Wall clock time and date at job start Mon Mar 30 2020 06:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47069 * 2 1 4 4 C 1.50699 * 109.47364 * 239.99708 * 2 1 3 5 5 H 1.08000 * 120.00054 * 244.25264 * 4 2 1 6 6 C 1.37877 * 119.99736 * 64.25635 * 4 2 1 7 7 N 1.31513 * 120.00572 * 10.71300 * 6 4 2 8 8 Si 1.86807 * 119.99745 * 190.71042 * 6 4 2 9 9 H 1.48494 * 109.47335 * 269.99976 * 8 6 4 10 10 H 1.48501 * 109.46740 * 30.00263 * 8 6 4 11 11 H 1.48503 * 109.46675 * 149.99767 * 8 6 4 12 12 N 1.46899 * 109.47297 * 119.99240 * 2 1 3 13 13 C 1.46904 * 111.00046 * 171.45752 * 12 2 1 14 14 C 1.46898 * 111.00302 * 295.41611 * 12 2 1 15 15 H 1.09005 * 109.46848 * 315.98309 * 14 12 2 16 16 C 1.50697 * 109.47228 * 75.98605 * 14 12 2 17 17 O 1.20823 * 119.99990 * 35.27991 * 16 14 12 18 18 O 1.34226 * 119.99918 * 215.27413 * 16 14 12 19 19 C 1.50707 * 109.47260 * 195.98969 * 14 12 2 20 20 C 1.38230 * 119.99482 * 312.87530 * 19 14 12 21 21 C 1.38238 * 119.99714 * 179.78829 * 20 19 14 22 22 C 1.38241 * 119.99780 * 0.43844 * 21 20 19 23 23 C 1.38223 * 119.99794 * 359.81447 * 22 21 20 24 24 C 1.38229 * 120.00188 * 133.14310 * 19 14 12 25 25 H 1.09004 * 109.46574 * 189.22286 * 1 2 3 26 26 H 1.08995 * 109.46980 * 309.22353 * 1 2 3 27 27 H 1.08994 * 109.47068 * 69.22576 * 1 2 3 28 28 H 0.97001 * 119.99366 * 357.46795 * 7 6 4 29 29 H 1.08997 * 109.46876 * 65.72654 * 13 12 2 30 30 H 1.08999 * 109.46777 * 185.72595 * 13 12 2 31 31 H 1.08998 * 109.46800 * 305.72549 * 13 12 2 32 32 H 0.96700 * 116.99886 * 180.02562 * 18 16 14 33 33 H 1.08000 * 120.00366 * 359.97438 * 20 19 14 34 34 H 1.08005 * 120.00177 * 180.27190 * 21 20 19 35 35 H 1.08000 * 119.99588 * 179.83038 * 22 21 20 36 36 H 1.08005 * 120.00011 * 180.02562 * 23 22 21 37 37 H 1.08008 * 119.99691 * 359.97438 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5955 -1.6269 -1.1327 6 6 1.7732 -0.1905 -2.4808 7 7 1.2772 1.0218 -2.5990 8 14 2.1268 -1.2079 -4.0070 9 1 3.5170 -0.9518 -4.4616 10 1 1.9677 -2.6496 -3.6886 11 1 1.1764 -0.8311 -5.0841 12 7 2.0197 -0.6923 1.1995 13 6 3.4739 -0.8909 1.1360 14 6 1.6403 0.0342 2.4185 15 1 1.8174 1.1003 2.2760 16 6 0.1798 -0.1982 2.7078 17 8 -0.3216 -1.2698 2.4628 18 8 -0.5642 0.7853 3.2379 19 6 2.4670 -0.4618 3.5769 20 6 2.6193 -1.8197 3.7858 21 6 3.3812 -2.2747 4.8457 22 6 3.9834 -1.3718 5.7020 23 6 3.8267 -0.0140 5.4960 24 6 3.0684 0.4411 4.4336 25 1 -0.3632 -1.0145 0.1647 26 1 -0.3633 0.6498 0.7961 27 1 -0.3633 0.3645 -0.9608 28 1 1.0593 1.5361 -1.8059 29 1 3.9744 0.0769 1.1667 30 1 3.7957 -1.4935 1.9853 31 1 3.7304 -1.4034 0.2088 32 1 -1.4960 0.5890 3.4062 33 1 2.1456 -2.5251 3.1192 34 1 3.5039 -3.3357 5.0064 35 1 4.5764 -1.7273 6.5316 36 1 4.2974 0.6915 6.1647 37 1 2.9461 1.5021 4.2726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220923284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:47 Heat of formation + Delta-G solvation = -49.912753 kcal Electronic energy + Delta-G solvation = -20568.449809 eV Core-core repulsion = 17504.204707 eV Total energy + Delta-G solvation = -3064.245102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48162 -38.93543 -36.93709 -35.55488 -33.54701 -31.32578 -30.84426 -29.03407 -27.81837 -24.65945 -23.77642 -22.54503 -22.40907 -20.85227 -19.50321 -17.75222 -17.06406 -16.64721 -16.24480 -15.60817 -15.30198 -14.71957 -14.15166 -13.75831 -13.60804 -13.51307 -13.27069 -12.84891 -12.57705 -12.40161 -12.04142 -11.66482 -11.37862 -11.09643 -11.04686 -10.93198 -10.82174 -10.57111 -10.38241 -10.28111 -10.10752 -9.92251 -8.85155 -8.66213 -8.55570 -8.34540 -7.48325 -6.39614 -4.09741 1.31694 1.47460 2.66693 3.28281 3.41857 3.47924 3.62993 3.84928 4.47950 4.73156 4.81823 5.02614 5.03844 5.21164 5.33059 5.48371 5.55780 5.65218 5.72071 5.97292 6.04148 6.14851 6.24833 6.40691 6.47250 6.56327 6.60785 6.68613 6.73311 6.81258 6.87845 7.01523 7.04955 7.38234 7.67397 7.87566 8.24243 8.35087 8.52584 8.81110 9.59752 10.97061 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.006302 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.228127 B = 4441.906091 C = 5016.116764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.199 3.801 3 H -0.006 1.006 4 C -0.588 4.588 5 H 0.062 0.938 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 1.071 2.929 9 H -0.289 1.289 10 H -0.287 1.287 11 H -0.284 1.284 12 N -0.508 5.508 13 C 0.036 3.964 14 C 0.134 3.866 15 H 0.069 0.931 16 C 0.494 3.506 17 O -0.490 6.490 18 O -0.525 6.525 19 C -0.080 4.080 20 C -0.081 4.081 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.127 4.127 24 C -0.105 4.105 25 H 0.059 0.941 26 H 0.009 0.991 27 H 0.062 0.938 28 H 0.269 0.731 29 H 0.014 0.986 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.403 0.597 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 -1.608 15.037 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.093 3.907 3 H 0.012 0.988 4 C -0.626 4.626 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.545 5.545 8 Si 0.899 3.101 9 H -0.216 1.216 10 H -0.213 1.213 11 H -0.210 1.210 12 N -0.235 5.235 13 C -0.112 4.112 14 C 0.023 3.977 15 H 0.087 0.913 16 C 0.334 3.666 17 O -0.374 6.374 18 O -0.337 6.337 19 C -0.081 4.081 20 C -0.099 4.099 21 C -0.146 4.146 22 C -0.136 4.136 23 C -0.145 4.145 24 C -0.124 4.124 25 H 0.078 0.922 26 H 0.028 0.972 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.261 0.739 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.943 -2.256 13.222 13.732 hybrid contribution -0.307 0.776 1.722 1.913 sum 2.636 -1.480 14.944 15.246 Atomic orbital electron populations 1.22157 0.98337 1.00094 0.99491 1.19512 0.91791 0.92185 0.87247 0.98816 1.21875 1.38496 1.11504 0.90772 0.92031 1.25791 0.94619 0.96643 1.01262 1.70784 1.41353 1.08823 1.33533 0.83518 0.76475 0.75002 0.75078 1.21556 1.21270 1.20993 1.61906 1.13571 1.48191 0.99782 1.22407 0.86404 0.99508 1.02862 1.19973 0.87110 0.98467 0.92114 0.91308 1.23008 0.89328 0.81490 0.72776 1.90669 1.72991 1.26583 1.47189 1.84539 1.27275 1.45408 1.76514 1.19457 0.98925 0.94197 0.95521 1.21233 0.96784 0.95341 0.96563 1.21172 0.98360 0.99707 0.95402 1.21154 0.99715 0.93415 0.99331 1.21036 0.99682 0.95723 0.98058 1.21066 0.97205 0.99430 0.94674 0.92232 0.97221 0.91868 0.91951 0.96748 0.92529 0.89277 0.73868 0.84521 0.85976 0.86271 0.86078 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 7.48 37.16 0.28 -3.24 16 2 C 0.20 5.01 1.67 -68.86 -0.11 4.90 16 3 H -0.01 -0.15 7.34 -51.93 -0.38 -0.53 16 4 C -0.59 -16.15 7.69 -34.44 -0.26 -16.42 16 5 H 0.06 1.69 6.29 -52.49 -0.33 1.36 16 6 C 0.02 0.60 5.09 -17.82 -0.09 0.51 16 7 N -0.91 -26.83 12.97 55.43 0.72 -26.11 16 8 Si 1.07 25.01 29.92 -169.99 -5.09 19.92 16 9 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.51 -11.05 3.99 -231.08 -0.92 -11.97 16 13 C 0.04 0.71 8.49 60.07 0.51 1.22 16 14 C 0.13 2.51 2.22 -70.02 -0.16 2.36 16 15 H 0.07 1.30 7.68 -51.93 -0.40 0.90 16 16 C 0.49 9.27 4.28 36.00 0.15 9.43 16 17 O -0.49 -10.40 15.85 -18.75 -0.30 -10.70 16 18 O -0.53 -8.05 13.19 -39.25 -0.52 -8.56 16 19 C -0.08 -1.29 3.60 -104.62 -0.38 -1.67 16 20 C -0.08 -1.25 7.16 -39.58 -0.28 -1.54 16 21 C -0.13 -1.63 10.05 -39.58 -0.40 -2.02 16 22 C -0.12 -1.34 10.05 -39.59 -0.40 -1.73 16 23 C -0.13 -1.48 10.05 -39.59 -0.40 -1.88 16 24 C -0.11 -1.44 9.67 -39.59 -0.38 -1.82 16 25 H 0.06 1.52 7.03 -51.93 -0.36 1.16 16 26 H 0.01 0.20 5.73 -51.93 -0.30 -0.09 16 27 H 0.06 1.67 6.35 -51.93 -0.33 1.34 16 28 H 0.27 7.96 6.19 -40.82 -0.25 7.70 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 1.00 5.24 -51.93 -0.27 0.72 16 31 H 0.09 1.91 5.85 -51.93 -0.30 1.61 16 32 H 0.40 4.31 9.10 45.56 0.41 4.73 16 33 H 0.14 2.35 7.94 -52.49 -0.42 1.93 16 34 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.12 1.51 7.99 -52.48 -0.42 1.09 16 LS Contribution 299.77 15.07 4.52 4.52 Total: -1.00 -31.98 299.77 -7.34 -39.32 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -3.84 Total: 5.50 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -1.92 Total: -11.92 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.20 Total: -38.09 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.81 Total: -19.26 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.09 Total: 19.92 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.98 -7.34 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220923284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.588 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds