Wall clock time and date at job start Mon Mar 30 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34505 * 125.79105 * 2 1 4 4 C 1.41392 * 106.84069 * 179.74846 * 3 2 1 5 5 C 1.34508 * 106.83784 * 0.37719 * 4 3 2 6 6 C 1.50700 * 125.78945 * 179.89155 * 5 4 3 7 7 H 1.09000 * 109.69849 * 3.38137 * 6 5 4 8 8 C 1.53190 * 109.59214 * 123.73407 * 6 5 4 9 9 C 1.53035 * 109.34203 * 174.43708 * 8 6 5 10 10 C 1.53031 * 109.54111 * 298.62306 * 9 8 6 11 11 C 1.53194 * 109.31476 * 61.36008 * 10 9 8 12 12 N 1.46922 * 108.77489 * 305.36825 * 11 10 9 13 13 C 1.34773 * 120.62963 * 233.62313 * 12 11 10 14 14 O 1.21692 * 120.00054 * 174.93307 * 13 12 11 15 15 C 1.46377 * 120.00051 * 354.93988 * 13 12 11 16 16 H 1.07996 * 119.99965 * 9.30768 * 15 13 12 17 17 C 1.40050 * 119.99722 * 189.30923 * 15 13 12 18 18 N 1.30672 * 120.00508 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.47299 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47254 * 119.99488 * 19 17 15 22 22 H 1.48500 * 109.47409 * 239.99793 * 19 17 15 23 23 O 1.34308 * 125.78386 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47009 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47059 * 300.00255 * 1 2 3 26 26 H 1.09005 * 109.46852 * 59.99827 * 1 2 3 27 27 H 1.08001 * 126.58075 * 359.96649 * 3 2 1 28 28 H 1.08001 * 126.57833 * 180.23792 * 4 3 2 29 29 H 1.09006 * 109.49633 * 54.47048 * 8 6 5 30 30 H 1.09006 * 109.49916 * 294.41271 * 8 6 5 31 31 H 1.09001 * 109.45838 * 58.64747 * 9 8 6 32 32 H 1.08998 * 109.46026 * 178.60995 * 9 8 6 33 33 H 1.09000 * 109.49942 * 181.31819 * 10 9 8 34 34 H 1.09005 * 109.49688 * 301.37810 * 10 9 8 35 35 H 1.09000 * 109.58108 * 65.15546 * 11 10 9 36 36 H 1.08997 * 109.58820 * 185.57992 * 11 10 9 37 37 H 0.96992 * 120.00229 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6310 0.6319 0.0059 5 6 3.5814 -0.7123 0.0007 6 6 4.7705 -1.6380 0.0018 7 1 5.6895 -1.0556 0.0680 8 6 4.6790 -2.5905 1.1981 9 6 5.8118 -3.6162 1.1172 10 6 5.6675 -4.4380 -0.1657 11 6 5.7707 -3.5071 -1.3779 12 7 4.7788 -2.4326 -1.2348 13 6 3.8930 -2.1804 -2.2187 14 8 3.0183 -1.3509 -2.0519 15 6 3.9828 -2.9043 -3.4877 16 1 4.6578 -3.7417 -3.5851 17 6 3.1934 -2.5108 -4.5757 18 7 2.3764 -1.4979 -4.4577 19 14 3.3086 -3.4342 -6.1954 20 1 4.2997 -4.5330 -6.0695 21 1 1.9800 -4.0034 -6.5363 22 1 3.7371 -2.5008 -7.2679 23 8 2.2924 -1.0895 0.0005 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.9666 2.1203 -0.0005 28 1 4.5213 1.2432 0.0111 29 1 3.7189 -3.1064 1.1797 30 1 4.7685 -2.0217 2.1237 31 1 6.7708 -3.0983 1.1109 32 1 5.7632 -4.2797 1.9807 33 1 6.4610 -5.1839 -0.2111 34 1 4.6985 -4.9370 -0.1710 35 1 6.7712 -3.0771 -1.4243 36 1 5.5702 -4.0704 -2.2893 37 1 1.8300 -1.2253 -5.2113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187053766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:51 Heat of formation + Delta-G solvation = -17.605125 kcal Electronic energy + Delta-G solvation = -20979.784171 eV Core-core repulsion = 17916.940033 eV Total energy + Delta-G solvation = -3062.844138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.45931 -38.55377 -35.77086 -32.73512 -32.02978 -31.96609 -31.61168 -29.90241 -26.59940 -25.62521 -23.82269 -22.32434 -20.91613 -20.31719 -19.45337 -18.61194 -16.71561 -15.92227 -15.31902 -14.90916 -14.54479 -14.28367 -13.87145 -13.86379 -13.36557 -12.99450 -12.79836 -12.46732 -12.40297 -12.17031 -11.71400 -11.61362 -11.46652 -11.18931 -11.03075 -10.98854 -10.84490 -10.62286 -10.42333 -10.25514 -10.14180 -9.77596 -8.88823 -8.71946 -7.99874 -7.27183 -6.72991 -6.12778 -4.64936 2.86831 3.10997 3.19467 3.22979 3.62401 4.01907 4.11587 4.49018 4.59720 5.13788 5.22157 5.25948 5.55114 5.62195 5.71328 5.78040 5.80806 5.97171 5.99738 6.01398 6.07250 6.16899 6.24155 6.25909 6.31778 6.37407 6.49827 6.52867 6.75422 6.81695 6.91928 7.20834 7.44048 7.52211 7.64912 8.08415 8.28206 8.39588 9.01149 9.38702 10.54903 10.73037 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.009891 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.945795 B = 2830.187396 C = 4276.905462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.014 4.014 3 C -0.213 4.213 4 C -0.247 4.247 5 C 0.070 3.930 6 C 0.225 3.775 7 H 0.077 0.923 8 C -0.128 4.128 9 C -0.113 4.113 10 C -0.137 4.137 11 C 0.123 3.877 12 N -0.640 5.640 13 C 0.554 3.446 14 O -0.532 6.532 15 C -0.542 4.542 16 H 0.073 0.927 17 C 0.089 3.911 18 N -0.765 5.765 19 Si 0.905 3.095 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.277 1.277 23 O -0.148 6.148 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.095 0.905 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 -1.733 8.418 9.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.065 4.065 3 C -0.233 4.233 4 C -0.267 4.267 5 C 0.019 3.981 6 C 0.121 3.879 7 H 0.095 0.905 8 C -0.167 4.167 9 C -0.151 4.151 10 C -0.176 4.176 11 C -0.001 4.001 12 N -0.380 5.380 13 C 0.359 3.641 14 O -0.413 6.413 15 C -0.578 4.578 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.394 5.394 19 Si 0.729 3.271 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 O -0.043 6.043 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.113 0.887 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.671 -1.451 8.396 8.929 hybrid contribution 0.273 -0.213 -1.039 1.095 sum 2.944 -1.665 7.357 8.097 Atomic orbital electron populations 1.20086 0.86952 1.02943 1.01951 1.21817 0.93146 0.84800 1.06745 1.21054 0.92957 0.98015 1.11257 1.20959 0.97251 0.93546 1.14960 1.21380 0.83226 0.93180 1.00359 1.19252 0.91672 0.90270 0.86715 0.90502 1.21962 0.99747 0.97569 0.97434 1.21460 0.98317 0.97589 0.97726 1.21979 1.01886 0.98136 0.95588 1.21442 0.91433 0.88927 0.98309 1.48512 1.37325 1.35917 1.16250 1.18363 0.79692 0.83232 0.82784 1.90610 1.35292 1.37500 1.77879 1.20938 1.25326 1.16676 0.94884 0.90908 1.25690 0.93527 0.94179 0.99689 1.70007 1.17548 1.21359 1.30442 0.86362 0.78678 0.80053 0.81959 1.18774 1.20212 1.20226 1.83983 1.16001 1.34128 1.70205 0.91482 0.91282 0.90532 0.85497 0.85605 0.91333 0.91698 0.92193 0.92386 0.91872 0.91739 0.93837 0.88736 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.42 36.01 0.38 -0.71 16 2 C -0.01 -0.31 6.96 -35.63 -0.25 -0.56 16 3 C -0.21 -4.58 10.81 -39.70 -0.43 -5.01 16 4 C -0.25 -5.47 10.74 -39.70 -0.43 -5.89 16 5 C 0.07 1.62 3.62 -35.63 -0.13 1.49 16 6 C 0.23 4.55 3.36 -68.72 -0.23 4.32 16 7 H 0.08 1.43 8.11 -51.93 -0.42 1.00 16 8 C -0.13 -2.13 5.35 -26.62 -0.14 -2.27 16 9 C -0.11 -1.56 5.88 -26.70 -0.16 -1.72 16 10 C -0.14 -2.06 6.08 -26.61 -0.16 -2.22 16 11 C 0.12 2.25 6.32 -3.71 -0.02 2.22 16 12 N -0.64 -14.51 2.97 -168.14 -0.50 -15.01 16 13 C 0.55 15.48 7.52 -12.99 -0.10 15.38 16 14 O -0.53 -16.34 10.09 -19.60 -0.20 -16.54 16 15 C -0.54 -14.98 8.86 -35.63 -0.32 -15.30 16 16 H 0.07 1.85 5.68 -52.49 -0.30 1.55 16 17 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 18 N -0.76 -22.66 11.87 55.55 0.66 -22.00 16 19 Si 0.90 20.04 29.56 -169.99 -5.02 15.01 16 20 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 O -0.15 -3.65 8.68 -19.12 -0.17 -3.81 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 28 H 0.13 2.49 8.06 -52.49 -0.42 2.06 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.83 5.37 -51.93 -0.28 1.55 16 37 H 0.27 7.24 8.29 -40.82 -0.34 6.91 16 LS Contribution 300.89 15.07 4.53 4.53 Total: -1.00 -33.90 300.89 -7.98 -41.88 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.21 Total: 3.84 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.08 Total: -7.91 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.16 Total: -37.00 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.36 Total: -20.35 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.90 -7.98 -41.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187053766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.271 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds