Wall clock time and date at job start Mon Mar 30 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46848 * 2 1 4 4 C 1.38367 * 119.45206 * 125.27983 * 3 2 1 5 5 C 1.38341 * 119.30527 * 180.22745 * 4 3 2 6 6 C 1.40081 * 118.28446 * 359.50534 * 5 4 3 7 7 C 1.47720 * 120.56441 * 180.22978 * 6 5 4 8 8 O 1.21471 * 119.99716 * 173.78359 * 7 6 5 9 9 O 1.34705 * 120.00001 * 353.77893 * 7 6 5 10 10 C 1.45199 * 116.99907 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.47055 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00444 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99945 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00093 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00378 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47036 * 60.00264 * 16 14 12 18 18 H 1.48495 * 109.47498 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47043 * 300.00643 * 16 14 12 20 20 C 1.39574 * 118.87026 * 0.24603 * 6 5 4 21 21 C 1.50702 * 119.72105 * 179.97438 * 20 6 5 22 22 N 1.31682 * 120.56215 * 0.02562 * 20 6 5 23 23 H 1.08993 * 109.47643 * 59.99989 * 1 2 3 24 24 H 1.08999 * 109.46951 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47381 * 299.99444 * 1 2 3 26 26 H 1.08997 * 109.47015 * 239.99939 * 2 1 3 27 27 H 1.09001 * 109.47036 * 120.00184 * 2 1 3 28 28 H 1.07999 * 120.34522 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.85697 * 179.77594 * 5 4 3 30 30 H 1.08997 * 109.47080 * 299.99578 * 10 9 7 31 31 H 1.08998 * 109.47297 * 59.99985 * 10 9 7 32 32 H 1.08997 * 109.46522 * 299.99540 * 11 10 9 33 33 H 1.08998 * 109.47390 * 59.99663 * 11 10 9 34 34 H 0.96999 * 120.00643 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.47164 * 83.43764 * 21 20 6 36 36 H 1.09003 * 109.47272 * 203.44183 * 21 20 6 37 37 H 1.09009 * 109.46864 * 323.43602 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9151 1.8304 0.9836 5 6 3.3706 3.1367 0.9835 6 6 2.9227 3.9957 -0.0284 7 6 3.3808 5.3991 -0.0796 8 8 3.0773 6.1030 -1.0219 9 8 4.1351 5.8983 0.9186 10 6 4.5488 7.2852 0.8020 11 6 5.3919 7.6700 2.0195 12 6 5.8217 9.1092 1.8982 13 1 5.5239 9.6912 1.0385 14 6 6.5953 9.6832 2.8847 15 7 6.9585 8.9744 3.9313 16 14 7.1288 11.4670 2.7340 17 1 5.9284 12.3387 2.6669 18 1 7.9469 11.8406 3.9157 19 1 7.9356 11.6398 1.4993 20 6 2.0359 3.5031 -0.9870 21 6 1.5414 4.4107 -2.0837 22 7 1.6269 2.2523 -0.9408 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.2426 1.1383 1.7453 29 1 4.0572 3.4840 1.7413 30 1 5.1408 7.4128 -0.1043 31 1 3.6673 7.9244 0.7533 32 1 4.8002 7.5423 2.9260 33 1 6.2734 7.0307 2.0679 34 1 7.5024 9.3782 4.6256 35 1 2.2743 4.4391 -2.8900 36 1 0.5934 4.0338 -2.4675 37 1 1.3987 5.4159 -1.6868 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183552076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:01 Heat of formation + Delta-G solvation = -90.250743 kcal Electronic energy + Delta-G solvation = -18892.085924 eV Core-core repulsion = 15826.091635 eV Total energy + Delta-G solvation = -3065.994289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.05202 -40.78239 -37.83746 -35.51830 -35.46963 -34.11069 -32.40080 -31.80879 -29.05992 -27.21492 -26.08529 -23.76272 -23.05671 -22.72817 -22.00926 -19.21624 -18.35152 -18.03862 -17.63397 -17.12305 -16.67682 -16.52826 -15.89016 -15.23105 -15.08332 -14.82310 -14.49392 -14.38346 -14.20174 -13.83321 -13.63325 -13.26155 -13.12019 -12.97642 -12.78718 -12.60232 -12.57157 -12.28880 -11.95811 -11.80038 -11.53010 -11.49091 -11.31608 -10.96735 -10.61741 -10.59068 -9.99183 -8.28058 -6.41309 -0.59435 0.10899 1.39109 1.40390 1.44224 1.51209 1.62036 2.39222 2.60181 3.05045 3.06479 3.48665 3.59488 3.66774 3.92194 4.16234 4.20878 4.25709 4.38775 4.46395 4.49975 4.63598 4.68211 4.68289 4.76119 4.95429 5.01951 5.06480 5.09615 5.19555 5.29201 5.40507 5.44904 5.48042 5.60969 5.72370 6.05011 6.62447 6.72309 6.78258 7.28485 8.84366 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041451 B = 0.003415 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.338375 B = 8198.067659 C = 8767.246256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 C 0.159 3.841 4 C -0.182 4.182 5 C -0.017 4.017 6 C -0.206 4.206 7 C 0.504 3.496 8 O -0.523 6.523 9 O -0.359 6.359 10 C 0.092 3.908 11 C 0.032 3.968 12 C -0.552 4.552 13 H 0.065 0.935 14 C 0.007 3.993 15 N -0.927 5.927 16 Si 0.973 3.027 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.266 1.266 20 C 0.189 3.811 21 C -0.107 4.107 22 N -0.500 5.500 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.180 0.820 29 H 0.156 0.844 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.268 0.732 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 -18.464 -6.810 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C 0.022 3.978 4 C -0.201 4.201 5 C -0.042 4.042 6 C -0.210 4.210 7 C 0.350 3.650 8 O -0.415 6.415 9 O -0.276 6.276 10 C 0.019 3.981 11 C -0.005 4.005 12 C -0.589 4.589 13 H 0.084 0.916 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.796 3.204 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.191 1.191 20 C 0.051 3.949 21 C -0.164 4.164 22 N -0.211 5.211 23 H 0.069 0.931 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.129 0.871 28 H 0.198 0.802 29 H 0.173 0.827 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.025 0.975 33 H 0.026 0.974 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.223 -18.514 -7.531 22.923 hybrid contribution 1.113 1.588 0.738 2.075 sum -10.111 -16.926 -6.794 20.854 Atomic orbital electron populations 1.21662 0.93796 1.02850 1.01756 1.20728 0.97188 0.87933 1.05308 1.22277 0.90071 0.97225 0.88243 1.22357 0.99664 0.96276 1.01820 1.22187 0.94436 0.93177 0.94446 1.20026 1.06664 0.91662 1.02611 1.21347 0.75438 0.88308 0.79880 1.90740 1.54725 1.61562 1.34432 1.86538 1.63040 1.31899 1.46100 1.23223 0.98261 0.76008 1.00629 1.18972 0.93877 0.95864 0.91802 1.21345 1.33587 0.96725 1.07280 0.91641 1.25952 0.95500 1.03264 0.94486 1.70081 1.37232 1.38803 1.10444 0.85387 0.78615 0.78401 0.77981 1.19056 1.20460 1.19059 1.21614 0.89043 0.91203 0.93077 1.21008 1.02150 0.97850 0.95345 1.67540 1.25748 1.02513 1.25299 0.93130 0.90120 0.93351 0.88690 0.87124 0.80250 0.82682 0.91967 0.91971 0.97476 0.97424 0.92298 0.89684 0.89445 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.77 71.98 0.70 -1.06 16 2 C -0.07 -0.88 6.33 29.85 0.19 -0.69 16 3 C 0.16 3.11 6.18 42.58 0.26 3.37 16 4 C -0.18 -3.35 9.69 22.33 0.22 -3.14 16 5 C -0.02 -0.43 9.74 22.74 0.22 -0.20 16 6 C -0.21 -6.25 5.89 -20.00 -0.12 -6.36 16 7 C 0.50 18.59 7.83 70.33 0.55 19.14 16 8 O -0.52 -20.56 13.17 19.93 0.26 -20.30 16 9 O -0.36 -14.70 9.57 -56.15 -0.54 -15.23 16 10 C 0.09 4.14 5.41 71.98 0.39 4.53 16 11 C 0.03 1.72 5.35 29.85 0.16 1.88 16 12 C -0.55 -31.21 9.11 25.60 0.23 -30.98 16 13 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 14 C 0.01 0.40 5.46 84.65 0.46 0.86 16 15 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 16 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 C 0.19 5.28 6.82 42.90 0.29 5.58 16 21 C -0.11 -2.78 8.88 71.24 0.63 -2.14 16 22 N -0.50 -12.40 9.76 -171.00 -1.67 -14.07 16 23 H 0.05 0.80 7.94 -2.39 -0.02 0.78 16 24 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.11 0.71 7.86 -2.39 -0.02 0.69 16 28 H 0.18 1.91 7.94 -2.91 -0.02 1.88 16 29 H 0.16 3.73 7.72 -2.91 -0.02 3.70 16 30 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.51 5.86 -2.38 -0.01 2.50 16 Total: -1.00 -66.98 319.74 5.62 -61.36 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.06 Total: 6.96 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 4.20 Total: -9.22 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.38 Total: -69.05 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.27 Total: -35.54 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.98 5.62 -61.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183552076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.892 kcal (2) G-P(sol) polarization free energy of solvation -66.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds