Wall clock time and date at job start Mon Mar 30 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34505 * 125.79105 * 2 1 4 4 C 1.41392 * 106.84069 * 179.74846 * 3 2 1 5 5 C 1.34508 * 106.83784 * 0.37719 * 4 3 2 6 6 C 1.50700 * 125.78945 * 179.89155 * 5 4 3 7 7 H 1.09000 * 109.69849 * 3.38137 * 6 5 4 8 8 C 1.53190 * 109.59214 * 123.73407 * 6 5 4 9 9 C 1.53035 * 109.34203 * 174.43708 * 8 6 5 10 10 C 1.53031 * 109.54111 * 298.62306 * 9 8 6 11 11 C 1.53194 * 109.31476 * 61.36008 * 10 9 8 12 12 N 1.46922 * 108.77489 * 305.36825 * 11 10 9 13 13 C 1.34773 * 120.62963 * 233.62313 * 12 11 10 14 14 O 1.21692 * 120.00054 * 174.93307 * 13 12 11 15 15 C 1.46377 * 120.00051 * 354.93988 * 13 12 11 16 16 H 1.07996 * 119.99965 * 9.30768 * 15 13 12 17 17 C 1.40050 * 119.99722 * 189.30923 * 15 13 12 18 18 N 1.30672 * 120.00508 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.47299 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47254 * 119.99488 * 19 17 15 22 22 H 1.48500 * 109.47409 * 239.99793 * 19 17 15 23 23 O 1.34308 * 125.78386 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47009 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47059 * 300.00255 * 1 2 3 26 26 H 1.09005 * 109.46852 * 59.99827 * 1 2 3 27 27 H 1.08001 * 126.58075 * 359.96649 * 3 2 1 28 28 H 1.08001 * 126.57833 * 180.23792 * 4 3 2 29 29 H 1.09006 * 109.49633 * 54.47048 * 8 6 5 30 30 H 1.09006 * 109.49916 * 294.41271 * 8 6 5 31 31 H 1.09001 * 109.45838 * 58.64747 * 9 8 6 32 32 H 1.08998 * 109.46026 * 178.60995 * 9 8 6 33 33 H 1.09000 * 109.49942 * 181.31819 * 10 9 8 34 34 H 1.09005 * 109.49688 * 301.37810 * 10 9 8 35 35 H 1.09000 * 109.58108 * 65.15546 * 11 10 9 36 36 H 1.08997 * 109.58820 * 185.57992 * 11 10 9 37 37 H 0.96992 * 120.00229 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6310 0.6319 0.0059 5 6 3.5814 -0.7123 0.0007 6 6 4.7705 -1.6380 0.0018 7 1 5.6895 -1.0556 0.0680 8 6 4.6790 -2.5905 1.1981 9 6 5.8118 -3.6162 1.1172 10 6 5.6675 -4.4380 -0.1657 11 6 5.7707 -3.5071 -1.3779 12 7 4.7788 -2.4326 -1.2348 13 6 3.8930 -2.1804 -2.2187 14 8 3.0183 -1.3509 -2.0519 15 6 3.9828 -2.9043 -3.4877 16 1 4.6578 -3.7417 -3.5851 17 6 3.1934 -2.5108 -4.5757 18 7 2.3764 -1.4979 -4.4577 19 14 3.3086 -3.4342 -6.1954 20 1 4.2997 -4.5330 -6.0695 21 1 1.9800 -4.0034 -6.5363 22 1 3.7371 -2.5008 -7.2679 23 8 2.2924 -1.0895 0.0005 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.9666 2.1203 -0.0005 28 1 4.5213 1.2432 0.0111 29 1 3.7189 -3.1064 1.1797 30 1 4.7685 -2.0217 2.1237 31 1 6.7708 -3.0983 1.1109 32 1 5.7632 -4.2797 1.9807 33 1 6.4610 -5.1839 -0.2111 34 1 4.6985 -4.9370 -0.1710 35 1 6.7712 -3.0771 -1.4243 36 1 5.5702 -4.0704 -2.2893 37 1 1.8300 -1.2253 -5.2113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187053766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:51 Heat of formation + Delta-G solvation = -38.020129 kcal Electronic energy + Delta-G solvation = -20980.669432 eV Core-core repulsion = 17916.940033 eV Total energy + Delta-G solvation = -3063.729399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.15941 -40.21817 -37.57085 -34.71094 -33.72190 -33.58186 -33.22855 -31.36930 -28.51132 -27.26825 -25.34106 -23.83480 -22.58175 -22.02060 -21.01811 -20.29324 -18.51928 -17.88559 -17.00251 -16.65958 -16.21903 -15.88157 -15.50298 -15.28841 -14.82525 -14.56816 -14.35359 -14.07720 -13.86053 -13.67327 -13.39733 -13.37905 -13.09620 -12.92402 -12.78185 -12.55974 -12.40702 -12.21937 -11.99274 -11.71018 -11.49822 -11.30096 -10.92778 -10.45418 -9.90998 -9.05183 -8.58326 -8.12428 -6.78486 1.17562 1.37160 1.37831 1.54014 1.94348 2.22815 2.45925 2.52162 2.89951 3.58752 3.76080 3.95295 4.04585 4.15395 4.26893 4.32621 4.36979 4.43334 4.57360 4.66659 4.72537 4.83607 4.91067 4.97320 5.02565 5.10612 5.13472 5.17785 5.22875 5.26619 5.42616 5.52476 5.58393 5.78319 6.00348 6.17180 6.37289 6.68783 6.91938 7.45156 8.51834 8.70598 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.009891 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.945795 B = 2830.187396 C = 4276.905462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.038 4.038 3 C -0.226 4.226 4 C -0.264 4.264 5 C 0.049 3.951 6 C 0.216 3.784 7 H 0.095 0.905 8 C -0.120 4.120 9 C -0.106 4.106 10 C -0.130 4.130 11 C 0.115 3.885 12 N -0.644 5.644 13 C 0.534 3.466 14 O -0.572 6.572 15 C -0.568 4.568 16 H 0.089 0.911 17 C 0.033 3.967 18 N -0.819 5.819 19 Si 0.988 3.012 20 H -0.246 1.246 21 H -0.273 1.273 22 H -0.271 1.271 23 O -0.177 6.177 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.152 0.848 28 H 0.143 0.857 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -2.829 8.971 10.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C -0.245 4.245 4 C -0.284 4.284 5 C -0.002 4.002 6 C 0.113 3.887 7 H 0.113 0.887 8 C -0.158 4.158 9 C -0.144 4.144 10 C -0.168 4.168 11 C -0.008 4.008 12 N -0.383 5.383 13 C 0.338 3.662 14 O -0.456 6.456 15 C -0.604 4.604 16 H 0.107 0.893 17 C -0.182 4.182 18 N -0.449 5.449 19 Si 0.809 3.191 20 H -0.169 1.169 21 H -0.198 1.198 22 H -0.196 1.196 23 O -0.073 6.073 24 H 0.081 0.919 25 H 0.127 0.873 26 H 0.096 0.904 27 H 0.170 0.830 28 H 0.161 0.839 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.310 -2.573 8.991 10.297 hybrid contribution -0.198 0.180 -1.131 1.162 sum 4.113 -2.393 7.859 9.188 Atomic orbital electron populations 1.20243 0.84131 1.03301 1.03904 1.22750 0.95142 0.84569 1.06376 1.21453 0.92821 0.99208 1.11066 1.21370 0.98342 0.93838 1.14800 1.21991 0.83504 0.94217 1.00488 1.19649 0.91275 0.90769 0.87032 0.88730 1.21904 0.99744 0.97604 0.96570 1.21470 0.97818 0.97098 0.97966 1.21927 1.02147 0.98119 0.94606 1.21685 0.91180 0.88440 0.99453 1.48374 1.36954 1.36839 1.16109 1.18711 0.80228 0.83104 0.84107 1.90574 1.36968 1.38798 1.79285 1.21458 1.25994 1.17427 0.95557 0.89285 1.26835 0.92542 0.94827 1.03965 1.70181 1.19047 1.23677 1.31975 0.85103 0.79048 0.78811 0.76176 1.16912 1.19842 1.19591 1.83946 1.17075 1.35593 1.70694 0.91914 0.87313 0.90381 0.82993 0.83883 0.94091 0.89502 0.90053 0.89568 0.88196 0.93817 0.91605 0.90359 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.06 10.42 71.24 0.74 -1.31 16 2 C -0.04 -1.72 6.96 24.83 0.17 -1.55 16 3 C -0.23 -9.82 10.81 22.19 0.24 -9.58 16 4 C -0.26 -11.82 10.74 22.19 0.24 -11.58 16 5 C 0.05 2.31 3.62 24.83 0.09 2.40 16 6 C 0.22 8.67 3.36 44.21 0.15 8.82 16 7 H 0.10 3.39 8.11 -2.39 -0.02 3.37 16 8 C -0.12 -3.79 5.35 30.67 0.16 -3.63 16 9 C -0.11 -2.55 5.88 30.62 0.18 -2.37 16 10 C -0.13 -3.55 6.08 30.67 0.19 -3.36 16 11 C 0.11 4.05 6.32 86.36 0.55 4.59 16 12 N -0.64 -29.34 2.97 -804.08 -2.39 -31.73 16 13 C 0.53 30.77 7.52 86.36 0.65 31.42 16 14 O -0.57 -36.66 10.09 19.38 0.20 -36.47 16 15 C -0.57 -32.04 8.86 24.83 0.22 -31.82 16 16 H 0.09 4.54 5.68 -2.91 -0.02 4.52 16 17 C 0.03 1.86 5.50 85.31 0.47 2.32 16 18 N -0.82 -50.24 11.87 21.84 0.26 -49.98 16 19 Si 0.99 41.51 29.56 68.60 2.03 43.54 16 20 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 23 O -0.18 -9.06 8.68 21.12 0.18 -8.87 16 24 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 26 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 27 H 0.15 5.56 8.06 -2.91 -0.02 5.54 16 28 H 0.14 5.65 8.06 -2.91 -0.02 5.63 16 29 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.09 2.34 8.14 -2.38 -0.02 2.33 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 2.98 5.37 -2.39 -0.01 2.97 16 37 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 Total: -1.00 -77.65 300.89 5.38 -72.26 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 1.06 Total: 26.88 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 4.05 Total: -15.64 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.13 Total: -81.70 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: 0.38 Total: -45.34 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -77.65 5.38 -72.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187053766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.242 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds