Wall clock time and date at job start Mon Mar 30 2020 07:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35997 * 116.99929 * 2 1 4 4 C 1.38679 * 119.96369 * 0.02566 * 3 2 1 5 5 C 1.38233 * 120.10099 * 179.97438 * 4 3 2 6 6 C 1.38670 * 120.03575 * 359.97438 * 5 4 3 7 7 N 1.40228 * 120.03943 * 180.02562 * 6 5 4 8 8 C 1.39285 * 119.92617 * 0.02651 * 6 5 4 9 9 O 1.36009 * 120.04829 * 180.02562 * 8 6 5 10 10 C 1.42897 * 116.99763 * 184.95973 * 9 8 6 11 11 C 1.52999 * 109.47132 * 183.90222 * 10 9 8 12 12 C 1.50701 * 115.55348 * 275.62224 * 11 10 9 13 13 H 1.08006 * 119.99790 * 114.54662 * 12 11 10 14 14 C 1.37873 * 119.99939 * 294.54574 * 12 11 10 15 15 N 1.31518 * 120.00149 * 352.86205 * 14 12 11 16 16 Si 1.86804 * 119.99873 * 172.86364 * 14 12 11 17 17 H 1.48499 * 109.46951 * 90.00086 * 16 14 12 18 18 H 1.48494 * 109.47018 * 209.99903 * 16 14 12 19 19 H 1.48501 * 109.47045 * 330.00214 * 16 14 12 20 20 C 1.53009 * 117.49853 * 129.91185 * 11 10 9 21 21 C 1.53002 * 117.49732 * 61.29224 * 11 10 9 22 22 C 1.38490 * 119.90040 * 359.95449 * 8 6 5 23 23 H 1.08999 * 109.47261 * 299.99885 * 1 2 3 24 24 H 1.08997 * 109.47122 * 59.99869 * 1 2 3 25 25 H 1.08997 * 109.46766 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.95236 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.97963 * 180.02562 * 5 4 3 28 28 H 0.97004 * 119.99456 * 354.91995 * 7 6 5 29 29 H 0.96999 * 120.00200 * 174.92326 * 7 6 5 30 30 H 1.08998 * 109.47456 * 303.90489 * 10 9 8 31 31 H 1.09004 * 109.47224 * 63.90868 * 10 9 8 32 32 H 0.97000 * 119.99798 * 185.00303 * 15 14 12 33 33 H 1.08998 * 117.49702 * 0.02562 * 20 11 10 34 34 H 1.09001 * 117.49526 * 145.02394 * 20 11 10 35 35 H 1.08997 * 117.50282 * 214.97693 * 21 11 10 36 36 H 1.09004 * 117.49878 * 359.97438 * 21 11 10 37 37 H 1.08001 * 120.02114 * 180.32198 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2904 2.3743 0.0005 5 6 1.9150 3.6075 0.0011 6 6 3.2996 3.6843 0.0016 7 7 3.9333 4.9352 0.0027 8 6 4.0602 2.5175 0.0011 9 8 5.4184 2.5899 0.0021 10 6 6.1337 1.3578 -0.1086 11 6 7.6352 1.6277 0.0077 12 6 8.3232 2.0362 -1.2694 13 1 8.7471 3.0253 -1.3618 14 6 8.4113 1.1474 -2.3197 15 7 8.0224 -0.0989 -2.1609 16 14 9.0831 1.7134 -3.9683 17 1 10.5540 1.5116 -3.9990 18 1 8.4525 0.9246 -5.0569 19 1 8.7771 3.1539 -4.1594 20 6 8.4315 0.7756 0.9982 21 6 8.1430 2.2450 1.3123 22 6 3.4315 1.2835 0.0009 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2119 2.3162 0.0005 27 1 1.3243 4.5116 0.0019 28 1 3.4059 5.7460 -0.0713 29 1 4.8988 4.9897 0.0774 30 1 5.8228 0.6840 0.6897 31 1 5.9208 0.8995 -1.0745 32 1 8.1513 -0.7419 -2.8756 33 1 7.8857 0.0226 1.5666 34 1 9.4531 0.5103 0.7261 35 1 8.9749 2.9463 1.2470 36 1 7.4073 2.4593 2.0876 37 1 4.0194 0.3775 0.0057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224812941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:57 Heat of formation + Delta-G solvation = -23.884369 kcal Electronic energy + Delta-G solvation = -19741.505992 eV Core-core repulsion = 16678.389565 eV Total energy + Delta-G solvation = -3063.116427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.02876 -38.49027 -36.92449 -35.49597 -33.40032 -32.03774 -29.98438 -28.12244 -26.75646 -26.33345 -25.25666 -22.13364 -21.39784 -21.03643 -19.16030 -18.18211 -16.97327 -16.46414 -16.16728 -15.63867 -15.52704 -14.95052 -14.86919 -14.43620 -14.17064 -13.69590 -13.37377 -12.87080 -12.49357 -12.31245 -12.03385 -11.77832 -11.39588 -11.35790 -10.96641 -10.90373 -10.63691 -10.51989 -10.24389 -10.17094 -9.54091 -9.51665 -8.89366 -8.55549 -8.20655 -8.04896 -6.64584 -6.07882 -4.12322 1.73251 1.97789 3.28064 3.35782 3.39866 3.52356 3.93898 4.18972 4.35231 4.38303 5.04407 5.14742 5.20905 5.22001 5.30938 5.44467 5.50673 5.69650 5.82743 5.95036 6.10253 6.25566 6.28359 6.35709 6.49052 6.60615 6.69243 6.71733 6.76889 6.98620 7.01596 7.36424 7.43185 7.66165 7.79408 7.86084 8.23127 8.29649 8.38083 8.86883 9.51818 11.00533 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.005602 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.576213 B = 4997.431658 C = 5210.600116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.321 6.321 3 C 0.107 3.893 4 C -0.211 4.211 5 C -0.137 4.137 6 C 0.153 3.847 7 N -0.878 5.878 8 C 0.117 3.883 9 O -0.303 6.303 10 C 0.108 3.892 11 C 0.046 3.954 12 C -0.489 4.489 13 H 0.062 0.938 14 C 0.069 3.931 15 N -0.882 5.882 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.165 4.165 21 C -0.198 4.198 22 C -0.201 4.201 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.391 0.609 29 H 0.405 0.595 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.883 4.157 4.541 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.235 6.235 3 C 0.061 3.939 4 C -0.230 4.230 5 C -0.161 4.161 6 C 0.051 3.949 7 N -0.421 5.421 8 C 0.067 3.933 9 O -0.216 6.216 10 C 0.033 3.967 11 C 0.046 3.954 12 C -0.527 4.527 13 H 0.080 0.920 14 C -0.134 4.134 15 N -0.519 5.519 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.202 4.202 21 C -0.236 4.236 22 C -0.222 4.222 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.218 0.782 29 H 0.234 0.766 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.743 3.883 4.424 14.037 hybrid contribution 0.197 0.304 -0.946 1.012 sum -12.546 4.187 3.479 13.676 Atomic orbital electron populations 1.22930 0.79329 1.03192 1.00913 1.86064 1.20535 1.27308 1.89571 1.18441 0.91411 0.83821 1.00225 1.20687 0.99092 0.91680 1.11558 1.20044 0.91330 0.97378 1.07335 1.17079 0.90753 0.84721 1.02388 1.42217 1.10087 1.03558 1.86250 1.18355 0.84374 0.91441 0.99167 1.86086 1.12659 1.35847 1.87020 1.22606 0.91595 0.81961 1.00517 1.18744 0.88167 0.98946 0.89568 1.20451 1.36421 0.99695 0.96120 0.91984 1.24995 0.94907 0.94895 0.98587 1.69949 1.46222 1.02304 1.33426 0.86586 0.78870 0.79012 0.83612 1.20619 1.21096 1.19692 1.22754 1.01501 0.91654 1.04338 1.22810 1.03011 0.96397 1.01338 1.20327 0.92373 0.97756 1.11704 0.93112 0.93071 0.88862 0.86105 0.85964 0.78214 0.76584 0.94988 0.90445 0.92787 0.91685 0.89745 0.90335 0.91263 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.06 10.50 -19.73 -0.21 -5.27 16 3 C 0.11 1.81 6.68 -39.25 -0.26 1.55 16 4 C -0.21 -3.06 9.03 -39.42 -0.36 -3.42 16 5 C -0.14 -1.98 9.89 -39.42 -0.39 -2.37 16 6 C 0.15 2.57 6.77 -83.47 -0.57 2.00 16 7 N -0.88 -12.53 9.10 32.55 0.30 -12.24 16 8 C 0.12 2.29 6.69 -39.10 -0.26 2.03 16 9 O -0.30 -6.65 9.31 -19.77 -0.18 -6.83 16 10 C 0.11 2.53 4.62 37.16 0.17 2.70 16 11 C 0.05 1.15 1.55 -155.65 -0.24 0.91 16 12 C -0.49 -13.33 8.82 -34.44 -0.30 -13.63 16 13 H 0.06 1.69 7.82 -52.48 -0.41 1.28 16 14 C 0.07 1.89 5.24 -17.82 -0.09 1.79 16 15 N -0.88 -24.73 12.58 55.43 0.70 -24.03 16 16 Si 0.89 21.14 29.55 -169.99 -5.02 16.12 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.16 -3.80 9.88 -26.73 -0.26 -4.06 16 21 C -0.20 -4.34 9.88 -26.73 -0.26 -4.61 16 22 C -0.20 -3.86 9.01 -39.32 -0.35 -4.22 16 23 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 24 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.12 1.40 6.28 -52.48 -0.33 1.07 16 27 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.39 4.27 8.85 -40.82 -0.36 3.91 16 29 H 0.41 6.15 8.20 -40.82 -0.33 5.82 16 30 H 0.03 0.71 6.96 -51.93 -0.36 0.35 16 31 H 0.08 2.02 7.18 -51.93 -0.37 1.64 16 32 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 33 H 0.06 1.40 8.06 -51.93 -0.42 0.98 16 34 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.14 2.73 6.27 -52.49 -0.33 2.40 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -29.75 314.12 -6.84 -36.59 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.96 Total: 10.92 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.19 Total: -19.99 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.99 Total: -36.27 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.39 Total: -12.10 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.75 -6.84 -36.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224812941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.705 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds