Wall clock time and date at job start Mon Mar 30 2020 07:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36094 * 117.00101 * 2 1 4 4 C 1.38469 * 120.02511 * 359.72181 * 3 2 1 5 5 C 1.38270 * 120.07293 * 179.76956 * 4 3 2 6 6 C 1.38703 * 120.12084 * 0.50602 * 5 4 3 7 7 O 1.35981 * 119.97826 * 179.76657 * 6 5 4 8 8 C 1.42897 * 116.99768 * 359.97438 * 7 6 5 9 9 C 1.52995 * 109.47154 * 179.97438 * 8 7 6 10 10 C 1.50702 * 115.54550 * 65.11299 * 9 8 7 11 11 H 1.07994 * 120.00081 * 266.10450 * 10 9 8 12 12 C 1.37875 * 120.00331 * 86.11128 * 10 9 8 13 13 N 1.31522 * 120.00040 * 353.69697 * 12 10 9 14 14 Si 1.86801 * 120.00243 * 173.69957 * 12 10 9 15 15 H 1.48502 * 109.47006 * 89.99848 * 14 12 10 16 16 H 1.48504 * 109.47071 * 209.99614 * 14 12 10 17 17 H 1.48495 * 109.47072 * 329.99707 * 14 12 10 18 18 C 1.52991 * 117.50423 * 279.44089 * 9 8 7 19 19 C 1.52998 * 117.49983 * 210.77992 * 9 8 7 20 20 C 1.38649 * 120.04828 * 359.74545 * 6 5 4 21 21 C 1.38698 * 119.93174 * 0.02562 * 20 6 5 22 22 N 1.39944 * 120.06462 * 180.02562 * 21 20 6 23 23 H 1.08995 * 109.47167 * 300.00347 * 1 2 3 24 24 H 1.09002 * 109.46323 * 60.00506 * 1 2 3 25 25 H 1.08994 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.96248 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.94300 * 180.24616 * 5 4 3 28 28 H 1.09000 * 109.47039 * 300.00249 * 8 7 6 29 29 H 1.09006 * 109.47126 * 59.99694 * 8 7 6 30 30 H 0.96990 * 120.00493 * 180.02562 * 13 12 10 31 31 H 1.09002 * 117.49561 * 359.97438 * 18 9 8 32 32 H 1.09000 * 117.50408 * 145.01429 * 18 9 8 33 33 H 1.09005 * 117.49976 * 214.98502 * 19 9 8 34 34 H 1.09001 * 117.49637 * 359.97438 * 19 9 8 35 35 H 1.08004 * 120.03076 * 180.02562 * 20 6 5 36 36 H 0.97002 * 119.99905 * 179.97438 * 22 21 20 37 37 H 0.97002 * 120.00035 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2933 2.3742 -0.0058 5 6 1.9200 3.6067 -0.0010 6 6 3.3049 3.6834 -0.0009 7 8 3.9182 4.8971 -0.0010 8 6 3.0743 6.0503 -0.0017 9 6 3.9373 7.3136 -0.0010 10 6 4.7773 7.5275 -1.2338 11 1 5.7998 7.1806 -1.2574 12 6 4.2407 8.1662 -2.3315 13 7 2.9631 8.4782 -2.3514 14 14 5.3280 8.5886 -3.7906 15 1 5.3222 7.4597 -4.7554 16 1 4.8106 9.8112 -4.4560 17 1 6.7156 8.8306 -3.3202 18 6 4.5185 7.7715 1.3380 19 6 3.3724 8.5547 0.6930 20 6 4.0644 2.5235 -0.0004 21 6 3.4379 1.2860 -0.0004 22 7 4.2019 0.1135 0.0007 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2147 2.3175 -0.0108 27 1 1.3301 4.5114 -0.0015 28 1 2.4455 6.0398 -0.8920 29 1 2.4446 6.0403 0.8880 30 1 2.5855 8.9271 -3.1238 31 1 4.2858 7.1729 2.2187 32 1 5.5084 8.2278 1.3275 33 1 3.6087 9.5259 0.2581 34 1 2.3858 8.4711 1.1487 35 1 5.1428 2.5835 0.0001 36 1 3.7627 -0.7514 0.0011 37 1 5.1705 0.1657 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232310401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:49 Heat of formation + Delta-G solvation = -24.248233 kcal Electronic energy + Delta-G solvation = -19467.820888 eV Core-core repulsion = 16404.688683 eV Total energy + Delta-G solvation = -3063.132205 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05496 -38.49973 -36.74605 -35.71386 -33.70961 -31.92463 -29.62062 -28.45297 -26.81185 -26.35985 -25.19077 -22.14172 -21.41516 -21.03776 -19.18078 -18.01100 -17.17994 -17.03201 -16.03474 -15.59447 -15.42218 -14.87430 -14.77816 -14.42124 -14.20089 -13.76130 -13.44457 -12.86584 -12.53670 -12.50338 -12.19621 -11.65912 -11.38667 -11.11513 -10.97023 -10.92496 -10.69181 -10.49225 -10.41620 -10.20536 -9.65750 -9.54790 -8.81288 -8.43095 -8.18515 -7.78949 -6.90811 -6.04669 -4.08519 1.72398 1.99171 3.31331 3.37869 3.42037 3.44398 3.80914 4.18292 4.30827 4.42859 5.01134 5.16246 5.17986 5.25713 5.35623 5.42834 5.52479 5.65127 5.83504 5.99013 6.04130 6.14279 6.25313 6.33933 6.55013 6.59169 6.65956 6.75134 6.84635 6.99443 7.04763 7.31845 7.39415 7.46601 7.80058 7.89620 7.94590 8.28565 8.44864 8.92939 9.56988 11.04963 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.004700 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.433551 B = 5956.228479 C = 6156.032933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.328 6.328 3 C -0.005 4.005 4 C -0.119 4.119 5 C -0.233 4.233 6 C 0.166 3.834 7 O -0.295 6.295 8 C 0.106 3.894 9 C 0.040 3.960 10 C -0.486 4.486 11 H 0.062 0.938 12 C 0.069 3.931 13 N -0.884 5.884 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.205 4.205 19 C -0.146 4.146 20 C -0.211 4.211 21 C 0.231 3.769 22 N -0.874 5.874 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.133 0.867 36 H 0.401 0.599 37 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 -13.874 5.057 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.243 6.243 3 C -0.053 4.053 4 C -0.138 4.138 5 C -0.254 4.254 6 C 0.118 3.882 7 O -0.207 6.207 8 C 0.032 3.968 9 C 0.039 3.961 10 C -0.524 4.524 11 H 0.080 0.920 12 C -0.134 4.134 13 N -0.521 5.521 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.243 4.243 19 C -0.183 4.183 20 C -0.235 4.235 21 C 0.126 3.874 22 N -0.415 5.415 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.151 0.849 36 H 0.229 0.771 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.761 -13.846 4.936 15.173 hybrid contribution 0.051 0.229 -0.894 0.925 sum -3.710 -13.617 4.041 14.681 Atomic orbital electron populations 1.22876 0.79299 1.02947 1.01001 1.85893 1.20490 1.26850 1.91054 1.18150 0.90198 0.84555 1.12354 1.20719 0.99114 0.91367 1.02611 1.20930 0.93768 0.98086 1.12640 1.18778 0.90576 0.86368 0.92494 1.86183 1.36513 1.11481 1.86550 1.22594 0.92364 0.82939 0.98934 1.18731 0.97155 0.88957 0.91251 1.20390 0.97786 1.37388 0.96790 0.91960 1.24985 0.94912 0.95308 0.98151 1.69992 1.11222 1.40794 1.30091 0.86604 0.80974 0.77907 0.82633 1.20607 1.21206 1.19752 1.23000 0.97946 1.05849 0.97472 1.22524 0.94910 0.97596 1.03315 1.19541 0.99825 0.88112 1.16032 1.16667 0.87103 0.87076 0.96515 1.42229 1.08066 1.05299 1.85912 0.93209 0.93150 0.89026 0.85834 0.85386 0.91394 0.95223 0.93014 0.91525 0.90168 0.89525 0.91756 0.84925 0.77119 0.77539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.33 -4.34 9.74 -20.04 -0.20 -4.54 16 3 C -0.01 -0.08 6.70 -39.10 -0.26 -0.35 16 4 C -0.12 -1.84 9.03 -39.48 -0.36 -2.19 16 5 C -0.23 -4.18 9.03 -39.40 -0.36 -4.54 16 6 C 0.17 3.26 6.68 -39.26 -0.26 3.00 16 7 O -0.30 -6.69 10.07 -19.68 -0.20 -6.89 16 8 C 0.11 2.46 4.56 37.16 0.17 2.63 16 9 C 0.04 0.99 1.62 -155.67 -0.25 0.74 16 10 C -0.49 -13.42 8.77 -34.44 -0.30 -13.73 16 11 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 12 C 0.07 1.90 5.38 -17.82 -0.10 1.80 16 13 N -0.88 -24.82 12.88 55.43 0.71 -24.11 16 14 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.21 -4.54 9.96 -26.70 -0.27 -4.81 16 19 C -0.15 -3.38 9.37 -26.70 -0.25 -3.63 16 20 C -0.21 -3.65 9.83 -39.26 -0.39 -4.04 16 21 C 0.23 3.55 6.77 -83.59 -0.57 2.98 16 22 N -0.87 -10.23 9.09 32.50 0.30 -9.94 16 23 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 24 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.12 1.58 6.29 -52.48 -0.33 1.25 16 27 H 0.13 2.27 6.28 -52.49 -0.33 1.94 16 28 H 0.07 1.68 7.66 -51.93 -0.40 1.29 16 29 H 0.03 0.62 7.61 -51.93 -0.40 0.23 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 33 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.13 2.14 8.06 -52.48 -0.42 1.71 16 36 H 0.40 4.17 8.19 -40.82 -0.33 3.83 16 37 H 0.40 3.82 8.84 -40.82 -0.36 3.46 16 LS Contribution 315.25 15.07 4.75 4.75 Total: -1.00 -30.18 315.25 -6.87 -37.05 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.03 Total: 8.22 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -2.19 Total: -20.82 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 1.01 Total: -34.05 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.39 Total: -11.43 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.18 -6.87 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232310401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.805 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds