Wall clock time and date at job start Mon Mar 30 2020 06:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47142 * 2 1 4 4 C 1.52999 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47549 * 55.00072 * 4 3 2 6 6 N 1.46500 * 109.47248 * 294.99744 * 4 3 2 7 7 C 1.38857 * 120.00107 * 154.99874 * 6 4 3 8 8 C 1.39565 * 119.84165 * 359.73538 * 7 6 4 9 9 C 1.36344 * 120.16080 * 179.71493 * 8 7 6 10 10 C 1.40880 * 119.83516 * 0.55606 * 9 8 7 11 11 C 1.41138 * 120.15361 * 179.70102 * 10 9 8 12 12 H 1.08004 * 120.00032 * 204.62771 * 11 10 9 13 13 C 1.39867 * 120.00107 * 24.62199 * 11 10 9 14 14 N 1.30899 * 119.99845 * 17.96256 * 13 11 10 15 15 Si 1.86798 * 119.99753 * 197.95708 * 13 11 10 16 16 H 1.48498 * 109.47452 * 90.00356 * 15 13 11 17 17 H 1.48500 * 109.47105 * 210.00425 * 15 13 11 18 18 H 1.48503 * 109.47212 * 330.00005 * 15 13 11 19 19 C 1.40888 * 119.69044 * 359.71275 * 10 9 8 20 20 C 1.36339 * 119.83355 * 0.02562 * 19 10 9 21 21 C 1.50702 * 109.47083 * 175.00582 * 4 3 2 22 22 O 1.20822 * 120.00341 * 119.99855 * 21 4 3 23 23 O 1.34236 * 119.99588 * 299.99641 * 21 4 3 24 24 H 1.09003 * 109.47343 * 59.99638 * 1 2 3 25 25 H 1.09000 * 109.47096 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46991 * 299.99561 * 1 2 3 27 27 H 1.09001 * 109.46991 * 240.00439 * 2 1 3 28 28 H 1.09003 * 109.47343 * 120.00362 * 2 1 3 29 29 H 1.09001 * 109.46820 * 60.00334 * 3 2 1 30 30 H 1.08995 * 109.47364 * 300.00077 * 3 2 1 31 31 H 0.96999 * 120.00450 * 335.00441 * 6 4 3 32 32 H 1.08006 * 119.91674 * 359.97438 * 8 7 6 33 33 H 1.08006 * 120.07854 * 180.27333 * 9 8 7 34 34 H 0.97001 * 119.99549 * 179.97438 * 14 13 11 35 35 H 1.07996 * 120.07982 * 179.97438 * 19 10 9 36 36 H 1.08001 * 119.91363 * 179.97438 * 20 19 10 37 37 H 0.96700 * 116.99936 * 180.02562 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 7 4.0589 0.8586 1.2509 7 6 5.3178 0.2748 1.2995 8 6 6.1125 0.2412 0.1527 9 6 7.3520 -0.3252 0.1945 10 6 7.8253 -0.8878 1.3963 11 6 9.1048 -1.4814 1.4455 12 1 9.3215 -2.2368 2.1865 13 6 10.0922 -1.0916 0.5348 14 7 9.9715 0.0363 -0.1184 15 14 11.5831 -2.1806 0.2508 16 1 11.2961 -3.1358 -0.8494 17 1 12.7489 -1.3376 -0.1171 18 1 11.8896 -2.9341 1.4932 19 6 7.0153 -0.8552 2.5486 20 6 5.7801 -0.2808 2.4934 21 6 4.0723 2.8579 -0.1243 22 8 4.7673 3.3304 0.7437 23 8 3.7476 3.5938 -1.1991 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.5031 0.8797 2.0456 32 1 5.7463 0.6687 -0.7691 33 1 7.9676 -0.3465 -0.6926 34 1 10.6565 0.3068 -0.7497 35 1 7.3717 -1.2850 3.4730 36 1 5.1580 -0.2555 3.3758 37 1 4.0936 4.4960 -1.2342 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216507510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:48 Heat of formation + Delta-G solvation = -80.642664 kcal Electronic energy + Delta-G solvation = -19550.970812 eV Core-core repulsion = 16485.393161 eV Total energy + Delta-G solvation = -3065.577651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12622 -37.97654 -36.30995 -35.72478 -34.04935 -32.64827 -29.98726 -29.47427 -27.81686 -25.07203 -24.26198 -21.64767 -21.43840 -20.70894 -19.62792 -17.79764 -17.21976 -16.59713 -16.33362 -15.41703 -15.18887 -14.91538 -14.58252 -13.86575 -13.53153 -13.25673 -12.87804 -12.72440 -12.34634 -12.12811 -11.97188 -11.63582 -11.51702 -11.35445 -11.22941 -11.04232 -10.95882 -10.83360 -10.67179 -10.53657 -10.17491 -9.69359 -9.33991 -9.26431 -8.62524 -7.49826 -6.65873 -6.45381 -4.04869 2.53593 2.87234 3.10186 3.14812 3.17124 3.19087 3.46087 4.05481 4.14745 4.70796 4.76985 4.89568 4.99566 5.30131 5.45575 5.52332 5.61651 5.76990 5.80094 5.86232 5.98287 6.14107 6.23281 6.28884 6.29974 6.75140 6.83776 6.90710 7.19125 7.34772 7.49360 7.67484 7.80333 8.13095 8.16730 8.27644 8.44401 8.60755 8.76780 9.05516 9.13504 10.37204 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025923 B = 0.004761 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.854394 B = 5879.332346 C = 6337.807366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.118 4.118 4 C 0.177 3.823 5 H 0.112 0.888 6 N -0.728 5.728 7 C 0.088 3.912 8 C -0.159 4.159 9 C -0.125 4.125 10 C 0.078 3.922 11 C -0.467 4.467 12 H 0.074 0.926 13 C 0.075 3.925 14 N -0.805 5.805 15 Si 0.904 3.096 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.264 1.264 19 C -0.188 4.188 20 C -0.148 4.148 21 C 0.445 3.555 22 O -0.494 6.494 23 O -0.527 6.527 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.391 0.609 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.276 0.724 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.077 2.425 -3.142 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.156 4.156 4 C 0.066 3.934 5 H 0.129 0.871 6 N -0.363 5.363 7 C -0.007 4.007 8 C -0.181 4.181 9 C -0.145 4.145 10 C 0.075 3.925 11 C -0.498 4.498 12 H 0.092 0.908 13 C -0.141 4.141 14 N -0.432 5.432 15 Si 0.729 3.271 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.208 4.208 20 C -0.170 4.170 21 C 0.284 3.716 22 O -0.379 6.379 23 O -0.338 6.338 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.225 0.775 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -13.850 2.328 -3.197 14.404 hybrid contribution 0.961 0.478 0.112 1.079 sum -12.889 2.806 -3.085 13.547 Atomic orbital electron populations 1.21773 0.95905 1.01618 1.01578 1.21497 0.95384 0.95708 1.03316 1.21810 0.91861 0.98603 1.03343 1.20207 0.94499 0.86623 0.92032 0.87082 1.43638 1.17559 1.65349 1.09802 1.17254 0.86119 1.02360 0.95006 1.20033 0.96346 1.06595 0.95115 1.20905 0.93570 1.01412 0.98637 1.17504 0.92790 0.91814 0.90342 1.19397 0.95665 1.20284 1.14420 0.90827 1.25813 0.99533 0.94210 0.94536 1.69867 1.33932 1.17991 1.21449 0.86388 0.80418 0.80682 0.79592 1.19512 1.20582 1.18826 1.20546 0.95611 1.07251 0.97402 1.19774 0.97436 1.05144 0.94659 1.25242 0.77818 0.90049 0.78535 1.90729 1.34359 1.72052 1.40788 1.84572 1.72581 1.30537 1.46137 0.92840 0.92687 0.92910 0.91522 0.90988 0.91381 0.89816 0.77543 0.89976 0.86382 0.91282 0.88929 0.89442 0.74171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.23 5.82 -26.73 -0.16 -1.38 16 3 C -0.12 -1.27 4.72 -26.73 -0.13 -1.39 16 4 C 0.18 2.60 2.18 -69.08 -0.15 2.45 16 5 H 0.11 1.68 6.44 -51.93 -0.33 1.34 16 6 N -0.73 -12.55 4.19 -53.16 -0.22 -12.77 16 7 C 0.09 1.94 6.55 -83.69 -0.55 1.39 16 8 C -0.16 -3.79 9.07 -39.77 -0.36 -4.15 16 9 C -0.13 -3.34 8.64 -39.26 -0.34 -3.68 16 10 C 0.08 2.15 5.57 -106.79 -0.60 1.55 16 11 C -0.47 -12.81 9.03 -37.87 -0.34 -13.15 16 12 H 0.07 1.95 7.91 -52.48 -0.41 1.53 16 13 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 14 N -0.81 -21.79 10.96 55.54 0.61 -21.18 16 15 Si 0.90 19.40 29.60 -169.99 -5.03 14.37 16 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 19 C -0.19 -4.72 9.74 -39.26 -0.38 -5.10 16 20 C -0.15 -3.37 9.82 -39.77 -0.39 -3.76 16 21 C 0.45 7.24 7.53 36.01 0.27 7.52 16 22 O -0.49 -10.23 17.11 -18.75 -0.32 -10.55 16 23 O -0.53 -6.62 13.23 -39.27 -0.52 -7.14 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.81 7.75 -51.93 -0.40 0.40 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.80 7.99 -51.93 -0.42 0.39 16 31 H 0.39 6.03 8.60 -40.82 -0.35 5.67 16 32 H 0.08 1.79 6.14 -52.48 -0.32 1.46 16 33 H 0.12 3.26 6.16 -52.48 -0.32 2.94 16 34 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 35 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.40 3.53 9.10 45.56 0.41 3.95 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -31.62 315.34 -7.82 -39.43 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.24 Total: 11.81 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -2.84 Total: -18.73 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.39 Total: -33.95 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.84 Total: -17.69 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.62 -7.82 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216507510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.208 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds