Wall clock time and date at job start Mon Mar 30 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 113.00063 * 2 1 4 4 N 1.46499 * 109.47144 * 50.33503 * 3 2 1 5 5 C 1.39674 * 120.00251 * 179.97438 * 4 3 2 6 6 C 1.39000 * 120.03655 * 0.02562 * 5 4 3 7 7 C 1.38150 * 120.05976 * 179.97438 * 6 5 4 8 8 C 1.38176 * 120.14183 * 0.23408 * 7 6 5 9 9 C 1.38918 * 120.07654 * 359.48826 * 8 7 6 10 10 O 1.35757 * 120.02760 * 180.23102 * 9 8 7 11 11 C 1.34828 * 116.99481 * 174.75826 * 10 9 8 12 12 H 1.07996 * 120.00453 * 5.06478 * 11 10 9 13 13 C 1.38656 * 119.99461 * 185.05914 * 11 10 9 14 14 N 1.31551 * 120.00352 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99814 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47037 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47386 * 119.99974 * 15 13 11 18 18 H 1.48494 * 109.47054 * 240.00316 * 15 13 11 19 19 C 1.38745 * 120.03735 * 179.97438 * 5 4 3 20 20 C 1.54032 * 113.81597 * 131.83195 * 2 1 3 21 21 O 1.44440 * 85.42901 * 91.80767 * 20 2 1 22 22 C 1.44179 * 93.38236 * 24.08847 * 21 20 2 23 23 H 1.08994 * 109.46970 * 59.99621 * 1 2 3 24 24 H 1.08996 * 109.47028 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46790 * 299.99941 * 1 2 3 26 26 H 1.08994 * 109.47545 * 290.33291 * 3 2 1 27 27 H 1.09008 * 109.47155 * 170.33315 * 3 2 1 28 28 H 0.97008 * 119.99890 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.97354 * 359.97190 * 6 5 4 30 30 H 1.08000 * 119.93185 * 179.97438 * 7 6 5 31 31 H 1.08005 * 119.95678 * 179.72067 * 8 7 6 32 32 H 0.97003 * 120.00602 * 179.97438 * 14 13 11 33 33 H 1.08001 * 120.07494 * 0.02562 * 19 5 4 34 34 H 1.09002 * 113.86673 * 205.91769 * 20 2 1 35 35 H 1.09006 * 113.86482 * 337.61492 * 20 2 1 36 36 H 1.08996 * 113.86565 * 221.77356 * 22 21 20 37 37 H 1.09001 * 113.86220 * 90.06077 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4083 0.0000 4 7 1.5071 2.2023 1.0632 5 6 1.8941 3.5299 1.2601 6 6 2.8677 4.0986 0.4473 7 6 3.2504 5.4118 0.6412 8 6 2.6707 6.1623 1.6462 9 6 1.6929 5.6015 2.4582 10 8 1.1206 6.3412 3.4422 11 6 0.1041 5.7735 4.1221 12 1 -0.1663 4.7456 3.9304 13 6 -0.5939 6.5093 5.0675 14 7 -0.2648 7.7614 5.3007 15 14 -2.0018 5.7226 6.0101 16 1 -2.1698 4.3155 5.5658 17 1 -1.7004 5.7495 7.4639 18 1 -3.2541 6.4771 5.7501 19 6 1.3063 4.2827 2.2665 20 6 2.1520 -0.9398 1.0500 21 8 2.1471 -1.9296 -0.0020 22 6 2.1520 -0.9397 -1.0502 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9412 1.8823 -0.9635 27 1 3.2024 1.3469 0.1726 28 1 0.8279 1.8058 1.6311 29 1 3.3255 3.5135 -0.3366 30 1 4.0074 5.8515 0.0087 31 1 2.9754 7.1873 1.7980 32 1 -0.7533 8.2764 5.9618 33 1 0.5493 3.8433 2.8992 34 1 3.1503 -0.6428 1.3714 35 1 1.4868 -1.1743 1.8811 36 1 1.4868 -1.1741 -1.8812 37 1 3.1504 -0.6427 -1.3715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227522814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:08 Heat of formation + Delta-G solvation = -33.780412 kcal Electronic energy + Delta-G solvation = -19297.246905 eV Core-core repulsion = 16233.701354 eV Total energy + Delta-G solvation = -3063.545551 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.73570 -40.68690 -38.66523 -36.28545 -34.23833 -33.12743 -30.76659 -29.62020 -27.90631 -27.51054 -27.21781 -25.63927 -23.37577 -22.16711 -20.06709 -19.56688 -19.03262 -17.63997 -17.00941 -16.97991 -16.72515 -16.27542 -16.01160 -15.70899 -15.55382 -15.16969 -14.94418 -14.49054 -14.31717 -14.08114 -13.49229 -13.36809 -13.18842 -12.97541 -12.78761 -12.48737 -12.42430 -12.14502 -12.04150 -11.63026 -11.44323 -11.24208 -10.93023 -10.64823 -10.58380 -9.08752 -8.44712 -8.21939 -6.12955 0.77893 0.93493 1.34639 1.44176 1.52859 2.18699 2.47003 2.73119 2.90499 3.21677 3.28992 3.61027 3.68249 3.91925 4.14095 4.23236 4.40723 4.42431 4.57240 4.61488 4.63881 4.66541 4.75830 4.81053 4.86720 4.95600 5.08686 5.11585 5.15361 5.17643 5.17985 5.27183 5.47687 5.76715 5.82211 6.04577 6.12808 6.60986 6.85469 7.00821 7.84603 8.79215 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.004647 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.414750 B = 6023.961143 C = 7134.731011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.133 4.133 3 C 0.138 3.862 4 N -0.742 5.742 5 C 0.256 3.744 6 C -0.263 4.263 7 C -0.026 4.026 8 C -0.263 4.263 9 C 0.152 3.848 10 O -0.234 6.234 11 C -0.410 4.410 12 H 0.099 0.901 13 C -0.024 4.024 14 N -0.922 5.922 15 Si 1.018 2.982 16 H -0.252 1.252 17 H -0.269 1.269 18 H -0.269 1.269 19 C -0.316 4.316 20 C 0.040 3.960 21 O -0.405 6.405 22 C 0.051 3.949 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.398 0.602 29 H 0.144 0.856 30 H 0.152 0.848 31 H 0.105 0.895 32 H 0.272 0.728 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.352 -16.997 -12.351 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.134 4.134 3 C 0.014 3.986 4 N -0.373 5.373 5 C 0.152 3.848 6 C -0.286 4.286 7 C -0.045 4.045 8 C -0.284 4.284 9 C 0.100 3.900 10 O -0.140 6.140 11 C -0.486 4.486 12 H 0.117 0.883 13 C -0.221 4.221 14 N -0.561 5.561 15 Si 0.838 3.162 16 H -0.175 1.175 17 H -0.194 1.194 18 H -0.194 1.194 19 C -0.340 4.340 20 C -0.037 4.037 21 O -0.325 6.325 22 C -0.026 4.026 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.234 0.766 29 H 0.161 0.839 30 H 0.169 0.831 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.445 -17.002 -12.315 21.274 hybrid contribution -0.910 0.270 1.059 1.422 sum 2.534 -16.732 -11.256 20.324 Atomic orbital electron populations 1.21536 0.91576 1.02588 1.02801 1.23844 0.98075 0.94238 0.97230 1.21439 0.97013 0.89268 0.90870 1.44652 1.45738 1.08645 1.38244 1.17535 0.91406 0.84532 0.91331 1.20558 1.05114 0.96889 1.06020 1.20834 0.96479 0.93136 0.94049 1.20271 1.04470 1.01361 1.02271 1.19650 0.92094 0.90672 0.87539 1.83950 1.45663 1.42162 1.42235 1.21824 1.09397 0.98325 1.19031 0.88323 1.26574 1.01427 0.96046 0.98078 1.70193 1.42010 1.09768 1.34125 0.84538 0.75758 0.78498 0.77435 1.17544 1.19359 1.19355 1.20502 1.11128 0.95360 1.07032 1.24253 1.01130 0.86076 0.92233 1.89698 1.95938 1.28796 1.18024 1.24190 1.01665 0.84860 0.91883 0.91119 0.91414 0.92347 0.91157 0.91296 0.76634 0.83879 0.83067 0.87710 0.91923 0.87001 0.89328 0.88938 0.87580 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.82 71.98 0.63 -1.34 16 2 C -0.13 -2.03 1.12 -51.48 -0.06 -2.09 16 3 C 0.14 2.47 4.39 86.38 0.38 2.85 16 4 N -0.74 -18.92 5.49 -339.49 -1.87 -20.79 16 5 C 0.26 8.85 6.65 38.20 0.25 9.10 16 6 C -0.26 -8.19 9.31 22.43 0.21 -7.98 16 7 C -0.03 -0.89 10.03 22.23 0.22 -0.67 16 8 C -0.26 -11.61 9.99 22.42 0.22 -11.38 16 9 C 0.15 7.79 6.64 22.56 0.15 7.94 16 10 O -0.23 -14.46 9.76 -22.79 -0.22 -14.68 16 11 C -0.41 -24.32 9.49 67.92 0.64 -23.68 16 12 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 13 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 14 N -0.92 -57.49 13.67 21.61 0.30 -57.20 16 15 Si 1.02 43.40 29.55 68.60 2.03 45.43 16 16 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 C -0.32 -14.05 9.01 22.52 0.20 -13.85 16 20 C 0.04 0.67 8.37 72.29 0.61 1.27 16 21 O -0.41 -7.97 12.38 -148.98 -1.84 -9.82 16 22 C 0.05 0.68 8.37 72.30 0.61 1.28 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 25 H 0.06 0.99 6.64 -2.39 -0.02 0.97 16 26 H 0.07 1.19 7.95 -2.39 -0.02 1.17 16 27 H 0.07 1.16 7.79 -2.38 -0.02 1.15 16 28 H 0.40 9.81 6.93 -92.70 -0.64 9.17 16 29 H 0.14 3.37 6.73 -2.91 -0.02 3.35 16 30 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 31 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.11 5.11 5.64 -2.91 -0.02 5.09 16 34 H 0.09 1.41 7.99 -2.39 -0.02 1.39 16 35 H 0.09 1.51 8.10 -2.38 -0.02 1.49 16 36 H 0.11 1.13 8.10 -2.39 -0.02 1.11 16 37 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 Total: -1.00 -73.21 309.66 3.37 -69.84 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.44 Total: 26.70 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 4.54 Total: -39.48 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -1.57 Total: -77.99 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -2.07 Total: -24.50 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -73.21 3.37 -69.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227522814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.056 kcal (2) G-P(sol) polarization free energy of solvation -73.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds