Wall clock time and date at job start Mon Mar 30 2020 06:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 O 1.45199 * 109.47039 * 295.00131 * 3 2 1 14 14 C 1.34233 * 117.00343 * 90.00377 * 13 3 2 15 15 O 1.20825 * 119.99677 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00210 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46881 * 179.97438 * 16 14 13 18 18 C 1.50708 * 109.46916 * 180.02562 * 17 16 14 19 19 C 1.38651 * 120.78896 * 269.72138 * 18 17 16 20 20 C 1.38201 * 119.15818 * 179.79446 * 19 18 17 21 21 N 1.31876 * 120.76818 * 0.49411 * 20 19 18 22 22 C 1.31873 * 121.72291 * 359.73879 * 21 20 19 23 23 C 1.38205 * 120.76385 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 25 25 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 27 27 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 28 28 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 29 29 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 30 30 H 1.08990 * 109.47304 * 299.99978 * 16 14 13 31 31 H 1.08999 * 109.46899 * 60.00161 * 16 14 13 32 32 H 1.08990 * 109.47643 * 300.00395 * 17 16 14 33 33 H 1.08999 * 109.46713 * 60.00671 * 17 16 14 34 34 H 1.08001 * 120.42297 * 0.02562 * 19 18 17 35 35 H 1.08000 * 119.61832 * 180.24906 * 20 19 18 36 36 H 1.07994 * 119.61514 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.42113 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5992 1.5338 0.1874 11 1 6.4051 1.6106 2.6036 12 1 6.4917 -0.5266 1.4610 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2560 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5084 17 6 -1.3615 4.0591 -2.2591 18 6 -1.8271 4.7557 -3.5118 19 6 -1.5192 6.0884 -3.7390 20 6 -1.9598 6.6926 -4.9012 21 7 -2.6727 6.0195 -5.7831 22 6 -2.9882 4.7525 -5.5979 23 6 -2.5785 4.0808 -4.4616 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.8292 -0.0558 2.9526 30 1 0.7243 4.1969 -2.7809 31 1 -0.0713 2.6985 -3.3193 32 1 -2.0783 3.2846 -1.9868 33 1 -1.2831 4.7831 -1.4481 34 1 -0.9393 6.6462 -3.0186 35 1 -1.7208 7.7292 -5.0876 36 1 -3.5741 4.2341 -6.3424 37 1 -2.8404 3.0433 -4.3154 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187888882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:25 Heat of formation + Delta-G solvation = -73.957823 kcal Electronic energy + Delta-G solvation = -19199.999118 eV Core-core repulsion = 16134.711344 eV Total energy + Delta-G solvation = -3065.287775 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37783 -39.60744 -36.13437 -34.70968 -33.52377 -31.45926 -31.36434 -30.69406 -27.39953 -25.53163 -23.62031 -23.21278 -21.91879 -20.51815 -19.39469 -17.31214 -16.74681 -16.61355 -16.33842 -15.74921 -15.61013 -15.26392 -14.52714 -14.02761 -13.99931 -13.58712 -13.05030 -12.97287 -12.56240 -12.30395 -12.04530 -11.79808 -11.47904 -11.29565 -11.18599 -11.01989 -10.98052 -10.66989 -10.29654 -9.87981 -9.78701 -9.65647 -9.51580 -9.38039 -9.32753 -8.82627 -8.48322 -6.21267 -4.28259 0.96405 1.06446 2.97979 3.21437 3.28423 3.32962 3.54173 3.73752 4.28742 4.30343 4.58906 4.61054 4.90724 4.97968 5.02286 5.10545 5.12399 5.39933 5.53846 5.58042 5.75200 5.80866 5.88693 6.05106 6.19591 6.25373 6.26093 6.42766 6.53796 6.83953 6.93594 7.13690 7.23785 7.59599 7.71125 7.79463 7.92712 8.13497 8.61106 8.87044 9.37224 10.85578 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035366 B = 0.003737 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.541215 B = 7490.313586 C = 7938.231628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.357 6.357 14 C 0.451 3.549 15 O -0.518 6.518 16 C -0.110 4.110 17 C -0.072 4.072 18 C -0.033 4.033 19 C -0.169 4.169 20 C 0.098 3.902 21 N -0.493 5.493 22 C 0.097 3.903 23 C -0.170 4.170 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.108 0.892 29 H 0.266 0.734 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.667 7.128 -11.191 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.273 6.273 14 C 0.294 3.706 15 O -0.409 6.409 16 C -0.148 4.148 17 C -0.110 4.110 18 C -0.041 4.041 19 C -0.189 4.189 20 C -0.059 4.059 21 N -0.202 5.202 22 C -0.059 4.059 23 C -0.189 4.189 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.091 7.425 -11.450 16.972 hybrid contribution 1.188 -0.579 1.044 1.683 sum -8.903 6.846 -10.406 15.311 Atomic orbital electron populations 1.21855 0.98373 0.98982 1.00710 1.22018 0.92647 0.99399 1.03345 1.20678 0.95026 0.88769 0.78696 0.93494 1.21093 0.89726 1.39013 1.06135 0.91302 1.24895 0.99266 0.94749 0.95074 1.69902 1.35300 1.37997 1.09353 0.86234 0.83889 0.77903 0.78218 1.19482 1.20746 1.20700 1.86476 1.34257 1.62395 1.44145 1.23189 0.80894 0.77048 0.89463 1.90611 1.55534 1.58690 1.36031 1.21265 0.97050 1.00870 0.95644 1.20457 0.96043 1.00498 0.93958 1.20370 0.94191 0.93885 0.95631 1.22139 1.01923 0.95373 0.99462 1.22758 0.93362 0.99958 0.89824 1.67673 1.12471 1.08857 1.31213 1.22753 0.96752 0.90483 0.95931 1.22130 0.99880 1.01649 0.95277 0.94985 0.94830 0.92812 0.93992 0.87371 0.92435 0.88152 0.88274 0.89473 0.89409 0.84576 0.82809 0.82827 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.57 37.16 0.32 -2.72 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.48 16 3 C 0.22 5.78 2.25 -27.88 -0.06 5.71 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.46 8.90 -34.44 -0.31 -14.76 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.84 11.31 55.43 0.63 -24.21 16 9 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 O -0.36 -8.23 9.81 -39.27 -0.39 -8.61 16 14 C 0.45 8.79 6.41 36.00 0.23 9.02 16 15 O -0.52 -11.27 13.12 -18.75 -0.25 -11.51 16 16 C -0.11 -1.49 5.79 -27.88 -0.16 -1.65 16 17 C -0.07 -0.85 4.68 -27.88 -0.13 -0.98 16 18 C -0.03 -0.34 5.17 -104.31 -0.54 -0.88 16 19 C -0.17 -1.66 9.82 -39.44 -0.39 -2.05 16 20 C 0.10 0.96 11.18 -17.55 -0.20 0.77 16 21 N -0.49 -5.57 10.36 -13.25 -0.14 -5.71 16 22 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 23 C -0.17 -1.65 9.82 -39.44 -0.39 -2.04 16 24 H 0.03 0.65 6.06 -51.93 -0.31 0.33 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 1.21 7.80 -51.93 -0.40 0.80 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.11 2.88 5.96 -51.93 -0.31 2.58 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.09 1.05 8.06 -51.93 -0.42 0.64 16 33 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 314.01 15.07 4.73 4.73 Total: -1.00 -30.98 314.01 -7.65 -38.63 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.17 Total: 1.58 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.06 Total: -10.71 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 0.49 Total: -29.92 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.63 Total: -20.13 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.98 -7.65 -38.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187888882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.323 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds