Wall clock time and date at job start Mon Mar 30 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46905 * 2 1 4 4 C 1.50702 * 109.46751 * 120.00194 * 2 1 3 5 5 H 1.07998 * 119.99987 * 120.00349 * 4 2 1 6 6 C 1.37877 * 119.99980 * 299.99832 * 4 2 1 7 7 N 1.31510 * 120.00315 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99782 * 359.97438 * 6 4 2 9 9 H 1.48508 * 109.47064 * 90.00522 * 8 6 4 10 10 H 1.48501 * 109.46914 * 210.00056 * 8 6 4 11 11 H 1.48494 * 109.47636 * 330.00386 * 8 6 4 12 12 N 1.46900 * 109.46862 * 239.99876 * 2 1 3 13 13 C 1.46897 * 111.00166 * 306.04836 * 12 2 1 14 14 C 1.46899 * 110.99930 * 70.00486 * 12 2 1 15 15 H 1.09001 * 109.47026 * 299.99049 * 14 12 2 16 16 C 1.50696 * 109.47201 * 59.99842 * 14 12 2 17 17 O 1.20822 * 119.99963 * 359.97438 * 16 14 12 18 18 O 1.34232 * 119.99708 * 179.97438 * 16 14 12 19 19 C 1.50706 * 109.47010 * 179.97438 * 14 12 2 20 20 C 1.38234 * 120.00196 * 140.00087 * 19 14 12 21 21 C 1.38235 * 119.99814 * 179.97438 * 20 19 14 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38243 * 120.00092 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99618 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46356 * 59.99951 * 1 2 3 26 26 H 1.09000 * 109.47357 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46898 * 300.00243 * 1 2 3 28 28 H 0.97001 * 120.00419 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46927 * 183.95675 * 13 12 2 30 30 H 1.09004 * 109.47098 * 303.95441 * 13 12 2 31 31 H 1.08997 * 109.47179 * 63.95595 * 13 12 2 32 32 H 0.96699 * 116.99900 * 179.97438 * 18 16 14 33 33 H 1.08000 * 119.99516 * 0.24808 * 20 19 14 34 34 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.00350 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.00235 * 179.97438 * 23 22 21 37 37 H 1.08005 * 119.99804 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1379 -0.8591 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8021 0.8746 2.6992 10 1 0.9773 1.9953 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 1 0.6793 0.2550 -2.5105 16 6 2.4488 1.4297 -2.3025 17 8 3.0997 1.6945 -1.3196 18 8 2.3455 2.3224 -3.2996 19 6 2.2686 -0.6431 -3.6162 20 6 1.5360 -0.6491 -4.7884 21 6 2.0093 -1.3278 -5.8957 22 6 3.2154 -2.0000 -5.8311 23 6 3.9486 -1.9932 -4.6592 24 6 3.4759 -1.3136 -3.5521 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9038 -0.5275 4.4376 29 1 1.8664 -2.5521 -2.1648 30 1 1.6466 -2.5988 -0.3991 31 1 0.3556 -1.9520 -1.4399 32 1 2.8090 3.1633 -3.1858 33 1 0.5960 -0.1198 -4.8403 34 1 1.4367 -1.3328 -6.8114 35 1 3.5850 -2.5306 -6.6961 36 1 4.8908 -2.5188 -4.6085 37 1 4.0485 -1.3086 -2.6364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220923232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:44 Heat of formation + Delta-G solvation = -57.862129 kcal Electronic energy + Delta-G solvation = -20592.339042 eV Core-core repulsion = 17527.749229 eV Total energy + Delta-G solvation = -3064.589813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.82141 -39.99925 -38.69076 -36.94630 -34.98276 -33.22548 -31.78800 -30.81311 -29.04951 -27.24735 -25.79487 -23.59616 -23.42934 -22.17653 -20.75812 -19.07230 -18.76682 -17.96722 -17.58177 -17.06816 -16.63962 -16.39076 -15.72733 -15.38864 -15.18752 -14.93834 -14.42535 -14.18363 -14.14435 -13.95148 -13.73475 -13.47101 -13.19004 -12.90436 -12.74733 -12.57242 -12.36254 -11.98757 -11.98171 -11.84204 -11.58199 -11.35015 -10.92625 -10.68259 -9.74586 -9.61756 -9.07573 -8.27227 -6.26714 0.38838 0.57307 1.21666 1.23796 1.32492 1.40932 1.97892 2.30812 2.85918 3.07934 3.24804 3.61745 3.96492 4.22775 4.25981 4.32259 4.38176 4.41252 4.47404 4.57105 4.59890 4.69456 4.74710 4.78550 4.98419 5.08262 5.20226 5.23826 5.36544 5.56229 5.61097 5.68495 5.71180 5.74090 5.97086 6.15912 6.30464 6.59131 6.76486 7.04702 7.35293 8.89931 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028026 B = 0.006532 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.819992 B = 4285.450877 C = 4667.281398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.169 3.831 3 H 0.051 0.949 4 C -0.490 4.490 5 H 0.040 0.960 6 C 0.012 3.988 7 N -0.949 5.949 8 Si 0.945 3.055 9 H -0.261 1.261 10 H -0.298 1.298 11 H -0.262 1.262 12 N -0.520 5.520 13 C 0.042 3.958 14 C 0.130 3.870 15 H 0.094 0.906 16 C 0.482 3.518 17 O -0.522 6.522 18 O -0.504 6.504 19 C -0.091 4.091 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.131 4.131 24 C -0.107 4.107 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.264 0.736 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.425 0.575 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 1.796 -22.183 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.061 3.939 3 H 0.069 0.931 4 C -0.529 4.529 5 H 0.058 0.942 6 C -0.185 4.185 7 N -0.591 5.591 8 Si 0.773 3.227 9 H -0.187 1.187 10 H -0.226 1.226 11 H -0.186 1.186 12 N -0.245 5.245 13 C -0.105 4.105 14 C 0.020 3.980 15 H 0.111 0.889 16 C 0.324 3.676 17 O -0.411 6.411 18 O -0.317 6.317 19 C -0.091 4.091 20 C -0.122 4.122 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.126 4.126 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.286 0.714 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.661 1.455 -21.737 21.947 hybrid contribution -0.627 1.217 1.244 1.850 sum -3.288 2.672 -20.492 20.926 Atomic orbital electron populations 1.22768 0.99896 1.01913 0.99889 1.19912 0.89758 0.96109 0.88097 0.93146 1.21080 1.29898 1.12110 0.89790 0.94198 1.25669 0.97716 0.99620 0.95472 1.70020 1.48125 1.42518 0.98394 0.85916 0.79448 0.80452 0.76851 1.18703 1.22620 1.18646 1.61831 1.59810 1.02913 0.99924 1.22244 0.97121 0.89206 1.01943 1.20070 0.98481 0.87800 0.91607 0.88876 1.23396 0.78305 0.86375 0.79540 1.90755 1.39299 1.78433 1.32575 1.84454 1.71386 1.30403 1.45481 1.19291 0.96417 1.00033 0.93375 1.21217 1.00070 0.99057 0.91830 1.21432 0.96582 0.97062 0.98757 1.21537 0.94801 0.98720 0.98023 1.21373 1.00906 0.99603 0.92977 1.21106 0.95648 0.97033 0.98774 0.92316 0.91710 0.94532 0.92673 0.90688 0.92646 0.94567 0.71360 0.84307 0.82919 0.83254 0.84726 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.84 7.92 71.99 0.57 -7.27 16 2 C 0.17 8.23 1.50 44.17 0.07 8.30 16 3 H 0.05 2.69 4.27 -2.39 -0.01 2.68 16 4 C -0.49 -29.02 8.49 25.60 0.22 -28.80 16 5 H 0.04 2.62 7.37 -2.91 -0.02 2.60 16 6 C 0.01 0.71 5.45 84.66 0.46 1.17 16 7 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 8 Si 0.95 47.24 24.37 68.60 1.67 48.91 16 9 H -0.26 -12.09 6.87 99.48 0.68 -11.41 16 10 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 11 H -0.26 -12.66 6.53 99.48 0.65 -12.01 16 12 N -0.52 -21.62 3.71 -885.00 -3.29 -24.90 16 13 C 0.04 1.57 8.26 127.69 1.05 2.62 16 14 C 0.13 4.33 1.98 43.42 0.09 4.42 16 15 H 0.09 2.78 6.48 -2.39 -0.02 2.76 16 16 C 0.48 16.86 7.25 71.23 0.52 17.38 16 17 O -0.52 -23.28 14.64 21.98 0.32 -22.96 16 18 O -0.50 -12.61 13.34 -51.44 -0.69 -13.30 16 19 C -0.09 -2.54 3.69 -19.86 -0.07 -2.61 16 20 C -0.10 -2.21 9.67 22.27 0.22 -2.00 16 21 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 22 C -0.11 -1.99 10.05 22.27 0.22 -1.77 16 23 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 24 C -0.11 -3.12 8.07 22.27 0.18 -2.94 16 25 H 0.06 2.04 6.69 -2.38 -0.02 2.02 16 26 H 0.06 2.63 6.41 -2.39 -0.02 2.61 16 27 H 0.04 1.61 3.27 -2.39 -0.01 1.61 16 28 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 29 H 0.07 2.45 6.12 -2.39 -0.01 2.43 16 30 H 0.05 2.39 6.76 -2.38 -0.02 2.38 16 31 H 0.04 1.21 6.46 -2.39 -0.02 1.20 16 32 H 0.43 6.93 9.10 -74.06 -0.67 6.26 16 33 H 0.14 2.42 8.04 -2.91 -0.02 2.40 16 34 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.10 3.68 7.72 -2.91 -0.02 3.65 16 Total: -1.00 -75.74 294.13 2.63 -73.11 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.35 Total: 16.05 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 3.97 Total: -16.07 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -2.99 Total: -85.74 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.36 Total: -36.26 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.67 Total: 48.91 kcal Total: -75.74 2.63 -73.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220923232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.246 kcal (2) G-P(sol) polarization free energy of solvation -75.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds