Wall clock time and date at job start Mon Mar 30 2020 06:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47157 * 304.51347 * 3 2 1 5 5 C 1.50699 * 109.47206 * 184.51535 * 3 2 1 6 6 H 1.08004 * 120.00347 * 245.62441 * 5 3 2 7 7 C 1.37881 * 120.00173 * 65.62249 * 5 3 2 8 8 N 1.31510 * 120.00258 * 195.78829 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.78895 * 7 5 3 10 10 H 1.48498 * 109.47334 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47050 * 299.99962 * 9 7 5 12 12 H 1.48497 * 109.47480 * 59.99908 * 9 7 5 13 13 O 1.45199 * 109.47308 * 64.51367 * 3 2 1 14 14 C 1.34232 * 117.00062 * 270.00013 * 13 3 2 15 15 O 1.20825 * 119.99721 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99837 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.46878 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.46878 * 179.97438 * 17 16 14 19 19 C 1.38653 * 120.78958 * 269.72071 * 18 17 16 20 20 C 1.38203 * 119.15908 * 179.80115 * 19 18 17 21 21 N 1.31874 * 120.76801 * 0.48468 * 20 19 18 22 22 C 1.31867 * 121.72310 * 359.74498 * 21 20 19 23 23 C 1.38206 * 120.76341 * 0.02562 * 22 21 20 24 24 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 25 25 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 27 27 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 28 28 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 29 29 H 0.97000 * 120.00250 * 354.87661 * 8 7 5 30 30 H 1.09000 * 109.47411 * 299.99911 * 16 14 13 31 31 H 1.09008 * 109.47165 * 60.00013 * 16 14 13 32 32 H 1.08995 * 109.47174 * 299.99692 * 17 16 14 33 33 H 1.08997 * 109.46832 * 60.00430 * 17 16 14 34 34 H 1.08002 * 120.41735 * 0.02562 * 19 18 17 35 35 H 1.08004 * 119.61473 * 180.20371 * 20 19 18 36 36 H 1.07996 * 119.61855 * 180.02562 * 22 21 20 37 37 H 1.08007 * 120.41597 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1450 1.8079 0.7075 7 6 4.1492 0.9804 -1.2602 8 7 5.4313 0.6878 -1.2547 9 14 3.1494 0.7682 -2.8238 10 1 4.0278 0.2598 -3.9078 11 1 2.0513 -0.2017 -2.5814 12 1 2.5741 2.0771 -3.2251 13 8 1.6460 2.0951 1.2357 14 6 0.4627 2.7289 1.2397 15 8 -0.2209 2.7384 0.2435 16 6 -0.0130 3.4287 2.4868 17 6 -1.3791 4.0658 2.2244 18 6 -1.8550 4.7650 3.4716 19 6 -2.6200 4.0940 4.4134 20 6 -3.0350 4.7668 5.5470 21 7 -2.7196 6.0337 5.7331 22 6 -1.9978 6.7044 4.8567 23 6 -1.5435 6.0963 3.7018 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.9665 0.8676 -0.4659 30 1 -0.0984 2.7064 3.2986 31 1 0.7019 4.2037 2.7637 32 1 -1.2931 4.7883 1.4128 33 1 -2.0940 3.2912 1.9473 34 1 -2.8851 3.0576 4.2647 35 1 -3.6284 4.2503 6.2870 36 1 -1.7590 7.7409 5.0436 37 1 -0.9531 6.6511 2.9875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187888910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:28 Heat of formation + Delta-G solvation = -72.484349 kcal Electronic energy + Delta-G solvation = -19282.786157 eV Core-core repulsion = 16217.562278 eV Total energy + Delta-G solvation = -3065.223880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44964 -39.81170 -36.34269 -34.81354 -33.59312 -31.95929 -31.41358 -30.82511 -27.66513 -25.61640 -23.67182 -22.60517 -22.03877 -20.77988 -19.56022 -17.85853 -17.27185 -16.71513 -16.45767 -15.91320 -15.79397 -15.45833 -14.36328 -14.09114 -13.90789 -13.56811 -13.37322 -12.95721 -12.67069 -12.53566 -12.39311 -12.16039 -11.91720 -11.63572 -11.31487 -11.10397 -10.95257 -10.56036 -10.07041 -9.99389 -9.74045 -9.70530 -9.64895 -9.50486 -9.37623 -8.88208 -8.41599 -6.67189 -4.28520 0.91495 1.00892 2.79215 3.28189 3.36182 3.39365 3.51921 3.65152 4.24588 4.33114 4.50955 4.53045 4.82938 4.92461 4.93839 5.03515 5.07085 5.31536 5.45029 5.52242 5.61435 5.67373 5.79631 5.86060 5.92965 5.95676 6.04754 6.18596 6.41545 6.48690 6.58779 6.74337 6.79569 7.15009 7.35959 7.74914 7.78944 8.20777 8.44408 8.80432 9.39897 10.75695 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038518 B = 0.003892 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.752856 B = 7192.486128 C = 7417.512836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.201 3.799 4 H 0.038 0.962 5 C -0.608 4.608 6 H 0.068 0.932 7 C 0.039 3.961 8 N -0.894 5.894 9 Si 1.037 2.963 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.278 1.278 13 O -0.344 6.344 14 C 0.451 3.549 15 O -0.520 6.520 16 C -0.110 4.110 17 C -0.072 4.072 18 C -0.034 4.034 19 C -0.170 4.170 20 C 0.098 3.902 21 N -0.492 5.492 22 C 0.098 3.902 23 C -0.169 4.169 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.271 0.729 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.158 6.822 9.553 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.147 3.853 4 H 0.056 0.944 5 C -0.645 4.645 6 H 0.086 0.914 7 C -0.167 4.167 8 N -0.527 5.527 9 Si 0.864 3.136 10 H -0.204 1.204 11 H -0.195 1.195 12 H -0.204 1.204 13 O -0.260 6.260 14 C 0.294 3.706 15 O -0.411 6.411 16 C -0.148 4.148 17 C -0.109 4.109 18 C -0.042 4.042 19 C -0.189 4.189 20 C -0.059 4.059 21 N -0.201 5.201 22 C -0.058 4.058 23 C -0.189 4.189 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.485 6.677 8.422 18.849 hybrid contribution 0.270 0.083 0.806 0.854 sum -15.215 6.760 9.228 19.036 Atomic orbital electron populations 1.21901 0.97436 0.99819 1.01393 1.22446 0.93798 0.99429 1.03021 1.20917 0.96176 0.88054 0.80147 0.94387 1.21953 0.88715 1.49205 1.04638 0.91403 1.25674 0.97390 0.92613 1.01051 1.70861 1.07209 1.40733 1.33922 0.84170 0.75591 0.77789 0.76021 1.20431 1.19487 1.20436 1.86539 1.34229 1.62190 1.43025 1.23326 0.80700 0.76966 0.89623 1.90602 1.56050 1.58889 1.35510 1.21278 0.97165 1.00922 0.95462 1.20454 0.95864 1.00475 0.94132 1.20344 0.94312 0.93924 0.95610 1.22125 0.99807 1.01637 0.95364 1.22762 0.96771 0.90470 0.95884 1.67674 1.12519 1.08907 1.31031 1.22766 0.93223 0.99989 0.89859 1.22143 1.01878 0.95353 0.99507 0.92642 0.94056 0.94064 0.90247 0.92012 0.91825 0.88109 0.87982 0.89372 0.89456 0.84637 0.82793 0.82762 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.56 37.16 0.32 -2.53 16 2 C -0.15 -3.34 5.32 -26.74 -0.14 -3.48 16 3 C 0.20 4.98 1.84 -27.89 -0.05 4.93 16 4 H 0.04 0.98 5.84 -51.93 -0.30 0.68 16 5 C -0.61 -17.23 9.17 -34.44 -0.32 -17.55 16 6 H 0.07 2.07 8.06 -52.48 -0.42 1.65 16 7 C 0.04 1.11 5.33 -17.82 -0.10 1.01 16 8 N -0.89 -26.82 13.69 55.43 0.76 -26.07 16 9 Si 1.04 24.73 26.27 -169.99 -4.47 20.27 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -5.89 5.61 56.52 0.32 -5.57 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 O -0.34 -7.73 9.80 -39.26 -0.38 -8.12 16 14 C 0.45 8.37 6.39 36.00 0.23 8.60 16 15 O -0.52 -10.58 13.13 -18.75 -0.25 -10.83 16 16 C -0.11 -1.42 5.79 -27.88 -0.16 -1.58 16 17 C -0.07 -0.80 4.68 -27.88 -0.13 -0.93 16 18 C -0.03 -0.34 5.17 -104.32 -0.54 -0.88 16 19 C -0.17 -1.58 9.82 -39.44 -0.39 -1.96 16 20 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 21 N -0.49 -5.43 10.36 -13.25 -0.14 -5.57 16 22 C 0.10 0.94 11.18 -17.55 -0.20 0.75 16 23 C -0.17 -1.60 9.82 -39.44 -0.39 -1.99 16 24 H 0.05 1.09 7.77 -51.93 -0.40 0.69 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.76 6.07 -51.93 -0.32 0.44 16 27 H 0.08 1.82 4.67 -51.93 -0.24 1.58 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.09 1.02 8.06 -51.93 -0.42 0.60 16 33 H 0.09 0.98 8.06 -51.93 -0.42 0.56 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -32.17 309.40 -7.01 -39.18 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.14 Total: 1.36 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -2.05 Total: -14.89 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.62 Total: -31.64 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.63 Total: -18.94 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.47 Total: 20.27 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.17 -7.01 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187888910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.308 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds