Wall clock time and date at job start Mon Mar 30 2020 06:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47010 * 2 1 4 4 H 1.09006 * 109.46992 * 55.00211 * 3 2 1 5 5 C 1.50698 * 109.47198 * 174.99898 * 3 2 1 6 6 H 1.08005 * 120.00406 * 120.00107 * 5 3 2 7 7 C 1.37881 * 120.00090 * 300.00203 * 5 3 2 8 8 N 1.31515 * 120.00042 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00102 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47176 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47408 * 120.00008 * 9 7 5 12 12 H 1.48496 * 109.47278 * 240.00013 * 9 7 5 13 13 O 1.45195 * 109.47558 * 294.99870 * 3 2 1 14 14 C 1.34230 * 116.99656 * 89.99651 * 13 3 2 15 15 O 1.20825 * 120.00573 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00023 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47263 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47165 * 180.02562 * 17 16 14 19 19 C 1.38223 * 119.62264 * 125.02051 * 18 17 16 20 20 C 1.38628 * 119.16031 * 179.97438 * 19 18 17 21 21 C 1.38672 * 118.42475 * 359.97438 * 20 19 18 22 22 C 1.38186 * 119.15778 * 0.02562 * 21 20 19 23 23 N 1.31856 * 119.61279 * 304.99522 * 18 17 16 24 24 H 1.08998 * 109.47579 * 299.99591 * 1 2 3 25 25 H 1.08995 * 109.47228 * 60.00133 * 1 2 3 26 26 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47110 * 240.00156 * 2 1 3 28 28 H 1.09005 * 109.47205 * 119.99867 * 2 1 3 29 29 H 0.96995 * 119.99832 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47133 * 60.00247 * 16 14 13 31 31 H 1.08999 * 109.47373 * 300.00263 * 16 14 13 32 32 H 1.08998 * 109.47414 * 60.00331 * 17 16 14 33 33 H 1.09005 * 109.47187 * 299.99604 * 17 16 14 34 34 H 1.07995 * 120.41821 * 359.95030 * 19 18 17 35 35 H 1.08006 * 120.78822 * 180.02562 * 20 19 18 36 36 H 1.07993 * 120.42192 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.60956 * 180.27218 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0049 0.8800 1.3812 10 1 6.5988 1.5442 0.1931 11 1 6.4000 1.6157 2.6092 12 1 6.4962 -0.5189 1.4627 13 8 1.6559 2.0917 -1.2406 14 6 0.4727 2.7254 -1.2559 15 8 -0.2190 2.7376 -0.2652 16 6 0.0069 3.4217 -2.5086 17 6 -1.3613 4.0594 -2.2590 18 6 -1.8273 4.7551 -3.5119 19 6 -3.0576 4.4343 -4.0542 20 6 -3.4770 5.0805 -5.2067 21 6 -2.6399 6.0301 -5.7729 22 6 -1.4238 6.2983 -5.1740 23 7 -1.0570 5.6634 -4.0778 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0613 2.9498 30 1 -0.0721 2.6971 -3.3191 31 1 0.7238 4.1959 -2.7820 32 1 -1.2820 4.7841 -1.4487 33 1 -2.0785 3.2854 -1.9854 34 1 -3.6839 3.6892 -3.5863 35 1 -4.4335 4.8505 -5.6525 36 1 -2.9343 6.5528 -6.6709 37 1 -0.7681 7.0396 -5.6063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188035572.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:20 Heat of formation + Delta-G solvation = -71.476533 kcal Electronic energy + Delta-G solvation = -19213.183082 eV Core-core repulsion = 16148.002904 eV Total energy + Delta-G solvation = -3065.180178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39483 -39.49582 -35.95634 -34.05444 -33.44373 -32.50494 -31.35471 -30.21939 -27.32216 -25.44110 -23.67167 -23.14026 -21.88536 -20.40187 -19.28666 -17.30759 -16.74143 -16.51619 -16.40631 -15.65976 -15.44541 -15.11441 -14.55308 -14.16060 -13.61252 -13.41367 -13.13214 -12.89081 -12.65463 -12.08957 -11.90842 -11.70076 -11.42726 -11.21280 -11.12827 -11.01076 -10.91942 -10.60777 -10.24112 -10.05410 -9.76243 -9.58826 -9.49964 -9.31552 -9.09940 -8.75421 -8.42326 -6.15566 -4.22135 0.93084 1.10493 3.10549 3.25628 3.32462 3.37545 3.57245 3.78854 4.18397 4.36423 4.61605 4.67605 4.88563 4.93687 5.16109 5.16770 5.27302 5.38599 5.55143 5.68860 5.87566 5.95593 5.98911 6.15183 6.17627 6.25475 6.32414 6.48990 6.54221 6.90763 7.00477 7.20371 7.31577 7.65876 7.78093 7.86318 8.00320 8.20512 8.69812 8.95309 9.43151 10.91281 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035979 B = 0.003789 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.043647 B = 7387.731320 C = 7933.602959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.220 3.780 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.357 6.357 14 C 0.452 3.548 15 O -0.521 6.521 16 C -0.107 4.107 17 C -0.058 4.058 18 C 0.137 3.863 19 C -0.169 4.169 20 C -0.075 4.075 21 C -0.184 4.184 22 C 0.103 3.897 23 N -0.480 5.480 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.041 0.959 28 H 0.108 0.892 29 H 0.265 0.735 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.106 7.708 -13.722 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.273 6.273 14 C 0.295 3.705 15 O -0.412 6.412 16 C -0.145 4.145 17 C -0.096 4.096 18 C 0.000 4.000 19 C -0.189 4.189 20 C -0.101 4.101 21 C -0.204 4.204 22 C -0.055 4.055 23 N -0.189 5.189 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.439 7.773 -12.843 18.874 hybrid contribution -0.009 -0.268 -0.240 0.360 sum -11.448 7.505 -13.084 18.936 Atomic orbital electron populations 1.21853 0.98398 0.98906 1.00751 1.22015 0.92638 0.99435 1.03307 1.20659 0.94984 0.88755 0.78839 0.93512 1.21108 0.89808 1.38693 1.06178 0.91295 1.24891 0.99217 0.94815 0.95096 1.69901 1.35251 1.38009 1.09487 0.86240 0.83982 0.77838 0.78208 1.19472 1.20776 1.20754 1.86476 1.34376 1.62430 1.44003 1.23266 0.80783 0.76845 0.89570 1.90596 1.55630 1.58789 1.36136 1.21201 0.97455 1.00785 0.95091 1.20360 0.96405 0.99575 0.93240 1.21333 0.90558 0.92439 0.95694 1.22038 0.97714 1.01834 0.97339 1.21587 0.99399 0.94384 0.94690 1.22125 0.96267 1.00066 1.01939 1.22789 0.94419 0.96978 0.91283 1.67519 1.34523 1.06985 1.09911 0.92803 0.94947 0.94901 0.94036 0.87379 0.92497 0.88740 0.87345 0.88846 0.89353 0.84606 0.84932 0.84975 0.82745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.57 37.16 0.32 -2.80 16 2 C -0.14 -3.41 5.49 -26.74 -0.15 -3.56 16 3 C 0.22 5.93 2.25 -27.89 -0.06 5.86 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.76 8.90 -34.44 -0.31 -15.07 16 6 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.30 11.29 55.43 0.63 -24.67 16 9 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 O -0.36 -8.61 9.81 -39.26 -0.39 -8.99 16 14 C 0.45 9.37 6.41 36.01 0.23 9.60 16 15 O -0.52 -11.82 13.13 -18.75 -0.25 -12.07 16 16 C -0.11 -1.65 5.67 -27.88 -0.16 -1.81 16 17 C -0.06 -0.78 4.90 -27.88 -0.14 -0.92 16 18 C 0.14 1.68 6.18 -82.59 -0.51 1.17 16 19 C -0.17 -1.69 9.71 -39.44 -0.38 -2.07 16 20 C -0.07 -0.62 10.18 -39.28 -0.40 -1.02 16 21 C -0.18 -1.50 10.11 -39.44 -0.40 -1.90 16 22 C 0.10 1.02 11.18 -17.55 -0.20 0.82 16 23 N -0.48 -6.15 9.88 -9.47 -0.09 -6.25 16 24 H 0.05 1.24 7.80 -51.93 -0.40 0.83 16 25 H 0.03 0.68 6.06 -51.93 -0.31 0.36 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.11 1.65 7.95 -51.93 -0.41 1.23 16 32 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.09 1.12 7.83 -51.93 -0.41 0.71 16 34 H 0.14 1.10 7.95 -52.49 -0.42 0.68 16 35 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -31.63 313.30 -7.78 -39.41 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.14 Total: 1.67 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.24 Total: -10.06 kcal Atomic # 7 Polarization: -31.45 SS G_CDS: 0.53 Total: -30.92 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.63 Total: -21.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.63 -7.78 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188035572.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.065 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds