 21 C -0.208 4.208 22 C -0.103 4.103 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.419 0.581 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.282 0.718 36 H 0.116 0.884 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.604 8.107 0.161 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.319 6.319 3 C 0.059 3.941 4 C -0.230 4.230 5 C -0.229 4.229 6 C 0.291 3.709 7 O -0.446 6.446 8 N -0.281 5.281 9 C -0.075 4.075 10 C -0.131 4.131 11 C -0.190 4.190 12 C 0.065 3.935 13 C -0.527 4.527 14 H 0.100 0.900 15 C -0.190 4.190 16 N -0.477 5.477 17 Si 0.812 3.188 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.177 1.177 21 C -0.228 4.228 22 C -0.123 4.123 23 H 0.110 0.890 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.258 0.742 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.166 6.916 0.148 17.584 hybrid contribution 0.651 -0.308 0.007 0.720 sum -15.515 6.608 0.155 16.865 Atomic orbital electron populations 1.23122 0.78757 1.04057 1.01975 1.88074 1.22114 1.26306 1.95393 1.21408 0.87900 0.85507 0.99244 1.22441 1.04570 1.00998 0.94994 1.22428 1.04471 1.01024 0.94976 1.21071 0.89972 0.84039 0.75855 1.90713 1.75423 1.28925 1.49559 1.42728 1.04014 1.09333 1.72044 1.17352 0.82416 1.00424 1.07324 1.20652 0.94400 0.97852 1.00169 1.21165 0.92894 1.02128 1.02800 1.18069 0.94391 0.91666 0.89410 1.19793 0.92435 0.93783 1.46714 0.89995 1.26880 1.05466 0.94651 0.91967 1.69923 1.39288 0.99576 1.38893 0.85056 0.75628 0.78751 0.79318 1.18666 1.19867 1.17710 1.20981 0.94133 1.02022 1.05652 1.20453 0.93878 0.99189 0.98799 0.88976 0.91663 0.91731 0.88661 0.87830 0.92833 0.93030 0.87858 0.88639 0.74221 0.89109 0.87937 0.90779 0.86611 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.21 113.37 1.16 1.44 16 2 O -0.40 -11.85 9.88 -129.94 -1.28 -13.14 16 3 C 0.10 2.59 0.98 -11.54 -0.01 2.58 16 4 C -0.17 -3.00 8.15 71.98 0.59 -2.41 16 5 C -0.17 -3.04 8.15 71.98 0.59 -2.46 16 6 C 0.50 18.73 6.39 87.66 0.56 19.29 16 7 O -0.57 -28.63 13.92 15.99 0.22 -28.40 16 8 N -0.63 -21.41 5.08 -303.11 -1.54 -22.95 16 9 C 0.02 0.80 6.31 38.56 0.24 1.05 16 10 C -0.11 -5.90 8.61 22.13 0.19 -5.71 16 11 C -0.17 -9.83 8.61 22.48 0.19 -9.64 16 12 C 0.07 3.74 5.55 -21.27 -0.12 3.63 16 13 C -0.50 -27.54 9.02 23.39 0.21 -27.33 16 14 H 0.08 4.26 7.85 -2.91 -0.02 4.23 16 15 C 0.02 1.15 5.42 85.24 0.46 1.61 16 16 N -0.85 -48.47 10.61 21.82 0.23 -48.24 16 17 Si 0.99 40.32 29.56 68.60 2.03 42.35 16 18 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 21 C -0.21 -9.94 9.74 22.48 0.22 -9.72 16 22 C -0.10 -4.28 9.90 22.13 0.22 -4.06 16 23 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 0.83 6.42 -2.39 -0.02 0.81 16 25 H 0.06 0.83 6.42 -2.39 -0.02 0.82 16 26 H 0.09 1.22 7.47 -2.39 -0.02 1.20 16 27 H 0.10 1.13 6.54 -2.39 -0.02 1.12 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.16 6.54 -2.39 -0.02 1.14 16 31 H 0.09 1.26 7.67 -2.39 -0.02 1.24 16 32 H 0.42 9.69 7.67 -92.71 -0.71 8.98 16 33 H 0.09 5.07 6.22 -2.91 -0.02 5.05 16 34 H 0.10 6.38 6.15 -2.91 -0.02 6.36 16 35 H 0.28 14.78 8.30 -92.70 -0.77 14.01 16 36 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 37 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -77.32 305.20 4.53 -72.79 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.38 Total: 29.34 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 4.50 Total: -31.74 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -1.31 Total: -71.19 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -1.06 Total: -41.54 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -77.32 4.53 -72.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170968922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.424 kcal (2) G-P(sol) polarization free energy of solvation -77.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds