Wall clock time and date at job start Mon Mar 30 2020 06:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47010 * 2 1 4 4 H 1.09006 * 109.46992 * 55.00211 * 3 2 1 5 5 C 1.50698 * 109.47198 * 174.99898 * 3 2 1 6 6 H 1.08005 * 120.00406 * 120.00107 * 5 3 2 7 7 C 1.37881 * 120.00090 * 300.00203 * 5 3 2 8 8 N 1.31515 * 120.00042 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00102 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47176 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47408 * 120.00008 * 9 7 5 12 12 H 1.48496 * 109.47278 * 240.00013 * 9 7 5 13 13 O 1.45195 * 109.47558 * 294.99870 * 3 2 1 14 14 C 1.34230 * 116.99656 * 89.99651 * 13 3 2 15 15 O 1.20825 * 120.00573 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00023 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47263 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47165 * 180.02562 * 17 16 14 19 19 C 1.38223 * 119.62264 * 125.02051 * 18 17 16 20 20 C 1.38628 * 119.16031 * 179.97438 * 19 18 17 21 21 C 1.38672 * 118.42475 * 359.97438 * 20 19 18 22 22 C 1.38186 * 119.15778 * 0.02562 * 21 20 19 23 23 N 1.31856 * 119.61279 * 304.99522 * 18 17 16 24 24 H 1.08998 * 109.47579 * 299.99591 * 1 2 3 25 25 H 1.08995 * 109.47228 * 60.00133 * 1 2 3 26 26 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47110 * 240.00156 * 2 1 3 28 28 H 1.09005 * 109.47205 * 119.99867 * 2 1 3 29 29 H 0.96995 * 119.99832 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47133 * 60.00247 * 16 14 13 31 31 H 1.08999 * 109.47373 * 300.00263 * 16 14 13 32 32 H 1.08998 * 109.47414 * 60.00331 * 17 16 14 33 33 H 1.09005 * 109.47187 * 299.99604 * 17 16 14 34 34 H 1.07995 * 120.41821 * 359.95030 * 19 18 17 35 35 H 1.08006 * 120.78822 * 180.02562 * 20 19 18 36 36 H 1.07993 * 120.42192 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.60956 * 180.27218 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0049 0.8800 1.3812 10 1 6.5988 1.5442 0.1931 11 1 6.4000 1.6157 2.6092 12 1 6.4962 -0.5189 1.4627 13 8 1.6559 2.0917 -1.2406 14 6 0.4727 2.7254 -1.2559 15 8 -0.2190 2.7376 -0.2652 16 6 0.0069 3.4217 -2.5086 17 6 -1.3613 4.0594 -2.2590 18 6 -1.8273 4.7551 -3.5119 19 6 -3.0576 4.4343 -4.0542 20 6 -3.4770 5.0805 -5.2067 21 6 -2.6399 6.0301 -5.7729 22 6 -1.4238 6.2983 -5.1740 23 7 -1.0570 5.6634 -4.0778 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0613 2.9498 30 1 -0.0721 2.6971 -3.3191 31 1 0.7238 4.1959 -2.7820 32 1 -1.2820 4.7841 -1.4487 33 1 -2.0785 3.2854 -1.9854 34 1 -3.6839 3.6892 -3.5863 35 1 -4.4335 4.8505 -5.6525 36 1 -2.9343 6.5528 -6.6709 37 1 -0.7681 7.0396 -5.6063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188035572.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:20 Heat of formation + Delta-G solvation = -89.306740 kcal Electronic energy + Delta-G solvation = -19213.956258 eV Core-core repulsion = 16148.002904 eV Total energy + Delta-G solvation = -3065.953353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48151 -40.95480 -37.77921 -35.49481 -35.13931 -33.35499 -33.23214 -31.24015 -29.31901 -26.67214 -25.10187 -24.36638 -23.02428 -22.02778 -21.07610 -18.91099 -18.54930 -17.65456 -17.49595 -17.07428 -16.90882 -16.36806 -16.07285 -15.47442 -14.80623 -14.71742 -14.65807 -14.17902 -13.71948 -13.68744 -13.38589 -13.30697 -13.08106 -12.96101 -12.81103 -12.56929 -12.42960 -12.19783 -12.13086 -11.74829 -11.43540 -11.22174 -10.80859 -10.76467 -10.52181 -10.32002 -9.87245 -8.27567 -6.44221 0.19415 0.41656 1.40167 1.41683 1.42632 1.55942 2.07615 2.42858 2.89462 3.01767 3.36400 3.78466 3.86111 4.07581 4.14533 4.21887 4.29782 4.34344 4.39022 4.41484 4.52000 4.64242 4.73590 4.84144 4.85960 4.93893 5.05951 5.10409 5.23315 5.29831 5.32210 5.41341 5.52422 5.68462 5.84489 6.00101 6.16488 6.61195 7.03098 7.10559 7.28130 8.79355 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035979 B = 0.003789 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.043647 B = 7387.731320 C = 7933.602959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.223 3.777 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.063 0.937 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.270 1.270 13 O -0.368 6.368 14 C 0.446 3.554 15 O -0.543 6.543 16 C -0.092 4.092 17 C -0.050 4.050 18 C 0.112 3.888 19 C -0.173 4.173 20 C -0.075 4.075 21 C -0.174 4.174 22 C 0.085 3.915 23 N -0.515 5.515 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.270 0.730 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 7.916 -15.784 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.081 0.919 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.195 1.195 13 O -0.285 6.285 14 C 0.291 3.709 15 O -0.434 6.434 16 C -0.129 4.129 17 C -0.088 4.088 18 C -0.024 4.024 19 C -0.193 4.193 20 C -0.100 4.100 21 C -0.193 4.193 22 C -0.072 4.072 23 N -0.225 5.225 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.169 0.831 35 H 0.183 0.817 36 H 0.183 0.817 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.159 7.987 -14.915 20.835 hybrid contribution 0.120 -0.252 0.347 0.445 sum -12.039 7.735 -14.568 20.421 Atomic orbital electron populations 1.21707 0.96045 1.00642 1.00238 1.21862 0.94713 0.97976 1.02268 1.20368 0.94469 0.89411 0.78749 0.97533 1.21386 0.90725 1.39895 1.06884 0.91853 1.25805 1.04264 0.93871 0.94346 1.70017 1.37339 1.37969 1.09854 0.85165 0.77719 0.78358 0.78338 1.18935 1.20098 1.19549 1.86470 1.36345 1.63132 1.42520 1.24326 0.79405 0.76052 0.91074 1.90581 1.55897 1.59425 1.37510 1.21252 0.98492 1.00664 0.92527 1.20240 0.95249 0.99316 0.93976 1.21121 0.91952 0.93598 0.95766 1.22243 0.96913 1.02200 0.97920 1.22016 1.00578 0.93599 0.93843 1.22517 0.95108 0.99309 1.02364 1.23232 0.95824 0.97293 0.90816 1.67420 1.35767 1.07889 1.11419 0.94525 0.94177 0.91950 0.93648 0.89615 0.92030 0.86626 0.87106 0.90663 0.88749 0.83116 0.81721 0.81696 0.80867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.57 71.98 0.62 -5.06 16 2 C -0.13 -6.67 5.49 30.59 0.17 -6.50 16 3 C 0.22 12.47 2.25 29.85 0.07 12.54 16 4 H 0.01 0.43 7.16 -2.38 -0.02 0.41 16 5 C -0.55 -32.14 8.90 25.60 0.23 -31.91 16 6 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 7 C 0.02 0.94 5.29 84.66 0.45 1.39 16 8 N -0.91 -53.01 11.29 21.45 0.24 -52.77 16 9 Si 0.98 43.70 29.54 68.60 2.03 45.73 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 O -0.37 -18.24 9.81 -51.42 -0.50 -18.75 16 14 C 0.45 18.92 6.41 71.24 0.46 19.38 16 15 O -0.54 -25.46 13.13 21.97 0.29 -25.17 16 16 C -0.09 -2.82 5.67 29.85 0.17 -2.65 16 17 C -0.05 -1.35 4.90 29.85 0.15 -1.20 16 18 C 0.11 2.67 6.18 42.55 0.26 2.93 16 19 C -0.17 -3.09 9.71 22.36 0.22 -2.88 16 20 C -0.07 -0.99 10.18 22.47 0.23 -0.76 16 21 C -0.17 -2.26 10.11 22.36 0.23 -2.03 16 22 C 0.09 1.54 11.18 84.67 0.95 2.48 16 23 N -0.51 -12.82 9.88 -183.88 -1.82 -14.63 16 24 H 0.04 1.71 7.80 -2.39 -0.02 1.69 16 25 H 0.04 1.67 6.06 -2.39 -0.01 1.65 16 26 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 27 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.09 4.79 5.95 -2.38 -0.01 4.77 16 29 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.11 3.39 7.95 -2.39 -0.02 3.37 16 32 H 0.07 2.25 8.10 -2.39 -0.02 2.23 16 33 H 0.09 2.37 7.83 -2.38 -0.02 2.35 16 34 H 0.15 2.11 7.95 -2.91 -0.02 2.09 16 35 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 37 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -70.29 313.30 5.47 -64.81 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 1.05 Total: 15.05 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 4.18 Total: -14.27 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -1.57 Total: -67.40 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.22 Total: -43.92 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -70.29 5.47 -64.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188035572.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.493 kcal (2) G-P(sol) polarization free energy of solvation -70.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds