Wall clock time and date at job start Mon Mar 30 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46848 * 2 1 4 4 C 1.38367 * 119.45206 * 125.27983 * 3 2 1 5 5 C 1.38341 * 119.30527 * 180.22745 * 4 3 2 6 6 C 1.40081 * 118.28446 * 359.50534 * 5 4 3 7 7 C 1.47720 * 120.56441 * 180.22978 * 6 5 4 8 8 O 1.21471 * 119.99716 * 173.78359 * 7 6 5 9 9 O 1.34705 * 120.00001 * 353.77893 * 7 6 5 10 10 C 1.45199 * 116.99907 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.47055 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00444 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99945 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00093 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00378 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47036 * 60.00264 * 16 14 12 18 18 H 1.48495 * 109.47498 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47043 * 300.00643 * 16 14 12 20 20 C 1.39574 * 118.87026 * 0.24603 * 6 5 4 21 21 C 1.50702 * 119.72105 * 179.97438 * 20 6 5 22 22 N 1.31682 * 120.56215 * 0.02562 * 20 6 5 23 23 H 1.08993 * 109.47643 * 59.99989 * 1 2 3 24 24 H 1.08999 * 109.46951 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47381 * 299.99444 * 1 2 3 26 26 H 1.08997 * 109.47015 * 239.99939 * 2 1 3 27 27 H 1.09001 * 109.47036 * 120.00184 * 2 1 3 28 28 H 1.07999 * 120.34522 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.85697 * 179.77594 * 5 4 3 30 30 H 1.08997 * 109.47080 * 299.99578 * 10 9 7 31 31 H 1.08998 * 109.47297 * 59.99985 * 10 9 7 32 32 H 1.08997 * 109.46522 * 299.99540 * 11 10 9 33 33 H 1.08998 * 109.47390 * 59.99663 * 11 10 9 34 34 H 0.96999 * 120.00643 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.47164 * 83.43764 * 21 20 6 36 36 H 1.09003 * 109.47272 * 203.44183 * 21 20 6 37 37 H 1.09009 * 109.46864 * 323.43602 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9151 1.8304 0.9836 5 6 3.3706 3.1367 0.9835 6 6 2.9227 3.9957 -0.0284 7 6 3.3808 5.3991 -0.0796 8 8 3.0773 6.1030 -1.0219 9 8 4.1351 5.8983 0.9186 10 6 4.5488 7.2852 0.8020 11 6 5.3919 7.6700 2.0195 12 6 5.8217 9.1092 1.8982 13 1 5.5239 9.6912 1.0385 14 6 6.5953 9.6832 2.8847 15 7 6.9585 8.9744 3.9313 16 14 7.1288 11.4670 2.7340 17 1 5.9284 12.3387 2.6669 18 1 7.9469 11.8406 3.9157 19 1 7.9356 11.6398 1.4993 20 6 2.0359 3.5031 -0.9870 21 6 1.5414 4.4107 -2.0837 22 7 1.6269 2.2523 -0.9408 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.2426 1.1383 1.7453 29 1 4.0572 3.4840 1.7413 30 1 5.1408 7.4128 -0.1043 31 1 3.6673 7.9244 0.7533 32 1 4.8002 7.5423 2.9260 33 1 6.2734 7.0307 2.0679 34 1 7.5024 9.3782 4.6256 35 1 2.2743 4.4391 -2.8900 36 1 0.5934 4.0338 -2.4675 37 1 1.3987 5.4159 -1.6868 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183552076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:01 Heat of formation + Delta-G solvation = -73.406140 kcal Electronic energy + Delta-G solvation = -18891.355487 eV Core-core repulsion = 15826.091635 eV Total energy + Delta-G solvation = -3065.263852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89454 -39.46358 -36.30353 -34.64388 -33.47045 -33.02184 -31.10197 -30.24511 -27.98959 -25.66470 -24.74464 -22.49671 -22.09790 -21.16747 -20.65093 -17.76481 -16.80935 -16.44689 -16.07933 -15.84504 -15.71161 -14.84785 -14.59160 -14.20734 -14.10758 -13.62837 -13.18218 -13.00996 -12.74831 -12.67125 -12.37001 -12.13013 -11.99234 -11.60555 -11.36163 -11.25585 -11.09186 -10.76952 -10.71070 -10.15974 -9.95697 -9.81300 -9.69134 -9.49210 -9.33213 -9.01331 -8.46666 -6.13012 -4.17599 0.47647 1.08284 2.69660 3.04644 3.28554 3.32690 3.36246 3.63573 3.94733 4.36820 4.39124 4.61612 4.72272 4.85414 4.99090 5.13792 5.17319 5.23621 5.38625 5.49203 5.58975 5.66232 5.72532 5.74961 5.88109 5.96599 6.02735 6.05504 6.07795 6.18814 6.48480 6.59341 6.92527 7.51689 7.58318 7.75555 7.83256 8.11855 8.21583 8.87664 9.46954 10.98471 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041451 B = 0.003415 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.338375 B = 8198.067659 C = 8767.246256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C 0.159 3.841 4 C -0.193 4.193 5 C -0.011 4.011 6 C -0.182 4.182 7 C 0.505 3.495 8 O -0.506 6.506 9 O -0.353 6.353 10 C 0.076 3.924 11 C 0.025 3.975 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.196 3.804 21 C -0.111 4.111 22 N -0.490 5.490 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.142 0.858 29 H 0.154 0.846 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.319 -17.184 -6.675 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C 0.021 3.979 4 C -0.213 4.213 5 C -0.036 4.036 6 C -0.185 4.185 7 C 0.350 3.650 8 O -0.397 6.397 9 O -0.269 6.269 10 C 0.004 3.996 11 C -0.012 4.012 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.727 3.273 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.058 3.942 21 C -0.168 4.168 22 N -0.201 5.201 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.160 0.840 29 H 0.172 0.828 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.847 -17.220 -7.381 21.649 hybrid contribution 1.063 1.369 0.688 1.865 sum -9.784 -15.851 -6.693 19.793 Atomic orbital electron populations 1.21674 0.93883 1.01779 1.02860 1.20554 0.97238 0.90129 1.03393 1.21558 0.91040 0.96017 0.89260 1.21967 1.00906 0.96949 1.01495 1.22034 0.94310 0.92268 0.94994 1.20112 1.04715 0.93142 1.00532 1.20810 0.76265 0.87184 0.80757 1.90752 1.54153 1.60799 1.34022 1.86562 1.62153 1.33238 1.44926 1.23695 0.98798 0.74530 1.02592 1.19169 0.94491 0.96531 0.91014 1.20935 1.33145 0.95696 1.06798 0.92260 1.24980 0.95700 0.98385 0.95044 1.69958 1.36632 1.36657 1.09629 0.86523 0.78757 0.84354 0.77619 1.20036 1.21109 1.20043 1.21498 0.89119 0.90482 0.93089 1.21083 1.01327 0.98823 0.95575 1.67448 1.25408 1.02912 1.24295 0.91448 0.92246 0.92804 0.89685 0.90040 0.84018 0.82841 0.92125 0.92118 0.95347 0.95357 0.92622 0.89731 0.91088 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.77 37.16 0.36 -0.72 16 2 C -0.08 -0.58 6.33 -27.88 -0.18 -0.76 16 3 C 0.16 1.75 6.18 -82.50 -0.51 1.24 16 4 C -0.19 -2.05 9.69 -39.50 -0.38 -2.43 16 5 C -0.01 -0.14 9.74 -38.85 -0.38 -0.51 16 6 C -0.18 -2.75 5.89 -104.83 -0.62 -3.36 16 7 C 0.51 9.10 7.83 34.60 0.27 9.37 16 8 O -0.51 -9.70 13.17 -19.24 -0.25 -9.95 16 9 O -0.35 -7.01 9.57 -40.51 -0.39 -7.40 16 10 C 0.08 1.68 5.41 37.16 0.20 1.88 16 11 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 12 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 16 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.20 2.78 6.82 -82.16 -0.56 2.22 16 21 C -0.11 -1.44 8.88 36.01 0.32 -1.12 16 22 N -0.49 -6.41 9.76 -5.40 -0.05 -6.47 16 23 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.46 7.86 -51.93 -0.41 0.05 16 28 H 0.14 1.06 7.94 -52.49 -0.42 0.65 16 29 H 0.15 1.87 7.72 -52.49 -0.41 1.47 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.46 5.86 -51.92 -0.30 1.16 16 LS Contribution 319.74 15.07 4.82 4.82 Total: -1.00 -30.80 319.74 -7.48 -38.28 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -5.29 Total: -2.97 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.03 Total: -7.11 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.68 Total: -31.93 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.64 Total: -17.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.80 -7.48 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183552076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.123 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds