Wall clock time and date at job start Mon Mar 30 2020 06:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47065 * 2 1 4 4 C 1.53000 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47011 * 304.99549 * 4 3 2 6 6 N 1.46499 * 109.47059 * 64.99591 * 4 3 2 7 7 C 1.38864 * 119.99502 * 205.00208 * 6 4 3 8 8 C 1.39565 * 119.84409 * 0.26939 * 7 6 4 9 9 C 1.36340 * 120.15805 * 180.28067 * 8 7 6 10 10 C 1.40882 * 119.83821 * 359.47281 * 9 8 7 11 11 C 1.41135 * 120.15621 * 180.27304 * 10 9 8 12 12 H 1.08004 * 119.99804 * 154.52858 * 11 10 9 13 13 C 1.39864 * 120.00035 * 334.53538 * 11 10 9 14 14 N 1.30904 * 120.00281 * 343.05418 * 13 11 10 15 15 Si 1.86802 * 119.99788 * 163.05533 * 13 11 10 16 16 H 1.48498 * 109.47168 * 90.00015 * 15 13 11 17 17 H 1.48508 * 109.46901 * 210.00160 * 15 13 11 18 18 H 1.48503 * 109.46977 * 329.99686 * 15 13 11 19 19 C 1.40893 * 119.68976 * 0.25476 * 10 9 8 20 20 C 1.36339 * 119.83242 * 0.02562 * 19 10 9 21 21 C 1.50702 * 109.47166 * 184.99429 * 4 3 2 22 22 O 1.20816 * 120.00375 * 239.99774 * 21 4 3 23 23 O 1.34232 * 119.99473 * 59.99719 * 21 4 3 24 24 H 1.09001 * 109.47322 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47298 * 300.00737 * 1 2 3 26 26 H 1.09003 * 109.47182 * 60.00529 * 1 2 3 27 27 H 1.08992 * 109.47398 * 239.99252 * 2 1 3 28 28 H 1.09003 * 109.46449 * 119.99343 * 2 1 3 29 29 H 1.08992 * 109.47623 * 59.99390 * 3 2 1 30 30 H 1.09003 * 109.46688 * 299.99773 * 3 2 1 31 31 H 0.97000 * 120.00329 * 24.99849 * 6 4 3 32 32 H 1.07998 * 119.92222 * 0.02562 * 8 7 6 33 33 H 1.08004 * 120.08036 * 179.74867 * 9 8 7 34 34 H 0.96996 * 119.99982 * 179.97438 * 14 13 11 35 35 H 1.07994 * 120.07931 * 180.02562 * 19 10 9 36 36 H 1.08001 * 119.91931 * 179.97438 * 20 19 10 37 37 H 0.96703 * 116.99206 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9329 0.8532 0.8428 6 7 4.0588 0.8585 -1.2508 7 6 5.3179 0.2747 -1.2993 8 6 6.1125 0.2412 -0.1524 9 6 7.3519 -0.3252 -0.1942 10 6 7.8255 -0.8874 -1.3960 11 6 9.1052 -1.4807 -1.4453 12 1 9.3180 -2.2455 -2.1776 13 6 10.0978 -1.0782 -0.5459 14 7 9.9705 0.0486 0.1082 15 14 11.6050 -2.1486 -0.2778 16 1 12.6669 -1.7580 -1.2396 17 1 12.1019 -1.9654 1.1096 18 1 11.2444 -3.5734 -0.4903 19 6 7.0156 -0.8551 -2.5484 20 6 5.7805 -0.2802 -2.4934 21 6 4.0723 2.8580 0.1243 22 8 4.7673 3.3304 -0.7437 23 8 3.7474 3.5938 1.1990 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8898 28 1 1.8932 -0.5138 0.8901 29 1 1.6766 1.9564 0.8898 30 1 1.6766 1.9563 -0.8900 31 1 3.5030 0.8795 -2.0455 32 1 5.7463 0.6686 0.7694 33 1 7.9674 -0.3469 0.6931 34 1 10.6587 0.3275 0.7322 35 1 7.3722 -1.2845 -3.4729 36 1 5.1586 -0.2542 -3.3760 37 1 4.0935 4.4961 1.2340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216507557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:51 Heat of formation + Delta-G solvation = -80.566963 kcal Electronic energy + Delta-G solvation = -19550.776308 eV Core-core repulsion = 16485.201940 eV Total energy + Delta-G solvation = -3065.574368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12773 -37.97704 -36.30965 -35.72585 -34.04525 -32.64397 -29.98587 -29.47564 -27.81404 -25.07215 -24.26049 -21.64785 -21.43868 -20.70771 -19.62884 -17.79801 -17.21702 -16.59690 -16.33448 -15.41635 -15.18901 -14.91154 -14.58245 -13.86621 -13.53230 -13.25720 -12.87601 -12.72413 -12.34312 -12.12658 -11.97290 -11.63719 -11.51212 -11.35603 -11.22993 -11.01637 -10.95701 -10.84943 -10.67804 -10.53635 -10.17347 -9.70613 -9.34240 -9.25937 -8.62111 -7.49854 -6.64425 -6.44844 -4.04969 2.53585 2.87656 3.10159 3.14996 3.15278 3.21219 3.45775 4.05867 4.14617 4.70826 4.77743 4.89586 4.99511 5.30114 5.45538 5.52316 5.61581 5.76968 5.80054 5.86159 5.98269 6.14067 6.23243 6.28878 6.29965 6.75092 6.83669 6.90646 7.19129 7.34961 7.49290 7.67606 7.80328 8.13072 8.16728 8.27614 8.44492 8.60635 8.76836 9.05845 9.13590 10.38228 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.004759 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.542877 B = 5882.125467 C = 6344.614156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.118 4.118 4 C 0.177 3.823 5 H 0.112 0.888 6 N -0.728 5.728 7 C 0.089 3.911 8 C -0.160 4.160 9 C -0.124 4.124 10 C 0.078 3.922 11 C -0.467 4.467 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.807 5.807 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.187 4.187 20 C -0.149 4.149 21 C 0.446 3.554 22 O -0.494 6.494 23 O -0.527 6.527 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.391 0.609 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.276 0.724 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.083 2.426 3.134 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.156 4.156 4 C 0.066 3.934 5 H 0.129 0.871 6 N -0.363 5.363 7 C -0.007 4.007 8 C -0.181 4.181 9 C -0.144 4.144 10 C 0.076 3.924 11 C -0.498 4.498 12 H 0.091 0.909 13 C -0.141 4.141 14 N -0.434 5.434 15 Si 0.728 3.272 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.207 4.207 20 C -0.171 4.171 21 C 0.284 3.716 22 O -0.379 6.379 23 O -0.338 6.338 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.225 0.775 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -13.860 2.326 3.196 14.413 hybrid contribution 0.981 0.502 -0.131 1.109 sum -12.880 2.828 3.065 13.538 Atomic orbital electron populations 1.21774 0.95904 1.01618 1.01578 1.21496 0.95384 0.95707 1.03316 1.21810 0.91860 0.98604 1.03344 1.20208 0.94501 0.86626 0.92032 0.87078 1.43642 1.17558 1.65337 1.09812 1.17261 0.86104 1.02305 0.94999 1.20032 0.96356 1.06622 0.95121 1.20900 0.93521 1.01344 0.98628 1.17502 0.92776 0.91833 0.90328 1.19374 0.95506 1.19717 1.15176 0.90879 1.25807 0.99633 0.94200 0.94452 1.69859 1.33847 1.17918 1.21787 0.86406 0.81223 0.81458 0.78101 1.19764 1.20336 1.18670 1.20556 0.95613 1.07175 0.97401 1.19776 0.97449 1.05179 0.94656 1.25236 0.77819 0.90049 0.78536 1.90728 1.34357 1.72052 1.40788 1.84573 1.72575 1.30536 1.46140 0.92687 0.92846 0.92904 0.90987 0.91522 0.89815 0.91382 0.77537 0.89969 0.86394 0.91300 0.88923 0.89437 0.74170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.23 5.82 -26.73 -0.16 -1.38 16 3 C -0.12 -1.27 4.72 -26.73 -0.13 -1.39 16 4 C 0.18 2.60 2.18 -69.08 -0.15 2.45 16 5 H 0.11 1.67 6.44 -51.93 -0.33 1.34 16 6 N -0.73 -12.55 4.19 -53.15 -0.22 -12.77 16 7 C 0.09 1.96 6.55 -83.69 -0.55 1.41 16 8 C -0.16 -3.80 9.07 -39.77 -0.36 -4.16 16 9 C -0.12 -3.30 8.63 -39.27 -0.34 -3.64 16 10 C 0.08 2.15 5.57 -106.79 -0.59 1.55 16 11 C -0.47 -12.82 9.03 -37.87 -0.34 -13.16 16 12 H 0.07 1.93 7.90 -52.48 -0.41 1.51 16 13 C 0.07 1.94 5.15 -17.34 -0.09 1.85 16 14 N -0.81 -21.86 10.96 55.54 0.61 -21.25 16 15 Si 0.90 19.40 29.59 -169.99 -5.03 14.36 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 19 C -0.19 -4.70 9.74 -39.26 -0.38 -5.08 16 20 C -0.15 -3.38 9.82 -39.77 -0.39 -3.77 16 21 C 0.45 7.24 7.53 36.01 0.27 7.51 16 22 O -0.49 -10.22 17.11 -18.74 -0.32 -10.54 16 23 O -0.53 -6.62 13.23 -39.26 -0.52 -7.14 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.81 7.75 -51.93 -0.40 0.40 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.80 7.99 -51.93 -0.42 0.39 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.39 6.02 8.60 -40.82 -0.35 5.67 16 32 H 0.08 1.79 6.14 -52.49 -0.32 1.46 16 33 H 0.12 3.26 6.19 -52.48 -0.32 2.93 16 34 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 35 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.40 3.53 9.10 45.56 0.41 3.95 16 LS Contribution 315.36 15.07 4.75 4.75 Total: -1.00 -31.65 315.36 -7.82 -39.46 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.24 Total: 11.81 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -2.84 Total: -18.69 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.39 Total: -34.01 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.84 Total: -17.68 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.65 -7.82 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216507557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.103 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds