Wall clock time and date at job start Mon Mar 30 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 113.00063 * 2 1 4 4 N 1.46499 * 109.47144 * 50.33503 * 3 2 1 5 5 C 1.39674 * 120.00251 * 179.97438 * 4 3 2 6 6 C 1.39000 * 120.03655 * 0.02562 * 5 4 3 7 7 C 1.38150 * 120.05976 * 179.97438 * 6 5 4 8 8 C 1.38176 * 120.14183 * 0.23408 * 7 6 5 9 9 C 1.38918 * 120.07654 * 359.48826 * 8 7 6 10 10 O 1.35757 * 120.02760 * 180.23102 * 9 8 7 11 11 C 1.34828 * 116.99481 * 174.75826 * 10 9 8 12 12 H 1.07996 * 120.00453 * 5.06478 * 11 10 9 13 13 C 1.38656 * 119.99461 * 185.05914 * 11 10 9 14 14 N 1.31551 * 120.00352 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99814 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47037 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47386 * 119.99974 * 15 13 11 18 18 H 1.48494 * 109.47054 * 240.00316 * 15 13 11 19 19 C 1.38745 * 120.03735 * 179.97438 * 5 4 3 20 20 C 1.54032 * 113.81597 * 131.83195 * 2 1 3 21 21 O 1.44440 * 85.42901 * 91.80767 * 20 2 1 22 22 C 1.44179 * 93.38236 * 24.08847 * 21 20 2 23 23 H 1.08994 * 109.46970 * 59.99621 * 1 2 3 24 24 H 1.08996 * 109.47028 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46790 * 299.99941 * 1 2 3 26 26 H 1.08994 * 109.47545 * 290.33291 * 3 2 1 27 27 H 1.09008 * 109.47155 * 170.33315 * 3 2 1 28 28 H 0.97008 * 119.99890 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.97354 * 359.97190 * 6 5 4 30 30 H 1.08000 * 119.93185 * 179.97438 * 7 6 5 31 31 H 1.08005 * 119.95678 * 179.72067 * 8 7 6 32 32 H 0.97003 * 120.00602 * 179.97438 * 14 13 11 33 33 H 1.08001 * 120.07494 * 0.02562 * 19 5 4 34 34 H 1.09002 * 113.86673 * 205.91769 * 20 2 1 35 35 H 1.09006 * 113.86482 * 337.61492 * 20 2 1 36 36 H 1.08996 * 113.86565 * 221.77356 * 22 21 20 37 37 H 1.09001 * 113.86220 * 90.06077 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4083 0.0000 4 7 1.5071 2.2023 1.0632 5 6 1.8941 3.5299 1.2601 6 6 2.8677 4.0986 0.4473 7 6 3.2504 5.4118 0.6412 8 6 2.6707 6.1623 1.6462 9 6 1.6929 5.6015 2.4582 10 8 1.1206 6.3412 3.4422 11 6 0.1041 5.7735 4.1221 12 1 -0.1663 4.7456 3.9304 13 6 -0.5939 6.5093 5.0675 14 7 -0.2648 7.7614 5.3007 15 14 -2.0018 5.7226 6.0101 16 1 -2.1698 4.3155 5.5658 17 1 -1.7004 5.7495 7.4639 18 1 -3.2541 6.4771 5.7501 19 6 1.3063 4.2827 2.2665 20 6 2.1520 -0.9398 1.0500 21 8 2.1471 -1.9296 -0.0020 22 6 2.1520 -0.9397 -1.0502 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9412 1.8823 -0.9635 27 1 3.2024 1.3469 0.1726 28 1 0.8279 1.8058 1.6311 29 1 3.3255 3.5135 -0.3366 30 1 4.0074 5.8515 0.0087 31 1 2.9754 7.1873 1.7980 32 1 -0.7533 8.2764 5.9618 33 1 0.5493 3.8433 2.8992 34 1 3.1503 -0.6428 1.3714 35 1 1.4868 -1.1743 1.8811 36 1 1.4868 -1.1741 -1.8812 37 1 3.1504 -0.6427 -1.3715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227522814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:09 Heat of formation + Delta-G solvation = -12.143800 kcal Electronic energy + Delta-G solvation = -19296.308672 eV Core-core repulsion = 16233.701354 eV Total energy + Delta-G solvation = -3062.607317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96028 -38.99966 -37.03999 -34.97543 -32.34704 -31.94344 -29.23545 -28.13958 -27.08327 -26.76340 -25.24164 -24.64299 -21.73768 -20.61182 -19.10205 -17.87585 -17.51815 -16.40702 -16.23334 -16.04141 -15.22212 -14.82294 -14.57200 -14.25772 -14.13159 -13.69964 -13.60466 -13.41535 -12.88825 -12.57714 -12.32334 -12.30077 -12.03355 -11.63512 -11.38676 -11.04002 -10.89699 -10.75789 -10.61138 -10.53426 -10.37641 -9.91143 -9.41301 -9.36540 -8.76050 -7.34917 -6.78219 -6.40786 -4.00018 2.38250 2.57080 3.13909 3.14743 3.19985 3.39971 3.58915 3.99257 4.06651 4.45620 4.68831 4.72447 4.83908 5.05603 5.15552 5.23649 5.36923 5.40741 5.46652 5.51983 5.63878 5.69493 5.71172 5.83957 5.86981 5.97650 5.99435 6.28053 6.36135 6.63299 6.65551 7.03612 7.15982 7.39081 7.49132 7.66463 8.00940 8.05419 8.18747 9.05456 9.78219 10.77676 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.004647 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.414750 B = 6023.961143 C = 7134.731011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.141 4.141 3 C 0.141 3.859 4 N -0.752 5.752 5 C 0.248 3.752 6 C -0.280 4.280 7 C -0.040 4.040 8 C -0.236 4.236 9 C 0.189 3.811 10 O -0.179 6.179 11 C -0.389 4.389 12 H 0.091 0.909 13 C 0.038 3.962 14 N -0.864 5.864 15 Si 0.940 3.060 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.302 4.302 20 C 0.044 3.956 21 O -0.382 6.382 22 C 0.048 3.952 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.394 0.606 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.268 0.732 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 -14.348 -10.259 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C 0.016 3.984 4 N -0.385 5.385 5 C 0.147 3.853 6 C -0.302 4.302 7 C -0.059 4.059 8 C -0.257 4.257 9 C 0.135 3.865 10 O -0.082 6.082 11 C -0.465 4.465 12 H 0.108 0.892 13 C -0.166 4.166 14 N -0.499 5.499 15 Si 0.765 3.235 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.325 4.325 20 C -0.033 4.033 21 O -0.300 6.300 22 C -0.030 4.030 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.229 0.771 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.141 0.859 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.968 -14.281 -10.167 17.780 hybrid contribution -0.958 -0.366 0.687 1.235 sum 2.009 -14.647 -9.479 17.562 Atomic orbital electron populations 1.21538 0.91607 1.02403 1.02970 1.23920 0.98130 0.95399 0.96701 1.21198 0.96581 0.88872 0.91750 1.44506 1.46171 1.10072 1.37795 1.17458 0.92040 0.83115 0.92692 1.20059 1.06732 0.97070 1.06380 1.20378 0.96926 0.93098 0.95512 1.20047 1.03882 1.00884 1.00858 1.19071 0.90915 0.89403 0.87124 1.83990 1.44102 1.40242 1.39853 1.21340 1.08977 0.97663 1.18536 0.89163 1.25268 0.98543 0.95508 0.97243 1.70046 1.39744 1.07741 1.32418 0.85673 0.79868 0.78871 0.79125 1.19256 1.20205 1.20193 1.20494 1.10589 0.95797 1.05669 1.24160 1.00765 0.86187 0.92171 1.89708 1.95796 1.27591 1.16950 1.23998 1.00516 0.86243 0.92218 0.91557 0.91709 0.91592 0.92258 0.92358 0.77094 0.87955 0.87223 0.86920 0.92165 0.85864 0.89744 0.89041 0.88962 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.82 37.16 0.33 -0.83 16 2 C -0.14 -1.31 1.12 -153.43 -0.17 -1.48 16 3 C 0.14 1.56 4.39 -4.04 -0.02 1.55 16 4 N -0.75 -10.70 5.49 -58.66 -0.32 -11.02 16 5 C 0.25 4.56 6.65 -83.82 -0.56 4.01 16 6 C -0.28 -4.92 9.31 -39.33 -0.37 -5.29 16 7 C -0.04 -0.74 10.03 -39.64 -0.40 -1.14 16 8 C -0.24 -5.14 9.99 -39.35 -0.39 -5.54 16 9 C 0.19 4.68 6.64 -39.14 -0.26 4.41 16 10 O -0.18 -5.18 9.76 0.03 0.00 -5.18 16 11 C -0.39 -10.97 9.49 30.89 0.29 -10.67 16 12 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 13 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 14 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 15 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 C -0.30 -6.63 9.01 -39.20 -0.35 -6.98 16 20 C 0.04 0.43 8.37 37.64 0.32 0.74 16 21 O -0.38 -4.27 12.38 -35.23 -0.44 -4.70 16 22 C 0.05 0.41 8.37 37.65 0.32 0.72 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 25 H 0.07 0.62 6.64 -51.93 -0.35 0.28 16 26 H 0.06 0.66 7.95 -51.93 -0.41 0.25 16 27 H 0.06 0.64 7.79 -51.92 -0.40 0.24 16 28 H 0.39 5.28 6.93 -40.82 -0.28 4.99 16 29 H 0.10 1.53 6.73 -52.49 -0.35 1.18 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.11 2.39 8.06 -52.48 -0.42 1.96 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.12 2.73 5.64 -52.49 -0.30 2.43 16 34 H 0.08 0.79 7.99 -51.93 -0.41 0.38 16 35 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.08 0.61 8.10 -51.93 -0.42 0.18 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -31.59 309.66 -6.58 -38.18 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.87 Total: 6.78 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -1.36 Total: -19.53 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.44 Total: -35.83 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.44 Total: -9.88 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.59 -6.58 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227522814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.033 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds