Wall clock time and date at job start Mon Mar 30 2020 06:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47157 * 304.51347 * 3 2 1 5 5 C 1.50699 * 109.47206 * 184.51535 * 3 2 1 6 6 H 1.08004 * 120.00347 * 245.62441 * 5 3 2 7 7 C 1.37881 * 120.00173 * 65.62249 * 5 3 2 8 8 N 1.31510 * 120.00258 * 195.78829 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.78895 * 7 5 3 10 10 H 1.48498 * 109.47334 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47050 * 299.99962 * 9 7 5 12 12 H 1.48497 * 109.47480 * 59.99908 * 9 7 5 13 13 O 1.45199 * 109.47308 * 64.51367 * 3 2 1 14 14 C 1.34232 * 117.00062 * 270.00013 * 13 3 2 15 15 O 1.20825 * 119.99721 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99837 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.46878 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.46878 * 179.97438 * 17 16 14 19 19 C 1.38653 * 120.78958 * 269.72071 * 18 17 16 20 20 C 1.38203 * 119.15908 * 179.80115 * 19 18 17 21 21 N 1.31874 * 120.76801 * 0.48468 * 20 19 18 22 22 C 1.31867 * 121.72310 * 359.74498 * 21 20 19 23 23 C 1.38206 * 120.76341 * 0.02562 * 22 21 20 24 24 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 25 25 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 27 27 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 28 28 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 29 29 H 0.97000 * 120.00250 * 354.87661 * 8 7 5 30 30 H 1.09000 * 109.47411 * 299.99911 * 16 14 13 31 31 H 1.09008 * 109.47165 * 60.00013 * 16 14 13 32 32 H 1.08995 * 109.47174 * 299.99692 * 17 16 14 33 33 H 1.08997 * 109.46832 * 60.00430 * 17 16 14 34 34 H 1.08002 * 120.41735 * 0.02562 * 19 18 17 35 35 H 1.08004 * 119.61473 * 180.20371 * 20 19 18 36 36 H 1.07996 * 119.61855 * 180.02562 * 22 21 20 37 37 H 1.08007 * 120.41597 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1450 1.8079 0.7075 7 6 4.1492 0.9804 -1.2602 8 7 5.4313 0.6878 -1.2547 9 14 3.1494 0.7682 -2.8238 10 1 4.0278 0.2598 -3.9078 11 1 2.0513 -0.2017 -2.5814 12 1 2.5741 2.0771 -3.2251 13 8 1.6460 2.0951 1.2357 14 6 0.4627 2.7289 1.2397 15 8 -0.2209 2.7384 0.2435 16 6 -0.0130 3.4287 2.4868 17 6 -1.3791 4.0658 2.2244 18 6 -1.8550 4.7650 3.4716 19 6 -2.6200 4.0940 4.4134 20 6 -3.0350 4.7668 5.5470 21 7 -2.7196 6.0337 5.7331 22 6 -1.9978 6.7044 4.8567 23 6 -1.5435 6.0963 3.7018 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.9665 0.8676 -0.4659 30 1 -0.0984 2.7064 3.2986 31 1 0.7019 4.2037 2.7637 32 1 -1.2931 4.7883 1.4128 33 1 -2.0940 3.2912 1.9473 34 1 -2.8851 3.0576 4.2647 35 1 -3.6284 4.2503 6.2870 36 1 -1.7590 7.7409 5.0436 37 1 -0.9531 6.6511 2.9875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187888910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:28 Heat of formation + Delta-G solvation = -91.653068 kcal Electronic energy + Delta-G solvation = -19283.617375 eV Core-core repulsion = 16217.562278 eV Total energy + Delta-G solvation = -3066.055098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58302 -40.98358 -37.94886 -35.79955 -35.53496 -33.88434 -32.09434 -31.79331 -29.52761 -26.70723 -24.46243 -24.36402 -23.17347 -22.14706 -21.17649 -19.90371 -18.75213 -17.74409 -17.47686 -17.14535 -16.96247 -16.39692 -15.90901 -15.16485 -15.12414 -14.85736 -14.66157 -14.53687 -14.42982 -13.86234 -13.55714 -13.49618 -13.14472 -12.94063 -12.69789 -12.68586 -12.40978 -11.99642 -11.92326 -11.58670 -11.54372 -11.23119 -10.86218 -10.59593 -10.51785 -10.42223 -10.05914 -8.94792 -6.57546 0.23151 0.26049 1.31546 1.38857 1.45666 1.64571 2.01198 2.34766 2.88679 2.89764 3.56006 3.64747 3.79573 3.83494 4.10910 4.16702 4.17670 4.22188 4.24630 4.27065 4.38620 4.51941 4.62098 4.74038 4.74666 4.95000 5.00500 5.03798 5.07155 5.09304 5.11588 5.40118 5.43987 5.49527 5.80757 5.84376 5.97728 6.37965 6.92913 7.05160 7.21375 8.47290 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038518 B = 0.003892 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.752856 B = 7192.486128 C = 7417.512836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.147 4.147 3 C 0.202 3.798 4 H 0.031 0.969 5 C -0.619 4.619 6 H 0.029 0.971 7 C -0.004 4.004 8 N -0.921 5.921 9 Si 1.071 2.929 10 H -0.275 1.275 11 H -0.236 1.236 12 H -0.268 1.268 13 O -0.364 6.364 14 C 0.446 3.554 15 O -0.536 6.536 16 C -0.099 4.099 17 C -0.061 4.061 18 C -0.043 4.043 19 C -0.170 4.170 20 C 0.089 3.911 21 N -0.517 5.517 22 C 0.089 3.911 23 C -0.173 4.173 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.258 0.742 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.154 0.846 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.544 6.695 9.723 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.185 4.185 3 C 0.148 3.852 4 H 0.048 0.952 5 C -0.656 4.656 6 H 0.047 0.953 7 C -0.204 4.204 8 N -0.555 5.555 9 Si 0.891 3.109 10 H -0.200 1.200 11 H -0.160 1.160 12 H -0.194 1.194 13 O -0.280 6.280 14 C 0.291 3.709 15 O -0.427 6.427 16 C -0.137 4.137 17 C -0.099 4.099 18 C -0.051 4.051 19 C -0.190 4.190 20 C -0.067 4.067 21 N -0.227 5.227 22 C -0.067 4.067 23 C -0.193 4.193 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.172 0.828 35 H 0.194 0.806 36 H 0.192 0.808 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.889 6.560 8.627 20.915 hybrid contribution 1.021 0.212 0.871 1.359 sum -16.867 6.771 9.498 20.508 Atomic orbital electron populations 1.21808 0.94584 1.01825 1.01393 1.22331 0.96278 0.97265 1.02586 1.20631 0.93707 0.89808 0.81070 0.95177 1.22127 0.91043 1.48847 1.03616 0.95302 1.27054 0.97529 0.91745 1.04105 1.70973 1.08265 1.42812 1.33440 0.83771 0.75449 0.79162 0.72490 1.19994 1.15974 1.19365 1.86521 1.36648 1.63084 1.41755 1.24366 0.79149 0.76130 0.91259 1.90586 1.56100 1.59333 1.36711 1.21396 0.98220 1.01166 0.92925 1.20334 0.94673 1.00279 0.94589 1.20299 0.95156 0.94280 0.95400 1.22345 0.99195 1.02498 0.94918 1.23177 0.96800 0.90219 0.96521 1.67703 1.13276 1.09815 1.31864 1.23137 0.92917 1.00969 0.89706 1.22340 1.01823 0.95364 0.99753 0.93051 0.91039 0.93647 0.90797 0.92391 0.93271 0.86051 0.86721 0.89923 0.89382 0.82824 0.80619 0.80810 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.56 71.98 0.62 -4.31 16 2 C -0.15 -6.36 5.32 30.59 0.16 -6.20 16 3 C 0.20 9.97 1.84 29.84 0.05 10.03 16 4 H 0.03 1.54 5.84 -2.39 -0.01 1.53 16 5 C -0.62 -35.99 9.17 25.60 0.23 -35.76 16 6 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 7 C 0.00 -0.24 5.33 84.66 0.45 0.21 16 8 N -0.92 -56.62 13.69 21.45 0.29 -56.32 16 9 Si 1.07 49.05 26.27 68.60 1.80 50.85 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.24 -9.50 5.61 99.48 0.56 -8.94 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 O -0.36 -16.20 9.80 -51.44 -0.50 -16.71 16 14 C 0.45 15.92 6.39 71.24 0.46 16.38 16 15 O -0.54 -20.96 13.13 21.97 0.29 -20.67 16 16 C -0.10 -2.34 5.79 29.85 0.17 -2.17 16 17 C -0.06 -1.23 4.68 29.85 0.14 -1.09 16 18 C -0.04 -0.77 5.17 -19.67 -0.10 -0.87 16 19 C -0.17 -2.73 9.82 22.36 0.22 -2.51 16 20 C 0.09 1.50 11.18 84.68 0.95 2.45 16 21 N -0.52 -10.53 10.36 -195.84 -2.03 -12.56 16 22 C 0.09 1.55 11.18 84.68 0.95 2.50 16 23 C -0.17 -2.93 9.82 22.36 0.22 -2.71 16 24 H 0.05 1.86 7.77 -2.38 -0.02 1.85 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.04 1.55 6.07 -2.38 -0.01 1.54 16 27 H 0.07 3.25 4.67 -2.39 -0.01 3.24 16 28 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.26 16.05 8.73 -92.71 -0.81 15.24 16 30 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.08 1.75 8.06 -2.39 -0.02 1.73 16 33 H 0.09 1.76 8.06 -2.39 -0.02 1.74 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -70.43 309.40 5.24 -65.19 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.87 Total: 14.28 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 4.52 Total: -24.06 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -1.74 Total: -68.88 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.22 Total: -37.38 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.80 Total: 50.85 kcal Total: -70.43 5.24 -65.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187888910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.467 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds