Wall clock time and date at job start Mon Mar 30 2020 06:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47065 * 2 1 4 4 C 1.53000 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47011 * 304.99549 * 4 3 2 6 6 N 1.46499 * 109.47059 * 64.99591 * 4 3 2 7 7 C 1.38864 * 119.99502 * 205.00208 * 6 4 3 8 8 C 1.39565 * 119.84409 * 0.26939 * 7 6 4 9 9 C 1.36340 * 120.15805 * 180.28067 * 8 7 6 10 10 C 1.40882 * 119.83821 * 359.47281 * 9 8 7 11 11 C 1.41135 * 120.15621 * 180.27304 * 10 9 8 12 12 H 1.08004 * 119.99804 * 154.52858 * 11 10 9 13 13 C 1.39864 * 120.00035 * 334.53538 * 11 10 9 14 14 N 1.30904 * 120.00281 * 343.05418 * 13 11 10 15 15 Si 1.86802 * 119.99788 * 163.05533 * 13 11 10 16 16 H 1.48498 * 109.47168 * 90.00015 * 15 13 11 17 17 H 1.48508 * 109.46901 * 210.00160 * 15 13 11 18 18 H 1.48503 * 109.46977 * 329.99686 * 15 13 11 19 19 C 1.40893 * 119.68976 * 0.25476 * 10 9 8 20 20 C 1.36339 * 119.83242 * 0.02562 * 19 10 9 21 21 C 1.50702 * 109.47166 * 184.99429 * 4 3 2 22 22 O 1.20816 * 120.00375 * 239.99774 * 21 4 3 23 23 O 1.34232 * 119.99473 * 59.99719 * 21 4 3 24 24 H 1.09001 * 109.47322 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47298 * 300.00737 * 1 2 3 26 26 H 1.09003 * 109.47182 * 60.00529 * 1 2 3 27 27 H 1.08992 * 109.47398 * 239.99252 * 2 1 3 28 28 H 1.09003 * 109.46449 * 119.99343 * 2 1 3 29 29 H 1.08992 * 109.47623 * 59.99390 * 3 2 1 30 30 H 1.09003 * 109.46688 * 299.99773 * 3 2 1 31 31 H 0.97000 * 120.00329 * 24.99849 * 6 4 3 32 32 H 1.07998 * 119.92222 * 0.02562 * 8 7 6 33 33 H 1.08004 * 120.08036 * 179.74867 * 9 8 7 34 34 H 0.96996 * 119.99982 * 179.97438 * 14 13 11 35 35 H 1.07994 * 120.07931 * 180.02562 * 19 10 9 36 36 H 1.08001 * 119.91931 * 179.97438 * 20 19 10 37 37 H 0.96703 * 116.99206 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9329 0.8532 0.8428 6 7 4.0588 0.8585 -1.2508 7 6 5.3179 0.2747 -1.2993 8 6 6.1125 0.2412 -0.1524 9 6 7.3519 -0.3252 -0.1942 10 6 7.8255 -0.8874 -1.3960 11 6 9.1052 -1.4807 -1.4453 12 1 9.3180 -2.2455 -2.1776 13 6 10.0978 -1.0782 -0.5459 14 7 9.9705 0.0486 0.1082 15 14 11.6050 -2.1486 -0.2778 16 1 12.6669 -1.7580 -1.2396 17 1 12.1019 -1.9654 1.1096 18 1 11.2444 -3.5734 -0.4903 19 6 7.0156 -0.8551 -2.5484 20 6 5.7805 -0.2802 -2.4934 21 6 4.0723 2.8580 0.1243 22 8 4.7673 3.3304 -0.7437 23 8 3.7474 3.5938 1.1990 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8898 28 1 1.8932 -0.5138 0.8901 29 1 1.6766 1.9564 0.8898 30 1 1.6766 1.9563 -0.8900 31 1 3.5030 0.8795 -2.0455 32 1 5.7463 0.6686 0.7694 33 1 7.9674 -0.3469 0.6931 34 1 10.6587 0.3275 0.7322 35 1 7.3722 -1.2845 -3.4729 36 1 5.1586 -0.2542 -3.3760 37 1 4.0935 4.4961 1.2340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216507557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:50 Heat of formation + Delta-G solvation = -100.386574 kcal Electronic energy + Delta-G solvation = -19551.635751 eV Core-core repulsion = 16485.201940 eV Total energy + Delta-G solvation = -3066.433811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43788 -39.68930 -37.64633 -36.97038 -35.63155 -34.15079 -31.48060 -31.31805 -29.42377 -26.20408 -25.98685 -23.30263 -22.62825 -22.13713 -21.14823 -19.19018 -19.04032 -18.12016 -17.63632 -16.92138 -16.57306 -16.45914 -15.76894 -15.50420 -14.69697 -14.56978 -14.42157 -14.23248 -13.89839 -13.64860 -13.48451 -13.09288 -12.90490 -12.73080 -12.54136 -12.49785 -12.32424 -12.18504 -11.96648 -11.64706 -11.55901 -11.46787 -11.19970 -11.06472 -10.40077 -9.42855 -8.56364 -8.25809 -6.04569 1.07090 1.16145 1.25913 1.39601 1.51407 1.56934 2.10391 2.27100 2.78047 2.85178 3.72564 3.83483 3.96900 4.14362 4.29130 4.44616 4.49007 4.53898 4.68151 4.80254 4.93391 4.99240 5.05440 5.09238 5.24728 5.31291 5.38108 5.42722 5.53889 5.61302 5.66037 5.76878 5.91562 6.16370 6.33967 6.58790 6.79437 7.01952 7.06752 7.09161 7.22585 8.47589 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.004759 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.542877 B = 5882.125467 C = 6344.614156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.106 4.106 4 C 0.171 3.829 5 H 0.110 0.890 6 N -0.719 5.719 7 C 0.113 3.887 8 C -0.171 4.171 9 C -0.144 4.144 10 C 0.038 3.962 11 C -0.506 4.506 12 H 0.070 0.930 13 C 0.031 3.969 14 N -0.845 5.845 15 Si 0.978 3.022 16 H -0.266 1.266 17 H -0.269 1.269 18 H -0.259 1.259 19 C -0.196 4.196 20 C -0.158 4.158 21 C 0.452 3.548 22 O -0.545 6.545 23 O -0.511 6.511 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.403 0.597 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.282 0.718 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.926 2.683 3.486 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.143 4.143 4 C 0.061 3.939 5 H 0.128 0.872 6 N -0.354 5.354 7 C 0.014 3.986 8 C -0.193 4.193 9 C -0.164 4.164 10 C 0.036 3.964 11 C -0.537 4.537 12 H 0.088 0.912 13 C -0.181 4.181 14 N -0.473 5.473 15 Si 0.800 3.200 16 H -0.191 1.191 17 H -0.193 1.193 18 H -0.183 1.183 19 C -0.216 4.216 20 C -0.180 4.180 21 C 0.293 3.707 22 O -0.434 6.434 23 O -0.324 6.324 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.239 0.761 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -15.769 2.613 3.568 16.377 hybrid contribution 1.323 0.547 -0.214 1.448 sum -14.446 3.160 3.354 15.163 Atomic orbital electron populations 1.21740 0.94266 1.02136 1.02366 1.21479 0.96772 0.94980 1.02575 1.21795 0.88366 0.99429 1.04755 1.20508 0.97158 0.85634 0.90586 0.87228 1.43628 1.15794 1.64501 1.11511 1.17353 0.87218 1.00052 0.93939 1.20177 0.95810 1.06678 0.96638 1.20832 0.94665 1.02962 0.97970 1.17832 0.93702 0.93491 0.91411 1.19621 0.96552 1.20771 1.16743 0.91176 1.26652 1.02604 0.95155 0.93672 1.69933 1.35272 1.19428 1.22651 0.85271 0.77055 0.79345 0.78355 1.19053 1.19318 1.18276 1.20781 0.96474 1.07260 0.97083 1.20102 0.97117 1.04583 0.96188 1.25338 0.76575 0.90531 0.78299 1.90725 1.36725 1.73268 1.42715 1.84509 1.71892 1.31799 1.44161 0.92390 0.91853 0.92326 0.92211 0.91883 0.87896 0.90399 0.76131 0.88362 0.88386 0.90803 0.88292 0.86204 0.71900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.12 -2.10 5.82 30.59 0.18 -1.92 16 3 C -0.11 -1.92 4.72 30.59 0.14 -1.77 16 4 C 0.17 4.63 2.18 44.25 0.10 4.73 16 5 H 0.11 3.08 6.44 -2.38 -0.02 3.06 16 6 N -0.72 -23.35 4.19 -322.08 -1.35 -24.70 16 7 C 0.11 4.84 6.55 38.67 0.25 5.10 16 8 C -0.17 -8.19 9.07 22.15 0.20 -7.99 16 9 C -0.14 -7.96 8.63 22.47 0.19 -7.77 16 10 C 0.04 2.18 5.57 -21.27 -0.12 2.06 16 11 C -0.51 -28.88 9.03 23.38 0.21 -28.66 16 12 H 0.07 3.86 7.90 -2.91 -0.02 3.83 16 13 C 0.03 1.65 5.15 85.22 0.44 2.09 16 14 N -0.84 -47.36 10.96 21.82 0.24 -47.12 16 15 Si 0.98 40.66 29.59 68.60 2.03 42.69 16 16 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 17 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 19 C -0.20 -9.98 9.74 22.48 0.22 -9.76 16 20 C -0.16 -7.05 9.82 22.15 0.22 -6.83 16 21 C 0.45 13.78 7.53 71.24 0.54 14.31 16 22 O -0.55 -21.95 17.11 21.99 0.38 -21.57 16 23 O -0.51 -11.40 13.23 -51.44 -0.68 -12.08 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 1.19 7.75 -2.39 -0.02 1.17 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.10 1.55 7.99 -2.39 -0.02 1.53 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.40 11.35 8.60 -92.71 -0.80 10.55 16 32 H 0.10 4.26 6.14 -2.91 -0.02 4.24 16 33 H 0.10 5.70 6.19 -2.91 -0.02 5.68 16 34 H 0.28 14.39 8.30 -92.71 -0.77 13.62 16 35 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.42 6.27 9.10 -74.05 -0.67 5.59 16 Total: -1.00 -70.55 315.36 3.53 -67.03 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.38 Total: 33.46 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 3.28 Total: -37.69 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -1.11 Total: -71.82 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.30 Total: -33.65 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -70.55 3.53 -67.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216507557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.361 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds