Wall clock time and date at job start Mon Mar 30 2020 06:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 O 1.45199 * 109.47039 * 295.00131 * 3 2 1 14 14 C 1.34233 * 117.00343 * 90.00377 * 13 3 2 15 15 O 1.20825 * 119.99677 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00210 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46881 * 179.97438 * 16 14 13 18 18 C 1.50708 * 109.46916 * 180.02562 * 17 16 14 19 19 C 1.38651 * 120.78896 * 269.72138 * 18 17 16 20 20 C 1.38201 * 119.15818 * 179.79446 * 19 18 17 21 21 N 1.31876 * 120.76818 * 0.49411 * 20 19 18 22 22 C 1.31873 * 121.72291 * 359.73879 * 21 20 19 23 23 C 1.38205 * 120.76385 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 25 25 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 27 27 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 28 28 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 29 29 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 30 30 H 1.08990 * 109.47304 * 299.99978 * 16 14 13 31 31 H 1.08999 * 109.46899 * 60.00161 * 16 14 13 32 32 H 1.08990 * 109.47643 * 300.00395 * 17 16 14 33 33 H 1.08999 * 109.46713 * 60.00671 * 17 16 14 34 34 H 1.08001 * 120.42297 * 0.02562 * 19 18 17 35 35 H 1.08000 * 119.61832 * 180.24906 * 20 19 18 36 36 H 1.07994 * 119.61514 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.42113 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5992 1.5338 0.1874 11 1 6.4051 1.6106 2.6036 12 1 6.4917 -0.5266 1.4610 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2560 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5084 17 6 -1.3615 4.0591 -2.2591 18 6 -1.8271 4.7557 -3.5118 19 6 -1.5192 6.0884 -3.7390 20 6 -1.9598 6.6926 -4.9012 21 7 -2.6727 6.0195 -5.7831 22 6 -2.9882 4.7525 -5.5979 23 6 -2.5785 4.0808 -4.4616 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.8292 -0.0558 2.9526 30 1 0.7243 4.1969 -2.7809 31 1 -0.0713 2.6985 -3.3193 32 1 -2.0783 3.2846 -1.9868 33 1 -1.2831 4.7831 -1.4481 34 1 -0.9393 6.6462 -3.0186 35 1 -1.7208 7.7292 -5.0876 36 1 -3.5741 4.2341 -6.3424 37 1 -2.8404 3.0433 -4.3154 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187888882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:25 Heat of formation + Delta-G solvation = -90.907509 kcal Electronic energy + Delta-G solvation = -19200.734112 eV Core-core repulsion = 16134.711344 eV Total energy + Delta-G solvation = -3066.022768 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47304 -40.94028 -37.82038 -35.76597 -35.48732 -33.37466 -32.07742 -31.74899 -29.33975 -26.71705 -25.09368 -24.34451 -23.02961 -22.05236 -21.09617 -18.91455 -18.54597 -17.61111 -17.45401 -17.02147 -16.98488 -16.43644 -16.22771 -15.20928 -14.92368 -14.79230 -14.63704 -14.39646 -13.77515 -13.59405 -13.43464 -13.32547 -13.08179 -12.99780 -12.81656 -12.65635 -12.52787 -12.13444 -11.97404 -11.75501 -11.44748 -11.24323 -10.81218 -10.53783 -10.48754 -10.40664 -10.04110 -8.27994 -6.44538 0.24955 0.27869 1.40482 1.41642 1.42907 1.55825 2.08073 2.42774 2.90970 3.01781 3.60885 3.68124 3.81467 3.87196 4.19680 4.22661 4.24263 4.28768 4.37968 4.40783 4.50438 4.62906 4.76147 4.76807 4.85002 4.96925 5.05983 5.09655 5.11275 5.22319 5.40867 5.46212 5.52354 5.68014 5.82434 6.00001 6.16749 6.61285 7.03076 7.06669 7.27978 8.78851 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035366 B = 0.003737 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.541215 B = 7490.313586 C = 7938.231628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.224 3.776 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.272 1.272 13 O -0.367 6.367 14 C 0.444 3.556 15 O -0.544 6.544 16 C -0.097 4.097 17 C -0.062 4.062 18 C -0.042 4.042 19 C -0.172 4.172 20 C 0.090 3.910 21 N -0.516 5.516 22 C 0.090 3.910 23 C -0.171 4.171 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.270 0.730 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.549 7.335 -12.583 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.803 3.197 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.197 1.197 13 O -0.284 6.284 14 C 0.289 3.711 15 O -0.435 6.435 16 C -0.135 4.135 17 C -0.100 4.100 18 C -0.051 4.051 19 C -0.192 4.192 20 C -0.066 4.066 21 N -0.226 5.226 22 C -0.066 4.066 23 C -0.190 4.190 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.168 0.832 35 H 0.193 0.807 36 H 0.194 0.806 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.994 7.641 -12.856 17.987 hybrid contribution 1.073 -0.594 1.465 1.911 sum -8.921 7.047 -11.391 16.093 Atomic orbital electron populations 1.21708 0.96078 1.00599 1.00235 1.21866 0.94666 0.98123 1.02232 1.20342 0.94415 0.89326 0.78793 0.97481 1.21386 0.90733 1.39960 1.06718 0.91711 1.25795 1.04165 0.93909 0.94412 1.70021 1.37323 1.38116 1.09752 0.85178 0.77839 0.78299 0.78362 1.18825 1.20165 1.19729 1.86466 1.36390 1.63126 1.42431 1.24374 0.79377 0.76189 0.91145 1.90601 1.55842 1.59437 1.37643 1.21377 0.98138 1.01221 0.92726 1.20324 0.94893 1.00183 0.94578 1.20287 0.95172 0.94328 0.95264 1.22333 1.01844 0.95262 0.99767 1.23144 0.92944 1.00969 0.89574 1.67709 1.13179 1.09697 1.32021 1.23163 0.96718 0.90244 0.96496 1.22335 0.99331 1.02462 0.94913 0.94055 0.92090 0.94600 0.93615 0.89769 0.92068 0.86370 0.86050 0.89852 0.90145 0.83215 0.80693 0.80598 0.82997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 8.57 71.98 0.62 -4.88 16 2 C -0.13 -6.50 5.49 30.60 0.17 -6.34 16 3 C 0.22 12.06 2.25 29.85 0.07 12.13 16 4 H 0.01 0.45 7.16 -2.39 -0.02 0.43 16 5 C -0.55 -31.04 8.90 25.60 0.23 -30.82 16 6 H 0.06 3.60 7.81 -2.92 -0.02 3.58 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.91 -52.00 11.31 21.45 0.24 -51.76 16 9 Si 0.98 42.61 29.54 68.60 2.03 44.63 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 13 O -0.37 -17.09 9.81 -51.45 -0.50 -17.59 16 14 C 0.44 17.20 6.41 71.24 0.46 17.66 16 15 O -0.54 -23.97 13.12 21.97 0.29 -23.68 16 16 C -0.10 -2.45 5.79 29.85 0.17 -2.27 16 17 C -0.06 -1.38 4.68 29.85 0.14 -1.24 16 18 C -0.04 -0.81 5.17 -19.66 -0.10 -0.91 16 19 C -0.17 -3.05 9.82 22.36 0.22 -2.83 16 20 C 0.09 1.60 11.18 84.68 0.95 2.55 16 21 N -0.52 -10.75 10.36 -195.84 -2.03 -12.78 16 22 C 0.09 1.58 11.18 84.68 0.95 2.53 16 23 C -0.17 -2.94 9.82 22.36 0.22 -2.72 16 24 H 0.04 1.65 6.06 -2.39 -0.01 1.63 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.03 1.63 7.80 -2.39 -0.02 1.61 16 27 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.08 4.60 5.96 -2.39 -0.01 4.59 16 29 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.08 1.91 8.06 -2.39 -0.02 1.89 16 33 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -67.61 314.01 5.60 -62.00 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.05 Total: 14.96 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 4.53 Total: -15.78 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -1.79 Total: -64.54 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.22 Total: -41.28 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -67.61 5.60 -62.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187888882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.903 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds