Wall clock time and date at job start Mon Mar 30 2020 07:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35997 * 116.99929 * 2 1 4 4 C 1.38679 * 119.96369 * 0.02566 * 3 2 1 5 5 C 1.38233 * 120.10099 * 179.97438 * 4 3 2 6 6 C 1.38670 * 120.03575 * 359.97438 * 5 4 3 7 7 N 1.40228 * 120.03943 * 180.02562 * 6 5 4 8 8 C 1.39285 * 119.92617 * 0.02651 * 6 5 4 9 9 O 1.36009 * 120.04829 * 180.02562 * 8 6 5 10 10 C 1.42897 * 116.99763 * 184.95973 * 9 8 6 11 11 C 1.52999 * 109.47132 * 183.90222 * 10 9 8 12 12 C 1.50701 * 115.55348 * 275.62224 * 11 10 9 13 13 H 1.08006 * 119.99790 * 114.54662 * 12 11 10 14 14 C 1.37873 * 119.99939 * 294.54574 * 12 11 10 15 15 N 1.31518 * 120.00149 * 352.86205 * 14 12 11 16 16 Si 1.86804 * 119.99873 * 172.86364 * 14 12 11 17 17 H 1.48499 * 109.46951 * 90.00086 * 16 14 12 18 18 H 1.48494 * 109.47018 * 209.99903 * 16 14 12 19 19 H 1.48501 * 109.47045 * 330.00214 * 16 14 12 20 20 C 1.53009 * 117.49853 * 129.91185 * 11 10 9 21 21 C 1.53002 * 117.49732 * 61.29224 * 11 10 9 22 22 C 1.38490 * 119.90040 * 359.95449 * 8 6 5 23 23 H 1.08999 * 109.47261 * 299.99885 * 1 2 3 24 24 H 1.08997 * 109.47122 * 59.99869 * 1 2 3 25 25 H 1.08997 * 109.46766 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.95236 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.97963 * 180.02562 * 5 4 3 28 28 H 0.97004 * 119.99456 * 354.91995 * 7 6 5 29 29 H 0.96999 * 120.00200 * 174.92326 * 7 6 5 30 30 H 1.08998 * 109.47456 * 303.90489 * 10 9 8 31 31 H 1.09004 * 109.47224 * 63.90868 * 10 9 8 32 32 H 0.97000 * 119.99798 * 185.00303 * 15 14 12 33 33 H 1.08998 * 117.49702 * 0.02562 * 20 11 10 34 34 H 1.09001 * 117.49526 * 145.02394 * 20 11 10 35 35 H 1.08997 * 117.50282 * 214.97693 * 21 11 10 36 36 H 1.09004 * 117.49878 * 359.97438 * 21 11 10 37 37 H 1.08001 * 120.02114 * 180.32198 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2904 2.3743 0.0005 5 6 1.9150 3.6075 0.0011 6 6 3.2996 3.6843 0.0016 7 7 3.9333 4.9352 0.0027 8 6 4.0602 2.5175 0.0011 9 8 5.4184 2.5899 0.0021 10 6 6.1337 1.3578 -0.1086 11 6 7.6352 1.6277 0.0077 12 6 8.3232 2.0362 -1.2694 13 1 8.7471 3.0253 -1.3618 14 6 8.4113 1.1474 -2.3197 15 7 8.0224 -0.0989 -2.1609 16 14 9.0831 1.7134 -3.9683 17 1 10.5540 1.5116 -3.9990 18 1 8.4525 0.9246 -5.0569 19 1 8.7771 3.1539 -4.1594 20 6 8.4315 0.7756 0.9982 21 6 8.1430 2.2450 1.3123 22 6 3.4315 1.2835 0.0009 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2119 2.3162 0.0005 27 1 1.3243 4.5116 0.0019 28 1 3.4059 5.7460 -0.0713 29 1 4.8988 4.9897 0.0774 30 1 5.8228 0.6840 0.6897 31 1 5.9208 0.8995 -1.0745 32 1 8.1513 -0.7419 -2.8756 33 1 7.8857 0.0226 1.5666 34 1 9.4531 0.5103 0.7261 35 1 8.9749 2.9463 1.2470 36 1 7.4073 2.4593 2.0876 37 1 4.0194 0.3775 0.0057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224812941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:56 Heat of formation + Delta-G solvation = -42.914646 kcal Electronic energy + Delta-G solvation = -19742.331207 eV Core-core repulsion = 16678.389565 eV Total energy + Delta-G solvation = -3063.941641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.33983 -39.86826 -38.46576 -37.09290 -34.59626 -34.10303 -31.24944 -29.42831 -28.23192 -27.60087 -27.18839 -23.51161 -23.03099 -22.47696 -21.04903 -19.48078 -18.48903 -17.89055 -17.57526 -17.10278 -16.87615 -16.55284 -16.20348 -16.03422 -15.71428 -15.16130 -14.89922 -14.41939 -13.78036 -13.61942 -13.52423 -13.18046 -13.02444 -12.85559 -12.70536 -12.44408 -12.37293 -12.09771 -11.85655 -11.79864 -11.41681 -10.84977 -10.67153 -10.52882 -10.11547 -9.43798 -8.15104 -7.89253 -6.25169 0.43144 0.69892 1.38800 1.41786 1.51200 2.32736 2.40260 2.53305 2.89887 3.10337 3.18970 3.56609 3.90134 4.16100 4.17255 4.27674 4.43175 4.47825 4.48291 4.53299 4.62299 4.62507 4.76883 4.80283 4.92967 4.96582 5.09509 5.16630 5.25481 5.45755 5.50135 5.55395 5.70546 5.77445 6.34152 6.43949 6.55731 6.77816 6.84642 7.18642 7.41424 8.93088 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.005602 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.576213 B = 4997.431658 C = 5210.600116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.347 6.347 3 C 0.095 3.905 4 C -0.194 4.194 5 C -0.126 4.126 6 C 0.146 3.854 7 N -0.870 5.870 8 C 0.075 3.925 9 O -0.315 6.315 10 C 0.129 3.871 11 C 0.012 3.988 12 C -0.506 4.506 13 H 0.054 0.946 14 C 0.025 3.975 15 N -0.909 5.909 16 Si 0.950 3.050 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.164 4.164 21 C -0.173 4.173 22 C -0.223 4.223 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.113 0.887 26 H 0.160 0.840 27 H 0.164 0.836 28 H 0.408 0.592 29 H 0.400 0.600 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.262 0.738 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.031 5.721 4.723 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.261 6.261 3 C 0.049 3.951 4 C -0.213 4.213 5 C -0.149 4.149 6 C 0.043 3.957 7 N -0.414 5.414 8 C 0.026 3.974 9 O -0.229 6.229 10 C 0.054 3.946 11 C 0.012 3.988 12 C -0.543 4.543 13 H 0.073 0.927 14 C -0.176 4.176 15 N -0.546 5.546 16 Si 0.776 3.224 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.202 4.202 21 C -0.210 4.210 22 C -0.243 4.243 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.132 0.868 26 H 0.177 0.823 27 H 0.181 0.819 28 H 0.238 0.762 29 H 0.228 0.772 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.916 5.476 4.615 16.546 hybrid contribution 0.683 -0.175 -0.967 1.197 sum -14.232 5.301 3.648 15.619 Atomic orbital electron populations 1.23307 0.76495 1.05225 1.02361 1.86035 1.23513 1.27077 1.89503 1.18542 0.90799 0.85289 1.00477 1.21136 1.00871 0.90608 1.08684 1.20543 0.90430 0.98989 1.04918 1.17328 0.91665 0.84547 1.02177 1.42183 1.10010 1.03553 1.85671 1.18679 0.83413 0.92928 1.02391 1.86009 1.14310 1.34554 1.88055 1.22085 0.91319 0.82676 0.98480 1.18867 0.88818 1.01174 0.89984 1.20705 1.36608 0.99397 0.97615 0.92749 1.25686 0.95355 0.94945 1.01587 1.70056 1.47202 1.03145 1.34242 0.85664 0.78587 0.78486 0.79672 1.19676 1.21029 1.19426 1.22703 1.00674 0.92838 1.04002 1.22803 1.02911 0.95483 0.99796 1.20303 0.93828 0.96893 1.13296 0.91342 0.91687 0.86846 0.82276 0.81856 0.76151 0.77215 0.94838 0.94148 0.92875 0.90575 0.90921 0.89707 0.89519 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.35 -10.64 10.50 -93.52 -0.98 -11.62 16 3 C 0.10 3.16 6.68 22.48 0.15 3.31 16 4 C -0.19 -4.99 9.03 22.37 0.20 -4.79 16 5 C -0.13 -3.19 9.89 22.37 0.22 -2.96 16 6 C 0.15 4.70 6.77 38.15 0.26 4.96 16 7 N -0.87 -23.38 9.10 -50.94 -0.46 -23.84 16 8 C 0.08 3.01 6.69 22.58 0.15 3.16 16 9 O -0.32 -14.32 9.31 -93.65 -0.87 -15.20 16 10 C 0.13 6.39 4.62 71.98 0.33 6.73 16 11 C 0.01 0.61 1.55 -52.92 -0.08 0.53 16 12 C -0.51 -28.22 8.82 25.60 0.23 -27.99 16 13 H 0.05 3.02 7.82 -2.91 -0.02 3.00 16 14 C 0.02 1.37 5.24 84.65 0.44 1.81 16 15 N -0.91 -52.56 12.58 21.45 0.27 -52.29 16 16 Si 0.95 44.06 29.55 68.60 2.03 46.09 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 C -0.16 -7.70 9.88 30.60 0.30 -7.39 16 21 C -0.17 -7.53 9.88 30.60 0.30 -7.23 16 22 C -0.22 -8.87 9.01 22.44 0.20 -8.67 16 23 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 24 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 25 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.16 2.84 6.28 -2.91 -0.02 2.83 16 27 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 28 H 0.41 7.79 8.85 -92.71 -0.82 6.97 16 29 H 0.40 11.86 8.20 -92.71 -0.76 11.09 16 30 H 0.03 1.59 6.96 -2.39 -0.02 1.57 16 31 H 0.04 2.25 7.18 -2.38 -0.02 2.23 16 32 H 0.26 14.47 8.32 -92.71 -0.77 13.70 16 33 H 0.08 3.33 8.06 -2.39 -0.02 3.31 16 34 H 0.07 3.52 8.14 -2.39 -0.02 3.50 16 35 H 0.08 3.55 8.14 -2.39 -0.02 3.54 16 36 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.11 4.85 6.27 -2.91 -0.02 4.84 16 Total: -1.00 -66.26 314.12 3.32 -62.94 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.48 Total: 30.98 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 3.82 Total: -37.07 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -0.19 Total: -76.13 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -1.85 Total: -26.82 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -66.26 3.32 -62.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224812941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.030 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds