Wall clock time and date at job start Mon Mar 30 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46905 * 2 1 4 4 C 1.50702 * 109.46751 * 120.00194 * 2 1 3 5 5 H 1.07998 * 119.99987 * 120.00349 * 4 2 1 6 6 C 1.37877 * 119.99980 * 299.99832 * 4 2 1 7 7 N 1.31510 * 120.00315 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99782 * 359.97438 * 6 4 2 9 9 H 1.48508 * 109.47064 * 90.00522 * 8 6 4 10 10 H 1.48501 * 109.46914 * 210.00056 * 8 6 4 11 11 H 1.48494 * 109.47636 * 330.00386 * 8 6 4 12 12 N 1.46900 * 109.46862 * 239.99876 * 2 1 3 13 13 C 1.46897 * 111.00166 * 306.04836 * 12 2 1 14 14 C 1.46899 * 110.99930 * 70.00486 * 12 2 1 15 15 H 1.09001 * 109.47026 * 299.99049 * 14 12 2 16 16 C 1.50696 * 109.47201 * 59.99842 * 14 12 2 17 17 O 1.20822 * 119.99963 * 359.97438 * 16 14 12 18 18 O 1.34232 * 119.99708 * 179.97438 * 16 14 12 19 19 C 1.50706 * 109.47010 * 179.97438 * 14 12 2 20 20 C 1.38234 * 120.00196 * 140.00087 * 19 14 12 21 21 C 1.38235 * 119.99814 * 179.97438 * 20 19 14 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38243 * 120.00092 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99618 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46356 * 59.99951 * 1 2 3 26 26 H 1.09000 * 109.47357 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46898 * 300.00243 * 1 2 3 28 28 H 0.97001 * 120.00419 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46927 * 183.95675 * 13 12 2 30 30 H 1.09004 * 109.47098 * 303.95441 * 13 12 2 31 31 H 1.08997 * 109.47179 * 63.95595 * 13 12 2 32 32 H 0.96699 * 116.99900 * 179.97438 * 18 16 14 33 33 H 1.08000 * 119.99516 * 0.24808 * 20 19 14 34 34 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.00350 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.00235 * 179.97438 * 23 22 21 37 37 H 1.08005 * 119.99804 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1379 -0.8591 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8021 0.8746 2.6992 10 1 0.9773 1.9953 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 1 0.6793 0.2550 -2.5105 16 6 2.4488 1.4297 -2.3025 17 8 3.0997 1.6945 -1.3196 18 8 2.3455 2.3224 -3.2996 19 6 2.2686 -0.6431 -3.6162 20 6 1.5360 -0.6491 -4.7884 21 6 2.0093 -1.3278 -5.8957 22 6 3.2154 -2.0000 -5.8311 23 6 3.9486 -1.9932 -4.6592 24 6 3.4759 -1.3136 -3.5521 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9038 -0.5275 4.4376 29 1 1.8664 -2.5521 -2.1648 30 1 1.6466 -2.5988 -0.3991 31 1 0.3556 -1.9520 -1.4399 32 1 2.8090 3.1633 -3.1858 33 1 0.5960 -0.1198 -4.8403 34 1 1.4367 -1.3328 -6.8114 35 1 3.5850 -2.5306 -6.6961 36 1 4.8908 -2.5188 -4.6085 37 1 4.0485 -1.3086 -2.6364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220923232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:44 Heat of formation + Delta-G solvation = -33.629296 kcal Electronic energy + Delta-G solvation = -20591.288228 eV Core-core repulsion = 17527.749229 eV Total energy + Delta-G solvation = -3063.538998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47512 -38.89707 -37.21820 -35.57612 -33.14967 -31.58382 -30.81482 -29.22491 -27.75118 -25.27207 -24.16136 -22.46681 -22.39585 -20.74806 -19.18319 -17.75141 -17.02253 -16.49847 -16.23716 -15.69174 -15.18087 -14.74922 -14.59190 -14.07986 -13.55144 -13.39219 -13.24205 -12.85667 -12.71319 -12.48757 -12.21798 -11.91188 -11.60071 -11.33665 -11.18975 -11.13225 -10.90484 -10.74484 -10.47356 -10.17896 -9.75073 -9.50919 -8.94715 -8.80011 -8.60760 -8.48859 -7.50903 -6.01186 -3.97190 1.36748 1.51776 2.58665 3.21121 3.27691 3.40503 3.41886 3.88406 4.44768 4.63922 4.79291 5.03549 5.06047 5.24186 5.30610 5.44978 5.56655 5.63761 5.73448 5.95238 6.03895 6.12298 6.18240 6.19438 6.26230 6.47907 6.52597 6.61709 6.62382 6.74028 6.76791 6.89606 7.08506 7.14814 7.69424 7.81830 7.96622 8.28555 8.67892 9.05758 9.61126 11.12106 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028026 B = 0.006532 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.819992 B = 4285.450877 C = 4667.281398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.164 3.836 3 H 0.068 0.932 4 C -0.491 4.491 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.901 5.901 8 Si 0.883 3.117 9 H -0.282 1.282 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.501 5.501 13 C 0.032 3.968 14 C 0.130 3.870 15 H 0.077 0.923 16 C 0.477 3.523 17 O -0.471 6.471 18 O -0.522 6.522 19 C -0.075 4.075 20 C -0.103 4.103 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.084 4.084 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.263 0.737 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.020 0.980 32 H 0.404 0.596 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 1.051 -18.544 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.057 3.943 3 H 0.086 0.914 4 C -0.529 4.529 5 H 0.100 0.900 6 C -0.131 4.131 7 N -0.540 5.540 8 Si 0.714 3.286 9 H -0.209 1.209 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.226 5.226 13 C -0.115 4.115 14 C 0.020 3.980 15 H 0.095 0.905 16 C 0.316 3.684 17 O -0.355 6.355 18 O -0.334 6.334 19 C -0.075 4.075 20 C -0.121 4.121 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.102 4.102 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.039 0.961 32 H 0.262 0.738 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.823 0.700 -18.041 18.073 hybrid contribution -1.315 1.508 0.297 2.023 sum -2.138 2.208 -17.744 18.009 Atomic orbital electron populations 1.22912 1.02056 1.01187 0.98816 1.20226 0.88244 0.97522 0.88313 0.91408 1.20809 1.31155 1.13412 0.87523 0.89986 1.24854 0.96017 0.96417 0.95826 1.69867 1.45960 1.40391 0.97783 0.86931 0.80355 0.84292 0.77016 1.20885 1.22369 1.19443 1.62098 1.58941 1.02065 0.99474 1.22369 0.96204 0.90212 1.02764 1.20010 0.97601 0.88058 0.92335 0.90529 1.23198 0.79410 0.85817 0.79931 1.90766 1.36875 1.77404 1.30440 1.84517 1.71704 1.29752 1.47448 1.19432 0.95785 0.98924 0.93383 1.20995 0.99700 0.98965 0.92465 1.21016 0.96644 0.98675 0.98201 1.21141 0.95217 0.99563 0.97889 1.21177 1.00089 1.00042 0.93147 1.21256 0.95163 0.94943 0.98843 0.95788 0.92207 0.93408 0.92724 0.92724 0.89372 0.96109 0.73752 0.86147 0.86259 0.86422 0.86066 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.19 7.92 37.16 0.29 -3.89 16 2 C 0.16 3.95 1.50 -68.86 -0.10 3.85 16 3 H 0.07 1.79 4.27 -51.93 -0.22 1.56 16 4 C -0.49 -13.91 8.49 -34.44 -0.29 -14.21 16 5 H 0.08 2.51 7.37 -52.49 -0.39 2.13 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 8 Si 0.88 22.62 24.37 -169.99 -4.14 18.47 16 9 H -0.28 -6.94 6.87 56.52 0.39 -6.56 16 10 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 11 H -0.27 -6.78 6.53 56.52 0.37 -6.41 16 12 N -0.50 -10.30 3.71 -231.08 -0.86 -11.16 16 13 C 0.03 0.59 8.26 60.06 0.50 1.09 16 14 C 0.13 2.25 1.98 -70.02 -0.14 2.11 16 15 H 0.08 1.26 6.48 -51.93 -0.34 0.92 16 16 C 0.48 8.56 7.25 36.00 0.26 8.82 16 17 O -0.47 -10.33 14.64 -18.75 -0.27 -10.61 16 18 O -0.52 -7.16 13.34 -39.26 -0.52 -7.68 16 19 C -0.07 -1.11 3.69 -104.62 -0.39 -1.50 16 20 C -0.10 -1.30 9.67 -39.58 -0.38 -1.68 16 21 C -0.13 -1.40 10.05 -39.59 -0.40 -1.80 16 22 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 24 C -0.08 -1.24 8.07 -39.58 -0.32 -1.56 16 25 H 0.02 0.45 6.69 -51.93 -0.35 0.10 16 26 H 0.06 1.26 6.41 -51.93 -0.33 0.92 16 27 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.05 0.90 6.12 -51.93 -0.32 0.58 16 30 H 0.09 1.81 6.76 -51.93 -0.35 1.46 16 31 H 0.02 0.36 6.46 -51.93 -0.34 0.02 16 32 H 0.40 3.77 9.10 45.56 0.41 4.19 16 33 H 0.12 1.34 8.04 -52.49 -0.42 0.91 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.14 2.27 7.72 -52.48 -0.41 1.87 16 LS Contribution 294.13 15.07 4.43 4.43 Total: -1.00 -33.25 294.13 -6.12 -39.36 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -3.66 Total: 4.74 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.86 Total: -10.47 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.08 Total: -38.26 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.80 Total: -18.29 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.14 Total: 18.47 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.25 -6.12 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220923232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.736 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds