Wall clock time and date at job start Mon Mar 30 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47106 * 2 1 4 4 N 1.46497 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.36901 * 120.00089 * 269.99798 * 4 3 2 6 6 H 1.07994 * 119.99657 * 17.00222 * 5 4 3 7 7 C 1.39024 * 120.00020 * 196.99725 * 5 4 3 8 8 N 1.31386 * 119.99950 * 17.90494 * 7 5 4 9 9 Si 1.86798 * 119.99847 * 197.90463 * 7 5 4 10 10 H 1.48504 * 109.47177 * 90.00218 * 9 7 5 11 11 H 1.48500 * 109.46936 * 210.00017 * 9 7 5 12 12 H 1.48498 * 109.47170 * 330.00211 * 9 7 5 13 13 C 1.34777 * 119.99642 * 90.00143 * 4 3 2 14 14 O 1.21623 * 119.99869 * 241.67995 * 13 4 3 15 15 C 1.47496 * 120.00298 * 61.68264 * 13 4 3 16 16 C 1.39819 * 120.09238 * 30.32049 * 15 13 4 17 17 C 1.37662 * 119.90457 * 179.97438 * 16 15 13 18 18 C 1.39032 * 120.09337 * 0.02562 * 17 16 15 19 19 O 1.35719 * 119.90337 * 179.97438 * 18 17 16 20 20 C 1.38983 * 120.19002 * 0.27087 * 18 17 16 21 21 C 1.37711 * 120.09264 * 359.45303 * 20 18 17 22 22 C 1.50697 * 120.04618 * 180.25590 * 21 20 18 23 23 H 1.08999 * 109.47043 * 299.99905 * 1 2 3 24 24 H 1.09002 * 109.47539 * 60.00089 * 1 2 3 25 25 H 1.09005 * 109.46816 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47043 * 240.00095 * 2 1 3 27 27 H 1.09002 * 109.47539 * 119.99911 * 2 1 3 28 28 H 1.08999 * 109.47092 * 60.00125 * 3 2 1 29 29 H 1.09002 * 109.46849 * 300.00333 * 3 2 1 30 30 H 0.96993 * 119.99450 * 184.96291 * 8 7 5 31 31 H 1.08001 * 120.04782 * 0.02562 * 16 15 13 32 32 H 1.08003 * 119.95582 * 179.97438 * 17 16 15 33 33 H 0.96700 * 113.99873 * 90.00594 * 19 18 17 34 34 H 1.07998 * 119.95355 * 179.72552 * 20 18 17 35 35 H 1.09004 * 109.47035 * 264.32940 * 22 21 20 36 36 H 1.08999 * 109.47706 * 24.32908 * 22 21 20 37 37 H 1.09001 * 109.47194 * 144.33367 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1900 1.4424 1.1847 6 1 3.6858 1.1688 2.0997 7 6 5.5347 1.7944 1.2104 8 7 6.0606 2.4536 0.2029 9 14 6.5937 1.3301 2.6775 10 1 7.2033 -0.0041 2.4455 11 1 7.6672 2.3411 2.8528 12 1 5.7525 1.2840 3.9004 13 6 4.1783 1.4428 -1.1681 14 8 4.9149 0.5156 -1.4454 15 6 4.0218 2.5674 -2.1096 16 6 3.7468 3.8511 -1.6286 17 6 3.6021 4.8981 -2.5107 18 6 3.7285 4.6802 -3.8780 19 8 3.5845 5.7150 -4.7442 20 6 3.9957 3.4046 -4.3607 21 6 4.1476 2.3527 -3.4850 22 6 4.4430 0.9711 -4.0092 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 7.0130 2.6363 0.1873 31 1 3.6489 4.0213 -0.5666 32 1 3.3893 5.8900 -2.1401 33 1 4.4089 6.1803 -4.9416 34 1 4.0887 3.2388 -5.4238 35 1 3.5129 0.4096 -4.0979 36 1 4.9162 1.0473 -4.9881 37 1 5.1135 0.4568 -3.3205 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230322031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:10 Heat of formation + Delta-G solvation = -62.279752 kcal Electronic energy + Delta-G solvation = -20444.614692 eV Core-core repulsion = 17379.833317 eV Total energy + Delta-G solvation = -3064.781375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18321 -39.78470 -37.53991 -36.77945 -34.70893 -33.39779 -32.69809 -30.88888 -28.12613 -27.50582 -26.08036 -24.03979 -22.62883 -22.36969 -21.22718 -19.06186 -18.86856 -17.60529 -17.07477 -16.72684 -16.16033 -16.12786 -15.64207 -15.35291 -15.08659 -14.58372 -14.33076 -14.00751 -13.74347 -13.48550 -13.41497 -13.26642 -12.94523 -12.81679 -12.62664 -12.55595 -12.47641 -12.31924 -12.20405 -11.98617 -11.54066 -11.32943 -10.93092 -10.23641 -9.70152 -9.37357 -9.29997 -8.20523 -5.62273 0.04581 0.48664 1.38987 1.45804 1.51915 1.98780 2.39756 2.85739 3.16987 3.24288 3.34622 3.98869 4.02677 4.12144 4.28785 4.31556 4.36875 4.55654 4.60406 4.71358 4.75801 4.80013 4.82271 4.96783 5.08266 5.10751 5.20950 5.30022 5.32400 5.44484 5.47539 5.49612 5.56109 5.76694 5.93558 6.11684 6.88918 7.00054 7.38382 7.67664 8.06915 8.90423 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.008188 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.785484 B = 3418.687380 C = 4252.255832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.131 3.869 4 N -0.563 5.563 5 C -0.299 4.299 6 H 0.089 0.911 7 C -0.025 4.025 8 N -0.904 5.904 9 Si 0.972 3.028 10 H -0.295 1.295 11 H -0.287 1.287 12 H -0.257 1.257 13 C 0.621 3.379 14 O -0.564 6.564 15 C -0.136 4.136 16 C -0.040 4.040 17 C -0.169 4.169 18 C 0.124 3.876 19 O -0.501 6.501 20 C -0.159 4.159 21 C -0.048 4.048 22 C -0.129 4.129 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.035 0.965 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.260 0.740 31 H 0.113 0.887 32 H 0.145 0.855 33 H 0.411 0.589 34 H 0.152 0.848 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 4.041 -6.559 10.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C 0.008 3.992 4 N -0.291 5.291 5 C -0.427 4.427 6 H 0.107 0.893 7 C -0.224 4.224 8 N -0.546 5.546 9 Si 0.799 3.201 10 H -0.222 1.222 11 H -0.213 1.213 12 H -0.181 1.181 13 C 0.415 3.585 14 O -0.443 6.443 15 C -0.140 4.140 16 C -0.058 4.058 17 C -0.187 4.187 18 C 0.080 3.920 19 O -0.314 6.314 20 C -0.178 4.178 21 C -0.049 4.049 22 C -0.186 4.186 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.163 0.837 33 H 0.271 0.729 34 H 0.170 0.830 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.377 3.532 -6.699 10.572 hybrid contribution 1.557 -0.100 0.923 1.813 sum -5.820 3.432 -5.776 8.889 Atomic orbital electron populations 1.21638 0.92933 1.02360 1.02482 1.21923 0.97393 0.97432 1.00633 1.21303 0.80334 0.96226 1.01365 1.42785 1.04196 1.78478 1.03665 1.19520 0.94429 1.42266 0.86451 0.89294 1.25786 0.99403 0.96315 1.00929 1.69577 1.12128 1.38139 1.34790 0.85211 0.78514 0.76982 0.79409 1.22213 1.21345 1.18062 1.17767 0.77014 0.83477 0.80206 1.90358 1.40709 1.37767 1.75441 1.20385 1.04249 0.95608 0.93772 1.21021 0.93917 0.91398 0.99503 1.21456 1.04741 0.99953 0.92557 1.18513 0.97776 0.87632 0.88124 1.84671 1.38259 1.45028 1.63452 1.21314 1.04172 0.91691 1.00599 1.20126 0.95974 0.97116 0.91708 1.21096 1.02693 0.92774 1.02002 0.91609 0.92118 0.91749 0.94578 0.93184 0.91071 0.92526 0.92997 0.86930 0.83702 0.72950 0.83007 0.91214 0.89609 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.91 71.98 0.71 -2.76 16 2 C -0.13 -4.76 6.26 30.59 0.19 -4.57 16 3 C 0.13 5.22 5.49 86.38 0.47 5.69 16 4 N -0.56 -28.32 2.12 -639.19 -1.35 -29.67 16 5 C -0.30 -16.16 9.62 84.09 0.81 -15.35 16 6 H 0.09 4.56 7.89 -2.91 -0.02 4.53 16 7 C -0.03 -1.40 5.05 84.95 0.43 -0.97 16 8 N -0.90 -52.47 11.13 21.68 0.24 -52.23 16 9 Si 0.97 45.01 29.59 68.60 2.03 47.04 16 10 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.62 32.60 3.60 86.68 0.31 32.91 16 14 O -0.56 -33.17 14.10 -4.10 -0.06 -33.23 16 15 C -0.14 -6.20 5.11 -20.08 -0.10 -6.30 16 16 C -0.04 -1.65 9.51 22.52 0.21 -1.44 16 17 C -0.17 -5.70 9.97 22.32 0.22 -5.48 16 18 C 0.12 3.80 6.71 22.64 0.15 3.96 16 19 O -0.50 -11.96 13.49 -90.40 -1.22 -13.17 16 20 C -0.16 -5.09 9.60 22.32 0.21 -4.88 16 21 C -0.05 -1.89 5.91 -19.62 -0.12 -2.00 16 22 C -0.13 -4.76 9.38 71.24 0.67 -4.09 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 2.64 8.04 -2.39 -0.02 2.62 16 29 H 0.06 2.13 7.61 -2.39 -0.02 2.11 16 30 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.11 5.16 7.88 -2.91 -0.02 5.14 16 32 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.41 5.66 9.06 -74.06 -0.67 4.99 16 34 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 35 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.09 2.51 8.05 -2.39 -0.02 2.49 16 37 H 0.07 3.33 5.25 -2.39 -0.01 3.31 16 Total: -1.00 -69.72 314.90 4.22 -65.50 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.40 Total: 21.04 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 4.18 Total: -5.27 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -1.11 Total: -81.90 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.28 Total: -46.41 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.72 4.22 -65.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230322031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.218 kcal (2) G-P(sol) polarization free energy of solvation -69.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds