Wall clock time and date at job start Mon Mar 30 2020 06:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47142 * 2 1 4 4 C 1.52999 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47549 * 55.00072 * 4 3 2 6 6 N 1.46500 * 109.47248 * 294.99744 * 4 3 2 7 7 C 1.38857 * 120.00107 * 154.99874 * 6 4 3 8 8 C 1.39565 * 119.84165 * 359.73538 * 7 6 4 9 9 C 1.36344 * 120.16080 * 179.71493 * 8 7 6 10 10 C 1.40880 * 119.83516 * 0.55606 * 9 8 7 11 11 C 1.41138 * 120.15361 * 179.70102 * 10 9 8 12 12 H 1.08004 * 120.00032 * 204.62771 * 11 10 9 13 13 C 1.39867 * 120.00107 * 24.62199 * 11 10 9 14 14 N 1.30899 * 119.99845 * 17.96256 * 13 11 10 15 15 Si 1.86798 * 119.99753 * 197.95708 * 13 11 10 16 16 H 1.48498 * 109.47452 * 90.00356 * 15 13 11 17 17 H 1.48500 * 109.47105 * 210.00425 * 15 13 11 18 18 H 1.48503 * 109.47212 * 330.00005 * 15 13 11 19 19 C 1.40888 * 119.69044 * 359.71275 * 10 9 8 20 20 C 1.36339 * 119.83355 * 0.02562 * 19 10 9 21 21 C 1.50702 * 109.47083 * 175.00582 * 4 3 2 22 22 O 1.20822 * 120.00341 * 119.99855 * 21 4 3 23 23 O 1.34236 * 119.99588 * 299.99641 * 21 4 3 24 24 H 1.09003 * 109.47343 * 59.99638 * 1 2 3 25 25 H 1.09000 * 109.47096 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46991 * 299.99561 * 1 2 3 27 27 H 1.09001 * 109.46991 * 240.00439 * 2 1 3 28 28 H 1.09003 * 109.47343 * 120.00362 * 2 1 3 29 29 H 1.09001 * 109.46820 * 60.00334 * 3 2 1 30 30 H 1.08995 * 109.47364 * 300.00077 * 3 2 1 31 31 H 0.96999 * 120.00450 * 335.00441 * 6 4 3 32 32 H 1.08006 * 119.91674 * 359.97438 * 8 7 6 33 33 H 1.08006 * 120.07854 * 180.27333 * 9 8 7 34 34 H 0.97001 * 119.99549 * 179.97438 * 14 13 11 35 35 H 1.07996 * 120.07982 * 179.97438 * 19 10 9 36 36 H 1.08001 * 119.91363 * 179.97438 * 20 19 10 37 37 H 0.96700 * 116.99936 * 180.02562 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 7 4.0589 0.8586 1.2509 7 6 5.3178 0.2748 1.2995 8 6 6.1125 0.2412 0.1527 9 6 7.3520 -0.3252 0.1945 10 6 7.8253 -0.8878 1.3963 11 6 9.1048 -1.4814 1.4455 12 1 9.3215 -2.2368 2.1865 13 6 10.0922 -1.0916 0.5348 14 7 9.9715 0.0363 -0.1184 15 14 11.5831 -2.1806 0.2508 16 1 11.2961 -3.1358 -0.8494 17 1 12.7489 -1.3376 -0.1171 18 1 11.8896 -2.9341 1.4932 19 6 7.0153 -0.8552 2.5486 20 6 5.7801 -0.2808 2.4934 21 6 4.0723 2.8579 -0.1243 22 8 4.7673 3.3304 0.7437 23 8 3.7476 3.5938 -1.1991 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.5031 0.8797 2.0456 32 1 5.7463 0.6687 -0.7691 33 1 7.9676 -0.3465 -0.6926 34 1 10.6565 0.3068 -0.7497 35 1 7.3717 -1.2850 3.4730 36 1 5.1580 -0.2555 3.3758 37 1 4.0936 4.4960 -1.2342 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216507510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:48 Heat of formation + Delta-G solvation = -100.431908 kcal Electronic energy + Delta-G solvation = -19551.828938 eV Core-core repulsion = 16485.393161 eV Total energy + Delta-G solvation = -3066.435777 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.43664 -39.68925 -37.64715 -36.96959 -35.63679 -34.15356 -31.48027 -31.31914 -29.42614 -26.20534 -25.98701 -23.30321 -22.62892 -22.13720 -21.14794 -19.19238 -19.04067 -18.12113 -17.63563 -16.92567 -16.57268 -16.45859 -15.76943 -15.50433 -14.69688 -14.57280 -14.42205 -14.23342 -13.89859 -13.65222 -13.48707 -13.09405 -12.89068 -12.76171 -12.53977 -12.48199 -12.33013 -12.18593 -11.96654 -11.63429 -11.55670 -11.46927 -11.19572 -11.06907 -10.40626 -9.42868 -8.57627 -8.26366 -6.04353 1.06752 1.16104 1.25891 1.39587 1.52702 1.55663 2.10444 2.26778 2.78129 2.84392 3.72578 3.83544 3.96900 4.14356 4.29097 4.44605 4.48986 4.53887 4.68139 4.80275 4.93358 4.99214 5.05421 5.09250 5.24712 5.31243 5.38105 5.42669 5.53853 5.61301 5.66034 5.76722 5.91576 6.16250 6.33951 6.58686 6.79396 7.01950 7.06476 7.09188 7.22617 8.46701 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025923 B = 0.004761 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.854394 B = 5879.332346 C = 6337.807366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.106 4.106 4 C 0.171 3.829 5 H 0.110 0.890 6 N -0.719 5.719 7 C 0.112 3.888 8 C -0.171 4.171 9 C -0.146 4.146 10 C 0.039 3.961 11 C -0.505 4.505 12 H 0.070 0.930 13 C 0.031 3.969 14 N -0.843 5.843 15 Si 0.979 3.021 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.260 1.260 19 C -0.197 4.197 20 C -0.158 4.158 21 C 0.452 3.548 22 O -0.545 6.545 23 O -0.511 6.511 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.403 0.597 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.282 0.718 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.929 2.666 -3.507 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.143 4.143 4 C 0.061 3.939 5 H 0.128 0.872 6 N -0.354 5.354 7 C 0.014 3.986 8 C -0.193 4.193 9 C -0.166 4.166 10 C 0.036 3.964 11 C -0.537 4.537 12 H 0.088 0.912 13 C -0.181 4.181 14 N -0.471 5.471 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.184 1.184 19 C -0.217 4.217 20 C -0.179 4.179 21 C 0.293 3.707 22 O -0.434 6.434 23 O -0.324 6.324 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.239 0.761 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -15.770 2.598 -3.583 16.379 hybrid contribution 1.308 0.529 0.198 1.425 sum -14.461 3.128 -3.385 15.178 Atomic orbital electron populations 1.21739 0.94265 1.02136 1.02366 1.21480 0.96772 0.94981 1.02573 1.21795 0.88367 0.99428 1.04753 1.20507 0.97156 0.85632 0.90584 0.87235 1.43624 1.15795 1.64516 1.11502 1.17347 0.87233 1.00110 0.93946 1.20178 0.95801 1.06648 0.96631 1.20839 0.94718 1.03038 0.97985 1.17833 0.93713 0.93455 0.91421 1.19632 0.96706 1.21356 1.15963 0.91186 1.26654 1.02425 0.95217 0.93759 1.69940 1.35352 1.19508 1.22303 0.85256 0.76484 0.78627 0.79579 1.18744 1.19671 1.18355 1.20771 0.96477 1.07344 0.97080 1.20099 0.97103 1.04547 0.96188 1.25343 0.76574 0.90531 0.78298 1.90727 1.36726 1.73268 1.42713 1.84508 1.71898 1.31801 1.44157 0.91845 0.92390 0.92331 0.91885 0.92212 0.90399 0.87896 0.76137 0.88371 0.88358 0.90775 0.88315 0.86212 0.71901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.12 -2.10 5.82 30.59 0.18 -1.92 16 3 C -0.11 -1.92 4.72 30.59 0.14 -1.77 16 4 C 0.17 4.63 2.18 44.25 0.10 4.73 16 5 H 0.11 3.08 6.44 -2.39 -0.02 3.06 16 6 N -0.72 -23.37 4.19 -322.09 -1.35 -24.71 16 7 C 0.11 4.81 6.55 38.67 0.25 5.06 16 8 C -0.17 -8.17 9.07 22.15 0.20 -7.97 16 9 C -0.15 -8.04 8.64 22.47 0.19 -7.85 16 10 C 0.04 2.19 5.57 -21.27 -0.12 2.07 16 11 C -0.51 -28.85 9.03 23.38 0.21 -28.64 16 12 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 13 C 0.03 1.68 5.13 85.23 0.44 2.12 16 14 N -0.84 -47.21 10.96 21.82 0.24 -46.97 16 15 Si 0.98 40.65 29.60 68.60 2.03 42.68 16 16 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 17 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 19 C -0.20 -10.02 9.74 22.48 0.22 -9.80 16 20 C -0.16 -7.03 9.82 22.15 0.22 -6.81 16 21 C 0.45 13.78 7.53 71.24 0.54 14.32 16 22 O -0.55 -21.95 17.11 21.97 0.38 -21.57 16 23 O -0.51 -11.40 13.23 -51.47 -0.68 -12.09 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.19 7.75 -2.39 -0.02 1.17 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.55 7.99 -2.39 -0.02 1.53 16 31 H 0.40 11.35 8.60 -92.71 -0.80 10.56 16 32 H 0.10 4.26 6.14 -2.91 -0.02 4.24 16 33 H 0.10 5.71 6.16 -2.91 -0.02 5.70 16 34 H 0.28 14.38 8.30 -92.71 -0.77 13.61 16 35 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 36 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.42 6.27 9.10 -74.06 -0.67 5.59 16 Total: -1.00 -70.48 315.34 3.52 -66.95 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.38 Total: 33.46 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 3.28 Total: -37.75 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.11 Total: -71.69 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.31 Total: -33.66 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -70.48 3.52 -66.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216507510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.480 kcal (2) G-P(sol) polarization free energy of solvation -70.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds