Wall clock time and date at job start Mon Mar 30 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47106 * 2 1 4 4 N 1.46497 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.36901 * 120.00089 * 269.99798 * 4 3 2 6 6 H 1.07994 * 119.99657 * 17.00222 * 5 4 3 7 7 C 1.39024 * 120.00020 * 196.99725 * 5 4 3 8 8 N 1.31386 * 119.99950 * 17.90494 * 7 5 4 9 9 Si 1.86798 * 119.99847 * 197.90463 * 7 5 4 10 10 H 1.48504 * 109.47177 * 90.00218 * 9 7 5 11 11 H 1.48500 * 109.46936 * 210.00017 * 9 7 5 12 12 H 1.48498 * 109.47170 * 330.00211 * 9 7 5 13 13 C 1.34777 * 119.99642 * 90.00143 * 4 3 2 14 14 O 1.21623 * 119.99869 * 241.67995 * 13 4 3 15 15 C 1.47496 * 120.00298 * 61.68264 * 13 4 3 16 16 C 1.39819 * 120.09238 * 30.32049 * 15 13 4 17 17 C 1.37662 * 119.90457 * 179.97438 * 16 15 13 18 18 C 1.39032 * 120.09337 * 0.02562 * 17 16 15 19 19 O 1.35719 * 119.90337 * 179.97438 * 18 17 16 20 20 C 1.38983 * 120.19002 * 0.27087 * 18 17 16 21 21 C 1.37711 * 120.09264 * 359.45303 * 20 18 17 22 22 C 1.50697 * 120.04618 * 180.25590 * 21 20 18 23 23 H 1.08999 * 109.47043 * 299.99905 * 1 2 3 24 24 H 1.09002 * 109.47539 * 60.00089 * 1 2 3 25 25 H 1.09005 * 109.46816 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47043 * 240.00095 * 2 1 3 27 27 H 1.09002 * 109.47539 * 119.99911 * 2 1 3 28 28 H 1.08999 * 109.47092 * 60.00125 * 3 2 1 29 29 H 1.09002 * 109.46849 * 300.00333 * 3 2 1 30 30 H 0.96993 * 119.99450 * 184.96291 * 8 7 5 31 31 H 1.08001 * 120.04782 * 0.02562 * 16 15 13 32 32 H 1.08003 * 119.95582 * 179.97438 * 17 16 15 33 33 H 0.96700 * 113.99873 * 90.00594 * 19 18 17 34 34 H 1.07998 * 119.95355 * 179.72552 * 20 18 17 35 35 H 1.09004 * 109.47035 * 264.32940 * 22 21 20 36 36 H 1.08999 * 109.47706 * 24.32908 * 22 21 20 37 37 H 1.09001 * 109.47194 * 144.33367 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1900 1.4424 1.1847 6 1 3.6858 1.1688 2.0997 7 6 5.5347 1.7944 1.2104 8 7 6.0606 2.4536 0.2029 9 14 6.5937 1.3301 2.6775 10 1 7.2033 -0.0041 2.4455 11 1 7.6672 2.3411 2.8528 12 1 5.7525 1.2840 3.9004 13 6 4.1783 1.4428 -1.1681 14 8 4.9149 0.5156 -1.4454 15 6 4.0218 2.5674 -2.1096 16 6 3.7468 3.8511 -1.6286 17 6 3.6021 4.8981 -2.5107 18 6 3.7285 4.6802 -3.8780 19 8 3.5845 5.7150 -4.7442 20 6 3.9957 3.4046 -4.3607 21 6 4.1476 2.3527 -3.4850 22 6 4.4430 0.9711 -4.0092 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 7.0130 2.6363 0.1873 31 1 3.6489 4.0213 -0.5666 32 1 3.3893 5.8900 -2.1401 33 1 4.4089 6.1803 -4.9416 34 1 4.0887 3.2388 -5.4238 35 1 3.5129 0.4096 -4.0979 36 1 4.9162 1.0473 -4.9881 37 1 5.1135 0.4568 -3.3205 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230322031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:11 Heat of formation + Delta-G solvation = -42.699919 kcal Electronic energy + Delta-G solvation = -20443.765647 eV Core-core repulsion = 17379.833317 eV Total energy + Delta-G solvation = -3063.932330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.59246 -38.20301 -36.13893 -35.02553 -32.99407 -31.86210 -30.96678 -29.38848 -26.62193 -25.83845 -24.36578 -22.49317 -21.12825 -20.90638 -19.49070 -17.64227 -17.21754 -15.87322 -15.44122 -14.97131 -14.76248 -14.51841 -13.92263 -13.71177 -13.56936 -13.06839 -12.94114 -12.59541 -12.15579 -11.94574 -11.74234 -11.63539 -11.41870 -11.23017 -11.14982 -10.91447 -10.84766 -10.73951 -10.46063 -10.21096 -10.03793 -9.97008 -8.99198 -8.38990 -8.19715 -7.86088 -7.38492 -6.18466 -3.58197 1.54828 1.95574 3.27923 3.36712 3.38199 3.68754 4.28038 4.41408 4.65366 4.92310 5.24945 5.40638 5.41644 5.52893 5.62408 5.76187 5.79778 5.95737 6.01304 6.08057 6.21156 6.23501 6.30323 6.35979 6.39810 6.45976 6.55569 6.73153 6.79334 6.89771 6.94228 7.06256 7.27513 7.37066 7.56031 7.96533 8.10776 9.00312 9.29162 9.55555 10.01199 10.94573 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.008188 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.785484 B = 3418.687380 C = 4252.255832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.134 3.866 4 N -0.547 5.547 5 C -0.291 4.291 6 H 0.084 0.916 7 C 0.026 3.974 8 N -0.879 5.879 9 Si 0.914 3.086 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.622 3.378 14 O -0.519 6.519 15 C -0.102 4.102 16 C -0.032 4.032 17 C -0.169 4.169 18 C 0.102 3.898 19 O -0.504 6.504 20 C -0.165 4.165 21 C -0.038 4.038 22 C -0.135 4.135 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.268 0.732 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.384 0.616 34 H 0.121 0.879 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 2.762 -5.402 8.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.009 3.991 4 N -0.275 5.275 5 C -0.417 4.417 6 H 0.102 0.898 7 C -0.176 4.176 8 N -0.520 5.520 9 Si 0.742 3.258 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.414 3.586 14 O -0.395 6.395 15 C -0.106 4.106 16 C -0.051 4.051 17 C -0.188 4.188 18 C 0.058 3.942 19 O -0.314 6.314 20 C -0.183 4.183 21 C -0.039 4.039 22 C -0.191 4.191 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.139 0.861 33 H 0.239 0.761 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.109 2.225 -5.549 8.548 hybrid contribution 1.233 0.221 0.675 1.423 sum -4.876 2.447 -4.874 7.316 Atomic orbital electron populations 1.21709 0.96528 1.00886 1.01296 1.22017 0.94358 0.99360 1.02345 1.21098 0.82716 0.94739 1.00561 1.42556 1.02410 1.78268 1.04227 1.19212 0.93932 1.43109 0.85482 0.89790 1.24999 0.98210 0.95924 0.98466 1.69431 1.12731 1.36747 1.33061 0.86130 0.79988 0.78326 0.81372 1.20825 1.21435 1.20028 1.17208 0.78215 0.83446 0.79715 1.90382 1.39052 1.35925 1.74171 1.20531 1.00888 0.96146 0.93041 1.21208 0.92810 0.90960 1.00107 1.21271 1.05408 0.99834 0.92260 1.18539 1.00427 0.86993 0.88268 1.84732 1.36320 1.45824 1.64524 1.21053 1.05416 0.92382 0.99469 1.19917 0.95922 0.95762 0.92286 1.21194 1.02874 0.93542 1.01500 0.92951 0.93173 0.93336 0.92632 0.91696 0.92043 0.93367 0.92071 0.84606 0.86089 0.76115 0.86150 0.92048 0.92790 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.63 16 2 C -0.14 -2.49 6.26 -26.73 -0.17 -2.66 16 3 C 0.13 2.62 5.49 -4.04 -0.02 2.60 16 4 N -0.55 -13.31 2.12 -116.01 -0.25 -13.56 16 5 C -0.29 -7.64 9.62 -15.00 -0.14 -7.78 16 6 H 0.08 2.11 7.89 -52.49 -0.41 1.70 16 7 C 0.03 0.71 5.05 -17.45 -0.09 0.63 16 8 N -0.88 -24.61 11.13 55.50 0.62 -23.99 16 9 Si 0.91 21.40 29.59 -169.99 -5.03 16.37 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.62 15.72 3.60 -12.49 -0.04 15.68 16 14 O -0.52 -14.52 14.10 5.26 0.07 -14.45 16 15 C -0.10 -2.28 5.11 -104.96 -0.54 -2.82 16 16 C -0.03 -0.67 9.51 -39.20 -0.37 -1.04 16 17 C -0.17 -3.03 9.97 -39.50 -0.39 -3.42 16 18 C 0.10 1.73 6.71 -39.01 -0.26 1.47 16 19 O -0.50 -7.21 13.49 -18.86 -0.25 -7.46 16 20 C -0.16 -2.88 9.60 -39.50 -0.38 -3.26 16 21 C -0.04 -0.75 5.91 -104.24 -0.62 -1.37 16 22 C -0.14 -2.50 9.38 36.00 0.34 -2.16 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 29 H 0.05 0.90 7.61 -51.93 -0.40 0.50 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.14 3.01 7.88 -52.49 -0.41 2.59 16 32 H 0.12 1.89 8.06 -52.48 -0.42 1.46 16 33 H 0.38 3.62 9.06 45.56 0.41 4.03 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.84 8.05 -51.93 -0.42 0.42 16 37 H 0.11 2.41 5.25 -51.93 -0.27 2.13 16 LS Contribution 314.90 15.07 4.75 4.75 Total: -1.00 -31.10 314.90 -6.85 -37.94 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.44 Total: 6.15 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.32 Total: -5.75 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.37 Total: -37.55 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.18 Total: -21.91 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.10 -6.85 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230322031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.756 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds