Wall clock time and date at job start Mon Mar 30 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 112.99313 * 2 1 4 4 N 1.46496 * 109.47496 * 309.66362 * 3 2 1 5 5 C 1.39781 * 120.00074 * 180.02562 * 4 3 2 6 6 C 1.38947 * 120.00494 * 359.73121 * 5 4 3 7 7 C 1.38011 * 119.99221 * 179.72384 * 6 5 4 8 8 C 1.38895 * 120.00455 * 0.54705 * 7 6 5 9 9 O 1.35800 * 119.99402 * 179.69821 * 8 7 6 10 10 C 1.34814 * 117.00273 * 174.47876 * 9 8 7 11 11 H 1.08006 * 119.99531 * 5.06276 * 10 9 8 12 12 C 1.38618 * 120.00582 * 185.05993 * 10 9 8 13 13 N 1.31582 * 119.99692 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00153 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47212 * 60.00408 * 14 12 10 16 16 H 1.48498 * 109.46902 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47288 * 300.00216 * 14 12 10 18 18 C 1.38894 * 120.01312 * 359.72990 * 8 7 6 19 19 C 1.38010 * 120.00755 * 359.97438 * 18 8 7 20 20 C 1.54033 * 113.81609 * 228.17717 * 2 1 3 21 21 O 1.44565 * 85.38358 * 268.28737 * 20 2 1 22 22 C 1.44179 * 93.32866 * 335.80715 * 21 20 2 23 23 H 1.08997 * 109.47375 * 60.00208 * 1 2 3 24 24 H 1.09003 * 109.47088 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47446 * 299.99668 * 1 2 3 26 26 H 1.08996 * 109.46873 * 69.67483 * 3 2 1 27 27 H 1.09005 * 109.46402 * 189.66510 * 3 2 1 28 28 H 0.97004 * 119.99371 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.00355 * 359.97438 * 6 5 4 30 30 H 1.08007 * 119.99709 * 180.25194 * 7 6 5 31 31 H 0.96998 * 119.99862 * 179.97438 * 13 12 10 32 32 H 1.08005 * 119.99854 * 179.97438 * 18 8 7 33 33 H 1.07998 * 120.00212 * 179.97438 * 19 18 8 34 34 H 1.08994 * 113.86567 * 22.49786 * 20 2 1 35 35 H 1.09006 * 113.86369 * 154.20180 * 20 2 1 36 36 H 1.09001 * 113.86029 * 270.03951 * 22 21 20 37 37 H 1.09000 * 113.98740 * 138.35248 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1277 1.4085 0.0000 4 7 1.5069 2.2025 -1.0632 5 6 1.8941 3.5311 -1.2601 6 6 2.8637 4.1005 -0.4439 7 6 3.2499 5.4106 -0.6422 8 6 2.6612 6.1632 -1.6503 9 8 3.0370 7.4541 -1.8413 10 6 2.5123 8.0933 -2.9060 11 1 1.7645 7.6056 -3.5139 12 6 2.9322 9.3763 -3.2205 13 7 3.8435 9.9703 -2.4801 14 14 2.2045 10.2621 -4.6954 15 1 0.7368 10.3990 -4.5159 16 1 2.8169 11.6096 -4.8151 17 1 2.4818 9.4816 -5.9279 18 6 1.6878 5.5960 -2.4626 19 6 1.3056 4.2841 -2.2687 20 6 2.1520 -0.9397 -1.0501 21 8 2.1444 -1.9304 0.0026 22 6 2.1520 -0.9397 1.0500 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.9410 1.8823 0.9637 27 1 3.2022 1.3471 -0.1725 28 1 0.8272 1.8061 -1.6305 29 1 3.3180 3.5168 0.3430 30 1 4.0065 5.8520 -0.0104 31 1 4.1377 10.8679 -2.7004 32 1 1.2300 6.1816 -3.2462 33 1 0.5485 3.8433 -2.9002 34 1 1.4876 -1.1724 -1.8822 35 1 3.1512 -0.6437 -1.3700 36 1 3.1512 -0.6439 1.3699 37 1 1.4885 -1.1707 1.8833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227517908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:05 Heat of formation + Delta-G solvation = -30.690060 kcal Electronic energy + Delta-G solvation = -19026.292029 eV Core-core repulsion = 15962.880486 eV Total energy + Delta-G solvation = -3063.411544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69661 -40.63864 -38.68670 -36.07647 -34.16493 -32.77633 -31.78306 -29.06573 -27.94206 -27.48816 -27.10119 -25.42033 -23.51807 -22.27389 -19.98152 -19.50831 -18.85379 -18.08518 -17.12635 -16.97890 -16.47416 -16.27336 -16.10900 -15.43875 -15.22449 -15.10949 -14.94453 -14.40903 -14.30284 -14.03236 -13.43627 -13.37648 -13.18802 -13.01650 -12.84983 -12.71645 -12.42952 -12.23869 -12.10291 -11.59230 -11.35809 -11.08251 -10.88553 -10.62102 -10.15957 -9.75815 -8.38490 -7.91983 -6.02240 0.60283 0.94968 1.37231 1.48504 1.53375 2.23549 2.56532 2.75971 2.92623 3.25377 3.27933 3.68301 3.74033 3.96242 4.13414 4.18829 4.20273 4.42864 4.58332 4.59901 4.65426 4.69905 4.72114 4.84683 4.90296 4.98612 5.00204 5.14414 5.15030 5.18857 5.28719 5.32412 5.48452 5.56563 5.80158 5.99564 6.12460 6.61987 7.03481 7.07709 7.94553 8.85936 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.053450 B = 0.003325 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.729727 B = 8419.880292 C = 8700.066832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.130 4.130 3 C 0.138 3.862 4 N -0.742 5.742 5 C 0.153 3.847 6 C -0.145 4.145 7 C -0.156 4.156 8 C 0.061 3.939 9 O -0.243 6.243 10 C -0.407 4.407 11 H 0.098 0.902 12 C -0.028 4.028 13 N -0.928 5.928 14 Si 1.016 2.984 15 H -0.258 1.258 16 H -0.274 1.274 17 H -0.258 1.258 18 C -0.194 4.194 19 C -0.145 4.145 20 C 0.041 3.959 21 O -0.406 6.406 22 C 0.046 3.954 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.402 0.598 29 H 0.143 0.857 30 H 0.112 0.888 31 H 0.270 0.730 32 H 0.118 0.882 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.686 -20.900 3.637 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.130 4.130 3 C 0.014 3.986 4 N -0.378 5.378 5 C 0.052 3.948 6 C -0.167 4.167 7 C -0.176 4.176 8 C 0.011 3.989 9 O -0.151 6.151 10 C -0.484 4.484 11 H 0.116 0.884 12 C -0.225 4.225 13 N -0.567 5.567 14 Si 0.836 3.164 15 H -0.182 1.182 16 H -0.198 1.198 17 H -0.183 1.183 18 C -0.214 4.214 19 C -0.167 4.167 20 C -0.036 4.036 21 O -0.326 6.326 22 C -0.031 4.031 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.239 0.761 29 H 0.161 0.839 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.157 0.843 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.329 -20.942 3.937 22.229 hybrid contribution -0.211 0.911 -0.759 1.204 sum -6.540 -20.031 3.178 21.310 Atomic orbital electron populations 1.21528 0.91126 1.02585 1.03055 1.23808 0.98336 0.94018 0.96882 1.21330 0.96737 0.89506 0.91074 1.44263 1.46599 1.08152 1.38774 1.17504 0.95895 0.85969 0.95419 1.20435 1.00400 0.93840 1.02021 1.20242 1.03006 0.94711 0.99666 1.19754 0.96338 0.85562 0.97213 1.83934 1.64925 1.20429 1.45856 1.21724 1.22576 0.98658 1.05425 0.88427 1.26526 0.96960 0.96728 1.02237 1.70199 1.31096 1.14766 1.40668 0.84680 0.78513 0.77088 0.76123 1.18219 1.19843 1.18285 1.21055 1.00846 0.96878 1.02573 1.20493 1.03052 0.93081 1.00102 1.24282 1.01122 0.85919 0.92256 1.89721 1.95917 1.28849 1.18093 1.24175 1.01528 0.85258 0.92115 0.91479 0.91562 0.91352 0.91986 0.92222 0.76133 0.83938 0.87011 0.92155 0.86413 0.84319 0.88337 0.89622 0.88832 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.82 71.98 0.63 -0.89 16 2 C -0.13 -1.73 1.12 -51.48 -0.06 -1.79 16 3 C 0.14 2.29 4.39 86.38 0.38 2.67 16 4 N -0.74 -15.56 5.50 -339.26 -1.87 -17.42 16 5 C 0.15 4.65 6.66 38.21 0.25 4.90 16 6 C -0.14 -4.83 9.30 22.39 0.21 -4.62 16 7 C -0.16 -6.74 9.98 22.37 0.22 -6.51 16 8 C 0.06 3.08 6.65 22.58 0.15 3.24 16 9 O -0.24 -15.03 9.76 -23.13 -0.23 -15.25 16 10 C -0.41 -24.29 9.48 67.91 0.64 -23.64 16 11 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 12 C -0.03 -1.65 5.49 84.82 0.47 -1.19 16 13 N -0.93 -58.41 13.67 21.61 0.30 -58.11 16 14 Si 1.02 43.82 29.55 68.60 2.03 45.85 16 15 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 17 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 18 C -0.19 -8.50 9.16 22.37 0.20 -8.29 16 19 C -0.15 -4.93 9.89 22.39 0.22 -4.71 16 20 C 0.04 0.60 8.37 72.30 0.61 1.20 16 21 O -0.41 -7.54 12.38 -148.98 -1.84 -9.39 16 22 C 0.05 0.60 8.36 72.29 0.60 1.20 16 23 H 0.07 0.78 6.64 -2.39 -0.02 0.76 16 24 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 1.04 7.94 -2.39 -0.02 1.02 16 27 H 0.06 1.01 7.80 -2.38 -0.02 1.00 16 28 H 0.40 7.03 6.93 -92.71 -0.64 6.39 16 29 H 0.14 3.79 6.73 -2.91 -0.02 3.77 16 30 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 31 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.12 5.26 5.63 -2.91 -0.02 5.24 16 33 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.10 1.26 8.10 -2.39 -0.02 1.24 16 35 H 0.09 1.23 7.99 -2.38 -0.02 1.21 16 36 H 0.09 1.02 8.10 -2.39 -0.02 1.00 16 37 H 0.10 1.09 8.10 -2.39 -0.02 1.07 16 Total: -1.00 -73.34 309.66 3.37 -69.98 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.44 Total: 22.78 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 4.54 Total: -38.43 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.57 Total: -75.53 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -2.07 Total: -24.64 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -73.34 3.37 -69.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227517908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.287 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds