Wall clock time and date at job start Mon Mar 30 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 112.99313 * 2 1 4 4 N 1.46496 * 109.47496 * 309.66362 * 3 2 1 5 5 C 1.39781 * 120.00074 * 180.02562 * 4 3 2 6 6 C 1.38947 * 120.00494 * 359.73121 * 5 4 3 7 7 C 1.38011 * 119.99221 * 179.72384 * 6 5 4 8 8 C 1.38895 * 120.00455 * 0.54705 * 7 6 5 9 9 O 1.35800 * 119.99402 * 179.69821 * 8 7 6 10 10 C 1.34814 * 117.00273 * 174.47876 * 9 8 7 11 11 H 1.08006 * 119.99531 * 5.06276 * 10 9 8 12 12 C 1.38618 * 120.00582 * 185.05993 * 10 9 8 13 13 N 1.31582 * 119.99692 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00153 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47212 * 60.00408 * 14 12 10 16 16 H 1.48498 * 109.46902 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47288 * 300.00216 * 14 12 10 18 18 C 1.38894 * 120.01312 * 359.72990 * 8 7 6 19 19 C 1.38010 * 120.00755 * 359.97438 * 18 8 7 20 20 C 1.54033 * 113.81609 * 228.17717 * 2 1 3 21 21 O 1.44565 * 85.38358 * 268.28737 * 20 2 1 22 22 C 1.44179 * 93.32866 * 335.80715 * 21 20 2 23 23 H 1.08997 * 109.47375 * 60.00208 * 1 2 3 24 24 H 1.09003 * 109.47088 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47446 * 299.99668 * 1 2 3 26 26 H 1.08996 * 109.46873 * 69.67483 * 3 2 1 27 27 H 1.09005 * 109.46402 * 189.66510 * 3 2 1 28 28 H 0.97004 * 119.99371 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.00355 * 359.97438 * 6 5 4 30 30 H 1.08007 * 119.99709 * 180.25194 * 7 6 5 31 31 H 0.96998 * 119.99862 * 179.97438 * 13 12 10 32 32 H 1.08005 * 119.99854 * 179.97438 * 18 8 7 33 33 H 1.07998 * 120.00212 * 179.97438 * 19 18 8 34 34 H 1.08994 * 113.86567 * 22.49786 * 20 2 1 35 35 H 1.09006 * 113.86369 * 154.20180 * 20 2 1 36 36 H 1.09001 * 113.86029 * 270.03951 * 22 21 20 37 37 H 1.09000 * 113.98740 * 138.35248 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1277 1.4085 0.0000 4 7 1.5069 2.2025 -1.0632 5 6 1.8941 3.5311 -1.2601 6 6 2.8637 4.1005 -0.4439 7 6 3.2499 5.4106 -0.6422 8 6 2.6612 6.1632 -1.6503 9 8 3.0370 7.4541 -1.8413 10 6 2.5123 8.0933 -2.9060 11 1 1.7645 7.6056 -3.5139 12 6 2.9322 9.3763 -3.2205 13 7 3.8435 9.9703 -2.4801 14 14 2.2045 10.2621 -4.6954 15 1 0.7368 10.3990 -4.5159 16 1 2.8169 11.6096 -4.8151 17 1 2.4818 9.4816 -5.9279 18 6 1.6878 5.5960 -2.4626 19 6 1.3056 4.2841 -2.2687 20 6 2.1520 -0.9397 -1.0501 21 8 2.1444 -1.9304 0.0026 22 6 2.1520 -0.9397 1.0500 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.9410 1.8823 0.9637 27 1 3.2022 1.3471 -0.1725 28 1 0.8272 1.8061 -1.6305 29 1 3.3180 3.5168 0.3430 30 1 4.0065 5.8520 -0.0104 31 1 4.1377 10.8679 -2.7004 32 1 1.2300 6.1816 -3.2462 33 1 0.5485 3.8433 -2.9002 34 1 1.4876 -1.1724 -1.8822 35 1 3.1512 -0.6437 -1.3700 36 1 3.1512 -0.6439 1.3699 37 1 1.4885 -1.1707 1.8833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227517908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:06 Heat of formation + Delta-G solvation = -8.840022 kcal Electronic energy + Delta-G solvation = -19025.344540 eV Core-core repulsion = 15962.880486 eV Total energy + Delta-G solvation = -3062.464055 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97387 -38.98276 -37.08569 -34.81463 -32.29558 -31.60702 -30.21288 -27.80788 -27.02362 -26.72256 -25.40405 -24.22415 -21.97012 -20.69165 -19.12238 -17.82299 -17.20853 -16.80830 -16.30217 -16.18065 -15.30865 -14.92003 -14.42510 -14.26381 -13.78283 -13.72683 -13.50432 -13.38515 -12.76261 -12.63089 -12.42685 -12.30261 -12.05331 -11.58734 -11.40770 -11.36647 -10.98302 -10.84354 -10.63384 -10.55216 -10.35861 -9.93580 -9.24438 -9.17948 -8.44880 -8.17868 -6.41446 -6.32384 -3.89863 2.19544 2.56566 3.18612 3.19807 3.22343 3.37978 3.59694 4.05059 4.07409 4.43836 4.66237 4.69726 4.81093 5.03892 5.19416 5.20303 5.37333 5.41035 5.44177 5.47728 5.61628 5.64872 5.67727 5.75941 5.82296 5.83696 5.94306 6.20337 6.23289 6.53197 6.85404 6.89554 7.12691 7.31305 7.44065 7.63158 7.95857 8.11839 8.21224 9.13392 9.87748 10.86291 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.053450 B = 0.003325 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.729727 B = 8419.880292 C = 8700.066832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.140 4.140 3 C 0.143 3.857 4 N -0.758 5.758 5 C 0.122 3.878 6 C -0.145 4.145 7 C -0.151 4.151 8 C 0.114 3.886 9 O -0.188 6.188 10 C -0.388 4.388 11 H 0.088 0.912 12 C 0.036 3.964 13 N -0.869 5.869 14 Si 0.938 3.062 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.271 1.271 18 C -0.190 4.190 19 C -0.141 4.141 20 C 0.044 3.956 21 O -0.382 6.382 22 C 0.047 3.953 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.390 0.610 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.268 0.732 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 -18.246 3.937 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.017 3.983 4 N -0.395 5.395 5 C 0.025 3.975 6 C -0.167 4.167 7 C -0.171 4.171 8 C 0.061 3.939 9 O -0.093 6.093 10 C -0.465 4.465 11 H 0.105 0.895 12 C -0.167 4.167 13 N -0.506 5.506 14 Si 0.763 3.237 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.197 1.197 18 C -0.210 4.210 19 C -0.164 4.164 20 C -0.033 4.033 21 O -0.301 6.301 22 C -0.031 4.031 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.224 0.776 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.776 -18.183 4.218 19.267 hybrid contribution -0.636 0.501 -1.010 1.294 sum -5.412 -17.682 3.208 18.768 Atomic orbital electron populations 1.21520 0.91720 1.02277 1.02831 1.23898 0.98016 0.95516 0.96624 1.21137 0.96485 0.88811 0.91820 1.44171 1.47000 1.09838 1.38466 1.17385 0.98111 0.84562 0.97484 1.20161 1.00305 0.95126 1.01144 1.20027 1.03157 0.93410 1.00467 1.19241 0.93885 0.86083 0.94683 1.83987 1.62735 1.17948 1.44641 1.21189 1.22219 0.97979 1.05076 0.89508 1.25212 0.96523 0.96097 0.98819 1.70039 1.28519 1.14102 1.37914 0.85836 0.78938 0.78581 0.80361 1.19674 1.20419 1.19677 1.20990 1.01425 0.95355 1.03211 1.20223 1.02407 0.94447 0.99284 1.24168 1.00757 0.86206 0.92123 1.89730 1.95791 1.27607 1.16982 1.23996 1.00611 0.86221 0.92223 0.91732 0.91813 0.91588 0.92578 0.92664 0.77567 0.87237 0.86537 0.92239 0.85515 0.87694 0.89164 0.89735 0.89847 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 8.82 37.16 0.33 -0.67 16 2 C -0.14 -1.19 1.12 -153.43 -0.17 -1.36 16 3 C 0.14 1.49 4.39 -4.04 -0.02 1.47 16 4 N -0.76 -9.58 5.50 -58.58 -0.32 -9.90 16 5 C 0.12 2.06 6.66 -83.71 -0.56 1.50 16 6 C -0.15 -2.59 9.30 -39.40 -0.37 -2.96 16 7 C -0.15 -3.21 9.98 -39.42 -0.39 -3.60 16 8 C 0.11 2.78 6.65 -39.10 -0.26 2.52 16 9 O -0.19 -5.47 9.76 -0.06 0.00 -5.47 16 10 C -0.39 -11.04 9.48 30.87 0.29 -10.75 16 11 H 0.09 2.28 5.20 -52.48 -0.27 2.01 16 12 C 0.04 1.02 5.49 -17.52 -0.10 0.93 16 13 N -0.87 -26.03 13.67 55.48 0.76 -25.27 16 14 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 C -0.19 -4.15 9.16 -39.42 -0.36 -4.51 16 19 C -0.14 -2.58 9.89 -39.40 -0.39 -2.97 16 20 C 0.04 0.39 8.37 37.64 0.32 0.71 16 21 O -0.38 -4.06 12.38 -35.23 -0.44 -4.50 16 22 C 0.05 0.38 8.36 37.64 0.31 0.70 16 23 H 0.06 0.50 6.64 -51.93 -0.35 0.16 16 24 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.60 7.94 -51.93 -0.41 0.19 16 27 H 0.06 0.59 7.80 -51.93 -0.40 0.19 16 28 H 0.39 4.34 6.93 -40.82 -0.28 4.06 16 29 H 0.11 1.66 6.73 -52.49 -0.35 1.30 16 30 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.13 2.77 5.63 -52.48 -0.30 2.48 16 33 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 34 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.08 0.74 7.99 -51.93 -0.41 0.32 16 36 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -31.84 309.66 -6.59 -38.43 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.87 Total: 5.17 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.36 Total: -18.99 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.44 Total: -35.18 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.44 Total: -9.97 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.84 -6.59 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227517908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.588 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds