Wall clock time and date at job start Mon Mar 30 2020 07:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36094 * 117.00101 * 2 1 4 4 C 1.38469 * 120.02511 * 359.72181 * 3 2 1 5 5 C 1.38270 * 120.07293 * 179.76956 * 4 3 2 6 6 C 1.38703 * 120.12084 * 0.50602 * 5 4 3 7 7 O 1.35981 * 119.97826 * 179.76657 * 6 5 4 8 8 C 1.42897 * 116.99768 * 359.97438 * 7 6 5 9 9 C 1.52995 * 109.47154 * 179.97438 * 8 7 6 10 10 C 1.50702 * 115.54550 * 65.11299 * 9 8 7 11 11 H 1.07994 * 120.00081 * 266.10450 * 10 9 8 12 12 C 1.37875 * 120.00331 * 86.11128 * 10 9 8 13 13 N 1.31522 * 120.00040 * 353.69697 * 12 10 9 14 14 Si 1.86801 * 120.00243 * 173.69957 * 12 10 9 15 15 H 1.48502 * 109.47006 * 89.99848 * 14 12 10 16 16 H 1.48504 * 109.47071 * 209.99614 * 14 12 10 17 17 H 1.48495 * 109.47072 * 329.99707 * 14 12 10 18 18 C 1.52991 * 117.50423 * 279.44089 * 9 8 7 19 19 C 1.52998 * 117.49983 * 210.77992 * 9 8 7 20 20 C 1.38649 * 120.04828 * 359.74545 * 6 5 4 21 21 C 1.38698 * 119.93174 * 0.02562 * 20 6 5 22 22 N 1.39944 * 120.06462 * 180.02562 * 21 20 6 23 23 H 1.08995 * 109.47167 * 300.00347 * 1 2 3 24 24 H 1.09002 * 109.46323 * 60.00506 * 1 2 3 25 25 H 1.08994 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.96248 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.94300 * 180.24616 * 5 4 3 28 28 H 1.09000 * 109.47039 * 300.00249 * 8 7 6 29 29 H 1.09006 * 109.47126 * 59.99694 * 8 7 6 30 30 H 0.96990 * 120.00493 * 180.02562 * 13 12 10 31 31 H 1.09002 * 117.49561 * 359.97438 * 18 9 8 32 32 H 1.09000 * 117.50408 * 145.01429 * 18 9 8 33 33 H 1.09005 * 117.49976 * 214.98502 * 19 9 8 34 34 H 1.09001 * 117.49637 * 359.97438 * 19 9 8 35 35 H 1.08004 * 120.03076 * 180.02562 * 20 6 5 36 36 H 0.97002 * 119.99905 * 179.97438 * 22 21 20 37 37 H 0.97002 * 120.00035 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2933 2.3742 -0.0058 5 6 1.9200 3.6067 -0.0010 6 6 3.3049 3.6834 -0.0009 7 8 3.9182 4.8971 -0.0010 8 6 3.0743 6.0503 -0.0017 9 6 3.9373 7.3136 -0.0010 10 6 4.7773 7.5275 -1.2338 11 1 5.7998 7.1806 -1.2574 12 6 4.2407 8.1662 -2.3315 13 7 2.9631 8.4782 -2.3514 14 14 5.3280 8.5886 -3.7906 15 1 5.3222 7.4597 -4.7554 16 1 4.8106 9.8112 -4.4560 17 1 6.7156 8.8306 -3.3202 18 6 4.5185 7.7715 1.3380 19 6 3.3724 8.5547 0.6930 20 6 4.0644 2.5235 -0.0004 21 6 3.4379 1.2860 -0.0004 22 7 4.2019 0.1135 0.0007 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2147 2.3175 -0.0108 27 1 1.3301 4.5114 -0.0015 28 1 2.4455 6.0398 -0.8920 29 1 2.4446 6.0403 0.8880 30 1 2.5855 8.9271 -3.1238 31 1 4.2858 7.1729 2.2187 32 1 5.5084 8.2278 1.3275 33 1 3.6087 9.5259 0.2581 34 1 2.3858 8.4711 1.1487 35 1 5.1428 2.5835 0.0001 36 1 3.7627 -0.7514 0.0011 37 1 5.1705 0.1657 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232310401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:49 Heat of formation + Delta-G solvation = -43.348735 kcal Electronic energy + Delta-G solvation = -19468.649148 eV Core-core repulsion = 16404.688683 eV Total energy + Delta-G solvation = -3063.960465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.31072 -39.91925 -38.24719 -37.20331 -34.92272 -33.99834 -30.94082 -29.50345 -28.30542 -27.65967 -27.17468 -23.37179 -22.99742 -22.60072 -21.04748 -19.23397 -18.61224 -18.28135 -17.76534 -16.82661 -16.59383 -16.55550 -16.20199 -16.09030 -15.64761 -15.07325 -14.84765 -14.51222 -13.86082 -13.79669 -13.56824 -13.34038 -12.98127 -12.87496 -12.54171 -12.42243 -12.27426 -12.06027 -11.83190 -11.80853 -11.40444 -11.04800 -10.72328 -10.46392 -10.05491 -9.09736 -8.12835 -8.11160 -6.22282 0.45283 0.67264 1.40785 1.42117 1.52173 2.36968 2.44197 2.46587 2.87822 3.10056 3.17079 3.55042 3.88834 4.19096 4.21691 4.30607 4.44534 4.45503 4.47679 4.51204 4.61948 4.68686 4.75521 4.81972 4.88821 4.96176 4.98991 5.20941 5.36565 5.45724 5.56775 5.61870 5.65831 5.76969 6.27841 6.38506 6.65951 6.79523 6.81866 7.05584 7.45439 8.96177 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.004700 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.433551 B = 5956.228479 C = 6156.032933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.331 6.331 3 C 0.000 4.000 4 C -0.118 4.118 5 C -0.247 4.247 6 C 0.130 3.870 7 O -0.320 6.320 8 C 0.124 3.876 9 C 0.004 3.996 10 C -0.505 4.505 11 H 0.047 0.953 12 C 0.027 3.973 13 N -0.907 5.907 14 Si 0.948 3.052 15 H -0.280 1.280 16 H -0.279 1.279 17 H -0.269 1.269 18 C -0.184 4.184 19 C -0.142 4.142 20 C -0.221 4.221 21 C 0.232 3.768 22 N -0.858 5.858 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.121 0.879 26 H 0.151 0.849 27 H 0.122 0.878 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.261 0.739 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.137 0.863 36 H 0.410 0.590 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 -15.688 5.406 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.247 6.247 3 C -0.048 4.048 4 C -0.137 4.137 5 C -0.268 4.268 6 C 0.084 3.916 7 O -0.233 6.233 8 C 0.049 3.951 9 C 0.003 3.997 10 C -0.542 4.542 11 H 0.065 0.935 12 C -0.174 4.174 13 N -0.545 5.545 14 Si 0.774 3.226 15 H -0.206 1.206 16 H -0.204 1.204 17 H -0.194 1.194 18 C -0.221 4.221 19 C -0.180 4.180 20 C -0.245 4.245 21 C 0.125 3.875 22 N -0.399 5.399 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.139 0.861 26 H 0.169 0.831 27 H 0.139 0.861 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.155 0.845 36 H 0.240 0.760 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -4.216 -15.705 5.293 17.101 hybrid contribution 0.148 0.586 -0.977 1.149 sum -4.068 -15.119 4.316 16.241 Atomic orbital electron populations 1.23222 0.77121 1.05196 1.01641 1.85903 1.22675 1.25461 1.90619 1.18287 0.90388 0.85346 1.10770 1.20962 1.00575 0.90461 1.01709 1.20957 0.93175 0.98990 1.13685 1.19096 0.91683 0.85753 0.95117 1.86106 1.37117 1.12362 1.87713 1.22204 0.91734 0.82883 0.98311 1.18890 0.98556 0.90457 0.91758 1.20601 0.97559 1.37629 0.98452 0.93492 1.25632 0.96056 0.95260 1.00402 1.70078 1.12306 1.41305 1.30764 0.85714 0.79543 0.77710 0.79654 1.20578 1.20433 1.19353 1.22996 0.97543 1.04754 0.96830 1.22450 0.96217 0.96122 1.03190 1.19638 1.00096 0.88249 1.16535 1.16733 0.87741 0.87425 0.95574 1.42198 1.08650 1.04599 1.84497 0.92332 0.92683 0.86123 0.83117 0.86054 0.94252 0.93482 0.92973 0.89202 0.90185 0.91400 0.90009 0.84524 0.75999 0.76228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.33 -7.78 9.74 -94.62 -0.92 -8.70 16 3 C 0.00 0.00 6.70 22.58 0.15 0.15 16 4 C -0.12 -3.48 9.03 22.33 0.20 -3.27 16 5 C -0.25 -8.90 9.03 22.39 0.20 -8.69 16 6 C 0.13 5.21 6.68 22.48 0.15 5.36 16 7 O -0.32 -14.91 10.07 -93.33 -0.94 -15.85 16 8 C 0.12 5.85 4.56 71.98 0.33 6.18 16 9 C 0.00 0.19 1.62 -52.93 -0.09 0.11 16 10 C -0.50 -28.54 8.77 25.60 0.22 -28.32 16 11 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 12 C 0.03 1.49 5.38 84.65 0.46 1.95 16 13 N -0.91 -51.80 12.88 21.45 0.28 -51.52 16 14 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 C -0.18 -8.05 9.96 30.61 0.30 -7.74 16 19 C -0.14 -6.61 9.37 30.62 0.29 -6.32 16 20 C -0.22 -7.60 9.83 22.48 0.22 -7.38 16 21 C 0.23 6.77 6.77 38.21 0.26 7.03 16 22 N -0.86 -18.12 9.09 -51.09 -0.46 -18.59 16 23 H 0.06 0.84 7.67 -2.39 -0.02 0.82 16 24 H 0.05 0.83 7.65 -2.39 -0.02 0.82 16 25 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.15 3.49 6.29 -2.91 -0.02 3.47 16 27 H 0.12 4.41 6.28 -2.91 -0.02 4.40 16 28 H 0.04 2.04 7.66 -2.39 -0.02 2.02 16 29 H 0.05 2.00 7.61 -2.38 -0.02 1.98 16 30 H 0.26 14.22 8.31 -92.72 -0.77 13.45 16 31 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 32 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.07 3.37 8.14 -2.38 -0.02 3.35 16 34 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 36 H 0.41 7.38 8.19 -92.71 -0.76 6.62 16 37 H 0.41 6.97 8.84 -92.71 -0.82 6.15 16 Total: -1.00 -65.23 315.25 3.31 -61.92 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.48 Total: 25.98 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 3.81 Total: -39.49 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -0.19 Total: -70.11 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.86 Total: -24.56 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -65.23 3.31 -61.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232310401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.570 kcal (2) G-P(sol) polarization free energy of solvation -65.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds